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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of RNA splicing
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Accession:GO:0043484 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.


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regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07051190.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:260,653...262,124 JBrowse link
G AC141959.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:137,336,107...137,353,249 JBrowse link
G Aff2 AF4/FMR2 family, member 2 ISO
IBA
(PMID:19136466)
PMID:21873635
(MGI:4430801|PMID:19136466)
RGD PMID:19136466, PMID:21873635 MGI:4430801, RGD:13792537 NCBI chr  X:153,539,951...154,051,022
Ensembl chr  X:153,539,668...154,051,181
JBrowse link
G Ahnak AHNAK nucleoprotein ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5545966|PMID:21940993)
UniProt
RGD
PMID:21940993, PMID:21873635 GO_REF:0000024 MGI:5545966, RGD:13792537 NCBI chr 1:225,184,883...225,429,638
Ensembl chr 1:225,184,939...225,215,015
JBrowse link
G Akap17a A-kinase anchoring protein 17A ISO
IBA
(PMID:19840947)
PMID:21873635
RGD PMID:19840947, PMID:21873635 RGD:13792537 NCBI chr12:18,527,116...18,531,780
Ensembl chr12:18,526,422...18,531,161
JBrowse link
G Brdt bromodomain testis associated ISS
ISO
IEA
GO_REF:0000024
(MGI:5448498|PMID:22570411)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22570411 GO_REF:0000024 GO_REF:0000107 MGI:5448498 NCBI chr14:3,437,876...3,462,613
Ensembl chr14:3,405,995...3,462,629
JBrowse link
G Cdk12 cyclin-dependent kinase 12 IDA RGD PMID:16537916 RGD:8553775 NCBI chr10:86,157,186...86,210,657
Ensembl chr10:86,157,608...86,222,707
JBrowse link
G Celf1 CUGBP, Elav-like family member 1 ISO
ISS
(PMID:16946708)
GO_REF:0000024
RGD
UniProt
PMID:16946708 GO_REF:0000024 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Clk1 CDC-like kinase 1 ISO (PMID:19168442) RGD PMID:19168442 NCBI chr 9:65,296,777...65,308,017
Ensembl chr 9:65,296,778...65,307,995
JBrowse link
G Clk2 CDC-like kinase 2 ISO (PMID:9637771) RGD PMID:9637771 NCBI chr 2:188,476,789...188,488,809
Ensembl chr 2:188,476,820...188,496,191
JBrowse link
G Clk3 CDC-like kinase 3 ISO
ISS
(PMID:9637771)
GO_REF:0000024
RGD
UniProt
PMID:9637771 GO_REF:0000024 NCBI chr 8:62,528,135...62,543,550
Ensembl chr 8:62,528,225...62,542,622
JBrowse link
G Clk4 CDC-like kinase 4 ISO (PMID:19168442) RGD PMID:19168442 NCBI chr10:36,715,565...36,733,473
Ensembl chr10:36,715,565...36,733,133
JBrowse link
G Cpne1 copine 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,617,733...151,625,448
NCBI chr 3:152,150,143...152,192,936
Ensembl chr 3:151,616,037...151,625,644
Ensembl chr 3:151,616,037...151,625,644
JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 ISO
IBA
IEA
ISS
(PMID:19285943)
PMID:21873635
(MGI:5915403|PMID:29107558)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19285943 PMID:29107558, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5915403, RGD:13792537 NCBI chr 5:24,576,988...24,631,758
Ensembl chr 5:24,576,991...24,631,698
JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 ISO
IEA
IBA
ISS
(PMID:19285943)
GO_REF:0000107
PMID:21873635
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19285943, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr19:38,113,412...38,120,578
Ensembl chr19:38,113,412...38,120,578
JBrowse link
G Fastk Fas-activated serine/threonine kinase ISO (PMID:17135269), (PMID:17592127) RGD PMID:17135269 PMID:17592127 NCBI chr 4:7,260,521...7,264,590
Ensembl chr 4:7,260,575...7,264,589
JBrowse link
G Fblim1 filamin binding LIM protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:160,122,466...160,158,921
Ensembl chr 5:160,122,425...160,158,386
JBrowse link
G Fus FUS RNA binding protein ISO (PMID:25453086), (PMID:27731383) RGD PMID:25453086 PMID:27731383 NCBI chr 1:199,412,805...199,426,705
Ensembl chr 1:199,412,834...199,426,702
JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:21,039,990...21,056,413
Ensembl chr14:21,039,990...21,056,452
JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20526337), (PMID:9111328)
UniProt
RGD
PMID:9111328 PMID:20526337, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:149,957,143...149,978,896
Ensembl chr 4:149,957,206...149,978,895
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO
IBA
ISS
(PMID:16946708)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16946708, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:35,872,619...35,879,911
Ensembl chr10:35,870,232...35,879,910
JBrowse link
G Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:105,417,603...105,423,531
Ensembl chr  X:105,419,285...105,422,861
JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:27,167,926...27,178,172
Ensembl chr20:27,169,267...27,216,941
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:86,994,090...87,006,776
Ensembl chr 1:86,996,093...87,006,776
JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:2,698,983...2,729,715
Ensembl chr 6:2,699,961...2,729,394
JBrowse link
G LOC103690302 AF4/FMR2 family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:153,539,668...154,051,181 JBrowse link
G LOC679087 similar to swan IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:25,722,247...25,730,014
Ensembl chr 5:25,725,683...25,728,311
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO (PMID:15257297), (PMID:16946708) RGD PMID:15257297 PMID:16946708 NCBI chr 2:150,698,248...150,867,791
Ensembl chr 2:150,756,185...150,869,690
JBrowse link
G Mbnl2 muscleblind-like splicing regulator 2 ISO (PMID:15257297), (PMID:16946708) RGD PMID:15257297 PMID:16946708 NCBI chr15:105,640,097...105,797,933
Ensembl chr15:105,640,097...105,797,932
JBrowse link
G Mbnl3 muscleblind-like splicing regulator 3 ISO (PMID:15257297) RGD PMID:15257297 NCBI chr  X:138,378,674...138,473,365
Ensembl chr  X:138,384,912...138,435,391
JBrowse link
G Mettl4 methyltransferase like 4 ISO (PMID:31913360) RGD PMID:31913360 NCBI chr 9:119,871,519...119,953,248
Ensembl chr 9:119,873,170...119,897,268
JBrowse link
G Myod1 myogenic differentiation 1 ISO (PMID:10672515) RGD PMID:10672515 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
G Pqbp1 polyglutamine binding protein 1 ISO
IBA
IEA
(PMID:23512658)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:23512658, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr  X:15,448,570...15,453,130
Ensembl chr  X:15,348,138...15,453,130
JBrowse link
G Prx periaxin ISO
IBA
(MGI:5545966|PMID:21940993)
PMID:21873635
RGD PMID:21940993, PMID:21873635 MGI:5545966, RGD:13792537 NCBI chr 1:84,302,074...84,324,560
Ensembl chr 1:84,304,228...84,324,560
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:223,261,444...223,323,075
Ensembl chr 2:223,262,852...223,322,585
JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:76,670,074...76,756,196
Ensembl chr 5:76,673,990...76,756,147
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:118,157,093...118,396,733
Ensembl chr 7:118,156,946...118,396,728
JBrowse link
G Rbm12 RNA binding motif protein 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,616,038...151,658,427
Ensembl chr 3:151,641,095...151,658,417
Ensembl chr 3:151,641,095...151,658,417
Ensembl chr 3:151,641,095...151,658,417
Ensembl chr 3:151,641,095...151,658,417
JBrowse link
G Rbm12b RNA binding motif protein 12B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:25,247,990...25,257,678
Ensembl chr 5:25,253,010...25,255,938
JBrowse link
G Rbm20 RNA binding motif protein 20 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:274,391,932...274,589,816
Ensembl chr 1:274,391,932...274,589,816
JBrowse link
G Rbm38 RNA binding motif protein 38 ISO (PMID:19285943) RGD PMID:19285943 NCBI chr 3:171,037,891...171,050,500
Ensembl chr 3:171,037,957...171,050,475
JBrowse link
G Rrp1b ribosomal RNA processing 1B ISO (MGI:5919306|PMID:23604122) RGD PMID:23604122 MGI:5919306 NCBI chr20:10,844,234...10,869,830
Ensembl chr20:10,844,266...10,869,821
JBrowse link
G Smptb polypyrimidine tract-binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,484,839...17,486,721
Ensembl chr  X:17,484,839...17,486,721
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 ISO
ISS
(PMID:2467746)
GO_REF:0000024
RGD
UniProt
PMID:2467746 GO_REF:0000024 NCBI chr 1:101,367,470...101,388,153
Ensembl chr 1:101,367,471...101,388,129
JBrowse link
G Son SON DNA and RNA binding protein ISO (PMID:27545680) RGD PMID:27545680 NCBI chr11:31,806,598...31,837,769
Ensembl chr11:31,806,618...31,837,763
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO
IBA
(MGI:4414616|PMID:19737518)
PMID:21873635
RGD PMID:19737518, PMID:21873635 MGI:4414616, RGD:13792537 NCBI chr12:45,726,192...45,884,644
Ensembl chr12:45,727,112...45,882,548
JBrowse link
G Tra2b transformer 2 beta homolog ISO (PMID:10749975) RGD PMID:10749975 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
G Zfp326 zinc finger protein 326 ISO (PMID:22446626) RGD PMID:22446626 NCBI chr14:4,998,530...5,006,759
NCBI chr14:5,016,764...5,036,663
Ensembl chr14:4,998,539...5,033,942
JBrowse link
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO (PMID:12665594) RGD PMID:12665594 NCBI chr15:33,288,369...33,333,256
Ensembl chr15:33,288,374...33,333,417
JBrowse link
G Akr1c1 aldo-keto reductase family 1, member C1 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr17:69,441,253...69,460,334
Ensembl chr17:69,441,223...69,460,321
JBrowse link
G C1qbp complement C1q binding protein ISO
IBA
ISS
(PMID:10022843)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10022843, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:57,613,876...57,618,527
Ensembl chr10:57,613,879...57,618,527
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A ISO (MGI:5317240|PMID:21470964) RGD PMID:21470964 MGI:5317240 NCBI chr11:34,858,339...34,958,733
Ensembl chr11:34,865,532...34,956,536
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO
IEA
(MGI:3814796|PMID:18480465)
GO_REF:0000107
RGD
Ensembl
PMID:18480465 GO_REF:0000107 MGI:3814796 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO
IEA
(MGI:5532638|PMID:23636947)
GO_REF:0000107
RGD
Ensembl
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L IMP RGD PMID:22570490 RGD:9999428 NCBI chr 1:86,994,090...87,006,776
Ensembl chr 1:86,996,093...87,006,776
JBrowse link
G Npm1 nucleophosmin 1 ISO (MGI:3615094|PMID:16376875) RGD PMID:16376875 MGI:3615094 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Pcbp4 poly(rC) binding protein 4 ISO
IBA
(MGI:5532638|PMID:23636947)
PMID:21873635
RGD PMID:23636947, PMID:21873635 MGI:5532638, RGD:13792537 NCBI chr 8:115,154,848...115,165,706
Ensembl chr 8:115,155,470...115,165,706
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO
IBA
ISS
(PMID:15009664)
PMID:21873635
(MGI:5532638|PMID:23636947), (MGI:6271441|PMID:17679093)
GO_REF:0000024
RGD
UniProt
PMID:15009664 PMID:17679093 PMID:23636947, PMID:21873635 GO_REF:0000024 MGI:5532638 MGI:6271441, RGD:13792537 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 ISO
IBA
(MGI:5532638|PMID:23636947)
PMID:21873635
RGD PMID:23636947, PMID:21873635 MGI:5532638, RGD:13792537 NCBI chr 5:76,670,074...76,756,196
Ensembl chr 5:76,673,990...76,756,147
JBrowse link
G Rbm10 RNA binding motif protein 10 IEA
ISO
GO_REF:0000107
(MGI:5532638|PMID:23636947)
Ensembl
RGD
PMID:23636947 GO_REF:0000107 MGI:5532638 NCBI chr  X:1,754,869...1,786,973
Ensembl chr  X:1,754,861...1,786,978
JBrowse link
G Rbm42 RNA binding motif protein 42 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 1:89,099,296...89,109,248
Ensembl chr 1:89,099,277...89,109,230
JBrowse link
G Rbmxl1 RBMX like 1 IDA PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chr19:33,081,473...33,084,988
Ensembl chr19:33,083,412...33,084,915
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO
ISS
(PMID:12665594)
GO_REF:0000024
RGD
UniProt
PMID:12665594 GO_REF:0000024 NCBI chr10:13,786,339...13,796,720
Ensembl chr10:13,786,459...13,796,717
JBrowse link
G Sap18 Sin3A associated protein 18 ISO (PMID:12665594) RGD PMID:12665594 NCBI chr15:38,069,320...38,073,625
Ensembl chr15:38,069,320...38,073,622
JBrowse link
G Sfswap splicing factor SWAP IDA PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chr12:30,740,563...30,811,015
Ensembl chr12:30,740,520...30,811,054
JBrowse link
G Smptb polypyrimidine tract-binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:17,484,839...17,486,721
Ensembl chr  X:17,484,839...17,486,721
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO (PMID:11684676)
(MGI:3688015|PMID:11684676)
RGD PMID:11684676 MGI:3688015 NCBI chr 5:154,205,358...154,219,550
Ensembl chr 5:154,205,402...154,213,801
JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr 5:150,032,999...150,060,769
Ensembl chr 5:150,032,999...150,060,765
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr 3:159,305,345...159,310,668
Ensembl chr 3:159,305,345...159,310,668
JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr 6:2,879,312...2,886,505
Ensembl chr 6:2,880,518...2,886,465
JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 ISO
ISS
(PMID:15009664)
GO_REF:0000024
RGD
UniProt
PMID:15009664 GO_REF:0000024 NCBI chr12:47,039,714...47,046,022
Ensembl chr12:47,039,716...47,046,022
JBrowse link
G Tra2b transformer 2 beta homolog ISO (MGI:5304203|PMID:22194695) RGD PMID:22194695 MGI:5304203 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr 1:72,312,260...72,329,828
Ensembl chr 1:72,312,727...72,329,856
JBrowse link
negative regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 IMP RGD PMID:19116344 RGD:2313309 NCBI chr 1:84,400,939...84,451,223
Ensembl chr 1:84,411,726...84,450,162
JBrowse link
G LOC100361854 ribosomal protein S26-like ISO (PMID:15716004) RGD PMID:15716004 NCBI chr  X:115,495,660...115,496,062
Ensembl chr  X:115,495,698...115,496,045
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO (PMID:18335065) RGD PMID:18335065 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 IMP
IBA
ISO
PMID:21873635
(PMID:18335065)
RGD PMID:18335065, PMID:18534753, PMID:21873635 RGD:10045970, RGD:13792537 NCBI chr 2:223,261,444...223,323,075
Ensembl chr 2:223,262,852...223,322,585
JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 IEA
ISO
GO_REF:0000107
(PMID:18335065)
Ensembl
RGD
PMID:18335065 GO_REF:0000107 NCBI chr 5:76,670,074...76,756,196
Ensembl chr 5:76,673,990...76,756,147
JBrowse link
G Rps13 ribosomal protein S13 ISO (PMID:17881366) RGD PMID:17881366 NCBI chr 1:185,328,902...185,331,332
Ensembl chr 3:4,341,249...4,341,771
JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 IEA
ISO
GO_REF:0000107
(MGI:3840374|PMID:19328063)
(PMID:19328063)
Ensembl
RGD
PMID:19328063 GO_REF:0000107 MGI:3840374 NCBI chr 7:141,039,433...141,070,269
Ensembl chr 7:141,034,982...141,069,989
JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07061152.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:106,982,503...106,983,279 JBrowse link
G Celf3 CUGBP, Elav-like family member 3 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr 2:195,716,373...195,732,872
Ensembl chr 2:195,719,543...195,730,274
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 ISO (PMID:15009664) RGD PMID:15009664 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Cirbp cold inducible RNA binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Dazap1 DAZ associated protein 1 ISO
IBA
(MGI:5532638|PMID:23636947)
PMID:21873635
RGD PMID:23636947, PMID:21873635 MGI:5532638, RGD:13792537 NCBI chr 7:12,289,895...12,315,897
Ensembl chr 7:12,290,402...12,311,149
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO (MGI:3814796|PMID:18480465) RGD PMID:18480465 MGI:3814796 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Hmx2 H6 family homeobox 2 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 1:203,515,605...203,523,266
Ensembl chr 1:203,515,609...203,523,358
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Lmntd2 lamin tail domain containing 2 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 1:214,197,126...214,202,828
Ensembl chr 1:214,196,430...214,202,853
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO (PMID:23793891) RGD PMID:23793891 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncl nucleolin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Nup98 nucleoporin 98 and 96 precursor ISO
ISS
(PMID:28221134)
GO_REF:0000024
RGD
UniProt
PMID:28221134 GO_REF:0000024 NCBI chr 1:167,213,866...167,308,851
Ensembl chr 1:167,213,866...167,308,851
JBrowse link
G Obi1 ORC ubiquitin ligase 1 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr15:88,632,089...88,670,325
Ensembl chr15:88,631,794...88,670,349
JBrowse link
G Prdx6 peroxiredoxin 6 ISO UniProtKB:Q8IWL8 (PMID:16186110) RGD PMID:16186110 NCBI chr13:79,077,567...79,088,113
Ensembl chr13:79,077,033...79,088,127
JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO (MGI:3814796|PMID:18480465) RGD PMID:18480465 MGI:3814796 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Rbm3 RNA binding motif protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:15,098,880...15,102,344
Ensembl chr  X:15,098,904...15,102,340
JBrowse link
G Rbmx RNA binding motif protein, X-linked IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:159,881,835...159,891,405
Ensembl chr  X:159,884,885...159,891,326
JBrowse link
G Rbmxl1 RBMX like 1 IDA
IBA
PMID:19282290
PMID:21873635
UniProt
GO_Central
PMID:19282290, PMID:21873635 RGD:2316827, RGD:13792537 NCBI chr19:33,081,473...33,084,988
Ensembl chr19:33,083,412...33,084,915
JBrowse link
G Rbmxl1b RNA binding motif protein, X-linked-like 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:42,186,612...42,188,294
Ensembl chr 4:42,186,612...42,188,289
JBrowse link
G Rbmy1j RNA binding motif protein, Y-linked, family 1, member J IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  Y:380,337...390,669
Ensembl chr  Y:380,382...390,667
JBrowse link
G Sf3b4 splicing factor 3b, subunit 4 ISO
IBA
(MGI:5532638|PMID:23636947)
PMID:21873635
RGD PMID:23636947, PMID:21873635 MGI:5532638, RGD:13792537 NCBI chr 2:198,312,428...198,317,180
Ensembl chr 2:198,312,428...198,317,180
JBrowse link
G Slc39a5 solute carrier family 39 member 5 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 7:2,813,875...2,819,917
Ensembl chr 7:2,813,875...2,819,299
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 1:101,367,470...101,388,153
Ensembl chr 1:101,367,471...101,388,129
JBrowse link
G Snw1 SNW domain containing 1 ISO (PMID:12840015) RGD PMID:12840015 NCBI chr 6:111,483,698...111,507,782
Ensembl chr 6:111,483,703...111,507,782
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:20123736)
GO_REF:0000024
RGD
UniProt
PMID:20123736 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Tra2a transformer 2 alpha homolog ISO
IBA
(MGI:5304203|PMID:22194695)
PMID:21873635
RGD PMID:22194695, PMID:21873635 MGI:5304203, RGD:13792537 NCBI chr 4:78,905,380...78,924,203
Ensembl chr 4:78,905,380...78,924,181
JBrowse link
G Tra2b transformer 2 beta homolog ISO
IBA
ISS
(PMID:15009664)
PMID:21873635
MGI:2176173|MGI:4450919 (MGI:5304203|PMID:22194695)
GO_REF:0000024
RGD
UniProt
PMID:15009664 PMID:22194695, PMID:21873635 GO_REF:0000024 MGI:5304203, RGD:13792537 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
G Zfp64 zinc finger protein 64 ISO (MGI:5532638|PMID:23636947) RGD PMID:23636947 MGI:5532638 NCBI chr 3:165,713,070...165,741,932
Ensembl chr 3:165,713,020...165,741,967
JBrowse link
positive regulation of RNA splicing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A ISO
IMP
(PMID:28377597) RGD PMID:28377597, PMID:28377597 RGD:13464257 NCBI chr11:34,858,339...34,958,733
Ensembl chr11:34,865,532...34,956,536
JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 ISO (PMID:11779464), (PMID:19622636)
(MGI:6114871|PMID:25164867)
RGD PMID:11779464 PMID:19622636 PMID:25164867 MGI:6114871 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
G Habp4 hyaluronan binding protein 4 ISO
IBA
ISS
(PMID:19523114)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:19523114, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr17:1,679,561...1,702,245
Ensembl chr17:1,679,627...1,701,623
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IMP RGD PMID:22684629 RGD:10002775 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like ISO
IBA
(PMID:18669861)
PMID:21873635
RGD PMID:18669861, PMID:21873635 RGD:13792537 NCBI chr 6:2,698,983...2,729,715
Ensembl chr 6:2,699,961...2,729,394
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A ISO (PMID:20625543) RGD PMID:20625543 NCBI chr20:4,875,834...4,881,751
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B ISO (PMID:20625543) RGD PMID:20625543 NCBI chr20:4,877,638...4,880,112
Ensembl chr20:2,699,712...2,701,815
JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IMP RGD PMID:11118435 RGD:632715 NCBI chr 7:110,031,819...110,179,475
Ensembl chr 7:110,031,696...110,179,468
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:20348923)
Ensembl
UniProt
RGD
PMID:20348923 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:31,742,326...31,826,882
Ensembl chr 2:31,745,088...31,826,867
JBrowse link
G Polr2a RNA polymerase II subunit A ISO (PMID:21536736) RGD PMID:21536736 NCBI chr10:56,339,277...56,364,888
Ensembl chr10:56,339,284...56,365,084
JBrowse link
G Rbm20 RNA binding motif protein 20 IMP
IBA
ISO
PMID:22466703
PMID:21873635
(MGI:5442495|PMID:22466703)
(PMID:22466703)
RGD PMID:22466703, PMID:22466703, PMID:21873635 MGI:5442495, RGD:7241566, RGD:13792537 NCBI chr 1:274,391,932...274,589,816
Ensembl chr 1:274,391,932...274,589,816
JBrowse link
G Rbm22 RNA binding motif protein 22 ISO
ISS
(PMID:22246180)
GO_REF:0000024
RGD
UniProt
PMID:22246180 GO_REF:0000024 NCBI chr18:55,828,158...55,839,421
Ensembl chr18:55,828,158...55,838,966
JBrowse link
G Setx senataxin ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
G Slc38a2 solute carrier family 38, member 2 ISO UniProtKB:P17861 (PMID:22215663) RGD PMID:22215663 NCBI chr 7:138,088,654...138,100,869
Ensembl chr 7:138,088,649...138,100,841
JBrowse link
G Smn1 survival of motor neuron 1, telomeric IEA
ISO
GO_REF:0000107
(MGI:5318917|PMID:22037760)
Ensembl
RGD
PMID:22037760 GO_REF:0000107 MGI:5318917 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 IMP RGD PMID:16308321 RGD:11038784 NCBI chr10:75,334,200...75,341,197
Ensembl chr10:75,335,146...75,341,197
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 IMP RGD PMID:9199345 RGD:11039429 NCBI chr 6:104,611,026...104,640,033
Ensembl chr 6:104,611,026...104,615,302
JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 ISO (PMID:21536736) RGD PMID:21536736 NCBI chr 1:72,312,260...72,329,828
Ensembl chr 1:72,312,727...72,329,856
JBrowse link
G Zpr1 ZPR1 zinc finger ISO (PMID:11283611) RGD PMID:11283611 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037800.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:31,054,394...31,055,344 JBrowse link
G AABR07051190.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:260,653...262,124 JBrowse link
G AABR07055789.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:10,064,414...10,068,532 JBrowse link
G AABR07065078.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:107,156,263...107,164,033 JBrowse link
G Celf1 CUGBP, Elav-like family member 1 ISO
IBA
(MGI:6402838|PMID:32109384)
PMID:21873635
RGD PMID:32109384, PMID:21873635 MGI:6402838, RGD:13792537 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:75,259,269...75,660,154
Ensembl chr17:75,352,389...75,654,951
JBrowse link
G Celf3 CUGBP, Elav-like family member 3 ISO
IBA
(PMID:11158314)
PMID:21873635
RGD PMID:11158314, PMID:21873635 RGD:13792537 NCBI chr 2:195,716,373...195,732,872
Ensembl chr 2:195,719,543...195,730,274
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 ISO
IBA
(PMID:11158314), (PMID:19720736)
PMID:21873635
RGD PMID:11158314 PMID:19720736, PMID:21873635 RGD:13792537 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Celf5 CUGBP, Elav-like family member 5 ISO
IBA
(PMID:11158314)
PMID:21873635
RGD PMID:11158314, PMID:21873635 RGD:13792537 NCBI chr 7:11,095,449...11,119,941
Ensembl chr 7:11,095,468...11,119,941
JBrowse link
G Celf6 CUGBP, Elav-like family member 6 ISO
IBA
(PMID:14761971)
PMID:21873635
RGD PMID:14761971, PMID:21873635 RGD:13792537 NCBI chr 8:64,364,491...64,428,452
Ensembl chr 8:64,364,741...64,428,386
JBrowse link
G Ddx17 DEAD-box helicase 17 ISO (PMID:23022728)
(MGI:5819339|PMID:23022728)
RGD PMID:23022728 MGI:5819339 NCBI chr 7:120,761,843...120,765,012
Ensembl chr 7:120,761,826...120,780,641
JBrowse link
G Ddx5 DEAD-box helicase 5 ISO (PMID:21343338), (PMID:23022728)
(MGI:5819339|PMID:23022728)
RGD PMID:21343338 PMID:23022728 MGI:5819339 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A IDA PMID:22767602 UniProt PMID:22767602 RGD:8554210 NCBI chr11:34,858,339...34,958,733
Ensembl chr11:34,865,532...34,956,536
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Fam172a family with sequence similarity 172, member A ISO (MGI:6113784|PMID:29311329) RGD PMID:29311329 MGI:6113784 NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
JBrowse link
G Fblim1 filamin binding LIM protein 1 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:160,122,466...160,158,921
Ensembl chr 5:160,122,425...160,158,386
JBrowse link
G Fmr1 FMRP translational regulator 1 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(MGI:5009520|PMID:18653529)
GO_REF:0000024
(PMID:18653529)
Ensembl
RGD
UniProt
PMID:18653529, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5009520, RGD:13792537 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:120,529,716...120,570,356
Ensembl chr 2:120,512,899...120,570,355
JBrowse link
G Fxr2 FMR1 autosomal homolog 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,237,814...56,257,877
Ensembl chr10:56,237,755...56,257,890
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO
IEA
(PMID:25689357)
GO_REF:0000107
RGD
Ensembl
PMID:25689357 GO_REF:0000107 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO
IBA
ISS
(PMID:25623890)
PMID:21873635
(MGI:5441689|PMID:22523384)
GO_REF:0000024
RGD
UniProt
PMID:22523384 PMID:25623890, PMID:21873635 GO_REF:0000024 MGI:5441689, RGD:13792537 NCBI chr 1:86,994,090...87,006,776
Ensembl chr 1:86,996,093...87,006,776
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:22325991)
Ensembl
RGD
PMID:22325991, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Ik IK cytokine IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:29,587,901...29,602,705
Ensembl chr18:29,587,901...29,608,338
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 ISS
IBA
IDA
ISO
GO_REF:0000024
PMID:21873635
PMID:15345239
(PMID:24514149)
UniProt
RGD
PMID:24514149, PMID:21873635, PMID:15345239 GO_REF:0000024, RGD:13792537, RGD:1358238 NCBI chr 5:147,927,145...147,953,093
Ensembl chr 5:147,927,152...147,953,093
JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:39,501,431...40,008,707
Ensembl chr 9:39,539,530...40,008,680
JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IDA
IBA
PMID:15345239
PMID:21873635
UniProt
GO_Central
PMID:15345239, PMID:21873635 RGD:1358238, RGD:13792537 NCBI chr 7:110,031,819...110,179,475
Ensembl chr 7:110,031,696...110,179,468
JBrowse link
G LOC108348175 protein quaking-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:50,828,585...50,936,459 JBrowse link
G LOC108348453 calsequestrin-1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,440,153...6,467,211
Ensembl chr16:6,434,468...6,478,396
JBrowse link
G Magoh mago homolog, exon junction complex subunit ISO
ISS
(PMID:22203037)
GO_REF:0000024
RGD
UniProt
PMID:22203037 GO_REF:0000024 NCBI chr 5:127,480,465...127,487,617
Ensembl chr 5:127,480,485...127,487,603
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:150,698,248...150,867,791
Ensembl chr 2:150,756,185...150,869,690
JBrowse link
G Mbnl2 muscleblind-like splicing regulator 2 ISO
IBA
(MGI:5009479|PMID:19720736)
PMID:21873635
RGD PMID:19720736, PMID:21873635 MGI:5009479, RGD:13792537 NCBI chr15:105,640,097...105,797,933
Ensembl chr15:105,640,097...105,797,932
JBrowse link
G Mbnl3 muscleblind-like splicing regulator 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:138,378,674...138,473,365
Ensembl chr  X:138,384,912...138,435,391
JBrowse link
G Myod1 myogenic differentiation 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:1202143|PMID:9525963)
Ensembl
RGD
PMID:9525963, PMID:9525963 GO_REF:0000107 MGI:1202143, RGD:8553451 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
G Nova1 NOVA alternative splicing regulator 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:66,960,126...67,085,836
Ensembl chr 6:66,963,510...67,085,390
JBrowse link
G Nova2 NOVA alternative splicing regulator 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:79,831,737...79,866,147
Ensembl chr 1:79,831,534...79,865,807
JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 ISO
ISS
(PMID:21296756)
GO_REF:0000024
RGD
UniProt
PMID:21296756 GO_REF:0000024 NCBI chr10:63,098,115...63,131,779
Ensembl chr10:63,098,116...63,133,185
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISS
ISO
GO_REF:0000024
(PMID:16260624), (PMID:21518792)
UniProt
RGD
PMID:16260624 PMID:21518792 GO_REF:0000024 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Puf60 poly-U binding splicing factor 60 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,129,237...117,140,234
Ensembl chr 7:117,129,237...117,140,214
JBrowse link
G Qk quaking IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:50,983,647...51,050,692 JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 ISO
IBA
(MGI:5476405|PMID:23300487)
PMID:21873635
RGD PMID:23300487, PMID:21873635 MGI:5476405, RGD:13792537 NCBI chr10:8,312,961...10,437,778
Ensembl chr10:8,312,961...8,654,892
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 ISO
IBA
MGI:1926224|MGI:4838182 (MGI:3770484|PMID:17715393), (MGI:5284784|PMID:17101796), (MGI:5312167|PMID:22357600)
PMID:21873635
RGD PMID:17101796 PMID:17715393 PMID:22357600, PMID:21873635 MGI:3770484 MGI:5284784 MGI:5312167, RGD:13792537 NCBI chr 7:118,157,093...118,396,733
Ensembl chr 7:118,156,946...118,396,728
JBrowse link
G Rbfox3 RNA binding fox-1 homolog 3 ISO
IBA
(MGI:5140633|PMID:21747913)
PMID:21873635
RGD PMID:21747913, PMID:21873635 MGI:5140633, RGD:13792537 NCBI chr10:107,517,916...107,850,764
Ensembl chr10:107,516,995...107,539,658
JBrowse link
G Rbm10 RNA binding motif protein 10 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:1,754,869...1,786,973
Ensembl chr  X:1,754,861...1,786,978
JBrowse link
G Rbm11 RNA binding motif protein 11 ISO
IBA
(PMID:21984414)
PMID:21873635
RGD PMID:21984414, PMID:21873635 RGD:13792537 NCBI chr11:14,005,704...14,015,723
Ensembl chr11:14,005,732...14,014,962
JBrowse link
G Rbm15 RNA binding motif protein 15 ISO (PMID:26575292)
(MGI:6158801|PMID:25468569)
RGD PMID:25468569 PMID:26575292 MGI:6158801 NCBI chr 2:210,079,678...210,090,200
Ensembl chr 2:210,081,770...210,088,949
JBrowse link
G Rbm15b RNA binding motif protein 15B ISO
IBA
(PMID:16129689)
PMID:21873635
RGD PMID:16129689, PMID:21873635 RGD:13792537 NCBI chr 8:115,618,242...115,623,068
Ensembl chr 8:115,618,555...115,621,394
JBrowse link
G Rbm17 RNA binding motif protein 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:70,586,345...70,603,289
Ensembl chr17:70,586,394...70,603,267
JBrowse link
G Rbm19 RNA binding motif protein 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,907,978...41,993,969
Ensembl chr12:41,907,740...41,993,957
JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:26844700), (PMID:26990106), (PMID:29104163)
(MGI:6148527|PMID:25313962)
RGD PMID:25313962 PMID:26844700 PMID:26990106 PMID:29104163 MGI:6148527 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rbm25 RNA binding motif protein 25 ISO (PMID:18663000) RGD PMID:18663000 NCBI chr 6:107,117,888...107,165,538 JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:10,457,316...10,460,540
Ensembl chr10:10,457,320...10,460,756
JBrowse link
G Rbm4 RNA binding motif protein 4 ISO (PMID:12628928), (PMID:16260624), (PMID:16777844), (PMID:16934801), (PMID:21518792)
MGI:5467987|MGI:5467988 (MGI:5466631|PMID:23129807)
RGD PMID:12628928 PMID:16260624 PMID:16777844 PMID:16934801 PMID:21518792 PMID:23129807 MGI:5466631 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Rbm4b RNA binding motif protein 4B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,009,397...220,019,488
Ensembl chr 1:220,009,397...220,019,486
JBrowse link
G Rbm5 RNA binding motif protein 5 ISS
ISO
GO_REF:0000024
(PMID:18840686), (PMID:18951082)
UniProt
RGD
PMID:18840686 PMID:18951082 GO_REF:0000024 NCBI chr 8:116,502,941...116,532,178
Ensembl chr 8:116,502,937...116,532,169
JBrowse link
G Rbm7 RNA binding motif protein 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:52,823,094...52,828,134
Ensembl chr 8:52,823,096...52,828,134
JBrowse link
G Rbm8a RNA binding motif protein 8A ISO
IBA
ISS
(PMID:22203037)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22203037, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:198,755,261...198,758,028
Ensembl chr 2:198,755,262...198,758,028
JBrowse link
G Rbmx RNA binding motif protein, X-linked ISO (PMID:12165565), (PMID:12761049) RGD PMID:12165565 PMID:12761049 NCBI chr  X:159,881,835...159,891,405
Ensembl chr  X:159,884,885...159,891,326
JBrowse link
G Rbmxl1 RBMX like 1 IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:33,081,473...33,084,988
Ensembl chr19:33,083,412...33,084,915
JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO
GO_REF:0000024
(MGI:6201823|PMID:21884984)
UniProt
RGD
PMID:21884984 GO_REF:0000024 MGI:6201823 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO
IBA
ISS
(PMID:22203037)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22203037, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:13,786,339...13,796,720
Ensembl chr10:13,786,459...13,796,717
JBrowse link
G Sap18 Sin3A associated protein 18 ISO (PMID:20966198), (PMID:22203037) RGD PMID:20966198 PMID:22203037 NCBI chr15:38,069,320...38,073,625
Ensembl chr15:38,069,320...38,073,622
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
G Sf1 splicing factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,735,512...221,749,216
Ensembl chr 1:221,735,517...221,749,086
JBrowse link
G Smu1 SMU1, DNA replication regulator and spliceosomal factor ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:57,042,301...57,061,379
Ensembl chr 5:57,042,705...57,061,365
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO (PMID:29961578)
MGI:1856676 (MGI:5468890|PMID:23055939), (MGI:6201863|PMID:25727884)
RGD PMID:23055939 PMID:25727884 PMID:29961578 MGI:5468890 MGI:6201863 NCBI chr12:45,726,192...45,884,644
Ensembl chr12:45,727,112...45,882,548
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:75,334,200...75,341,197
Ensembl chr10:75,335,146...75,341,197
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:154,205,358...154,219,550
Ensembl chr 5:154,205,402...154,213,801
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 ISO
IBA
(PMID:11684676)
PMID:21873635
RGD PMID:11684676, PMID:21873635 RGD:13792537 NCBI chr 5:48,456,777...48,484,017
Ensembl chr 5:48,456,757...48,485,912
JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO
IBA
(MGI:5317240|PMID:21470964)
PMID:21873635
RGD PMID:21470964, PMID:21873635 MGI:5317240, RGD:13792537 NCBI chr10:105,792,779...105,795,986
Ensembl chr10:105,792,779...105,795,958
JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:6,288,285...6,298,218
Ensembl chr20:6,288,267...6,298,213
JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:150,032,999...150,060,769
Ensembl chr 5:150,032,999...150,060,765
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:104,611,026...104,640,033
Ensembl chr 6:104,611,026...104,615,302
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23132731), (PMID:24440982)
UniProt
RGD
PMID:23132731 PMID:24440982, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:159,305,345...159,310,668
Ensembl chr 3:159,305,345...159,310,668
JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:2,879,312...2,886,505
Ensembl chr 6:2,880,518...2,886,465
JBrowse link
G Srsf8 serine and arginine rich splicing factor 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:49,529,525...49,530,166
NCBI chr  X:49,644,973...49,705,870
Ensembl chr  X:49,529,318...49,530,166
JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:47,039,714...47,046,022
Ensembl chr12:47,039,716...47,046,022
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:20932480)
GO_REF:0000024
RGD
UniProt
PMID:20932480 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Tra2b transformer 2 beta homolog ISS
ISO
GO_REF:0000024
(PMID:12165565), (PMID:12761049), (PMID:25689357)
UniProt
RGD
PMID:12165565 PMID:12761049 PMID:25689357 GO_REF:0000024 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link
G Wtap WT1 associated protein ISO
IBA
(PMID:24407421)
PMID:21873635
RGD PMID:24407421, PMID:21873635 RGD:13792537 NCBI chr 1:47,942,500...47,967,633
Ensembl chr 1:47,942,500...47,967,631
JBrowse link
G Ythdc1 YTH domain containing 1 ISO
IBA
(MGI:6161521|PMID:29799838)
PMID:21873635
RGD PMID:29799838, PMID:21873635 MGI:6161521, RGD:13792537 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a ISS
ISO
IEA
GO_REF:0000024
(PMID:24514149)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24514149 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:11,429,266...11,446,119
Ensembl chr 7:11,432,049...11,444,786
JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:2,968,428...2,972,521
Ensembl chr 7:2,968,435...2,972,521
JBrowse link
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO
ISS
(PMID:19574390)
(MGI:4940413|PMID:21300889)
GO_REF:0000024
RGD
UniProt
PMID:19574390 PMID:21300889 GO_REF:0000024 MGI:4940413 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 ISO (MGI:5302133|PMID:22196734) RGD PMID:22196734 MGI:5302133 NCBI chr 5:147,927,145...147,953,093
Ensembl chr 5:147,927,152...147,953,093
JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 ISO (MGI:5302133|PMID:22196734) RGD PMID:22196734 MGI:5302133 NCBI chr 9:39,501,431...40,008,707
Ensembl chr 9:39,539,530...40,008,680
JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IEA
ISO
GO_REF:0000107
(MGI:5302133|PMID:22196734)
Ensembl
RGD
PMID:22196734 GO_REF:0000107 MGI:5302133 NCBI chr 7:110,031,819...110,179,475
Ensembl chr 7:110,031,696...110,179,468
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator ISS
ISO
IEA
GO_REF:0000024
(MGI:6400674|PMID:32017896)
GO_REF:0000107
(PMID:32017898)
UniProt
RGD
Ensembl
PMID:32017896 PMID:32017898 GO_REF:0000024 GO_REF:0000107 MGI:6400674 NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
JBrowse link
G LOC100359916 heterogeneous nuclear ribonucleoprotein K-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,911,439...59,913,324
Ensembl chr 5:59,911,431...59,913,348
JBrowse link
G LOC100910882 RNA-binding protein 39-like ISO (PMID:15694343) RGD PMID:15694343 NCBI chr 3:152,226,011...152,259,236
Ensembl chr 3:151,691,514...151,724,654
Ensembl chr 3:151,691,514...151,724,654
JBrowse link
G Mettl16 methyltransferase like 16 NOT ISO (PMID:28525753)
(MGI:6114846|PMID:29262316)
RGD PMID:28525753 PMID:29262316 MGI:6114846 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Rbm39 RNA binding motif protein 39 ISO (PMID:15694343), (PMID:28302793), (PMID:28437394) RGD PMID:15694343 PMID:28302793 PMID:28437394 NCBI chr 3:151,691,498...151,724,723
Ensembl chr 3:151,691,514...151,724,654
JBrowse link
G RGD1305178 similar to Hypothetical protein MGC11690 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:9,813,914...9,822,222
Ensembl chr 3:9,813,912...9,822,186
JBrowse link
G Son SON DNA and RNA binding protein ISO
IBA
(PMID:21504830)
PMID:21873635
RGD PMID:21504830, PMID:21873635 RGD:13792537 NCBI chr11:31,806,598...31,837,769
Ensembl chr11:31,806,618...31,837,763
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO (PMID:26876937) RGD PMID:26876937 NCBI chr 5:154,205,358...154,219,550
Ensembl chr 5:154,205,402...154,213,801
JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 ISO (PMID:26876937) RGD PMID:26876937 NCBI chr20:6,288,285...6,298,218
Ensembl chr20:6,288,267...6,298,213
JBrowse link
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein ISO (PMID:11106748) RGD PMID:11106748 NCBI chr 4:118,207,845...118,238,246
Ensembl chr 4:118,207,862...118,235,218
JBrowse link
G Ythdc1 YTH domain containing 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:26876937), (PMID:28984244)
UniProt
RGD
PMID:26876937 PMID:28984244, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      regulation of metabolic process 6915
        regulation of macromolecule metabolic process 6392
          regulation of gene expression 4857
            regulation of RNA splicing 172
              negative regulation of RNA splicing + 31
              positive regulation of RNA splicing + 47
              regulation of mRNA splicing, via spliceosome + 124
Path 2
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      cellular metabolic process 11041
        cellular aromatic compound metabolic process 5711
          nucleobase-containing compound metabolic process 5499
            nucleic acid metabolic process 4989
              RNA metabolic process 4474
                RNA processing 925
                  RNA splicing 395
                    regulation of RNA splicing 172
                      negative regulation of RNA splicing + 31
                      positive regulation of RNA splicing + 47
                      regulation of mRNA splicing, via spliceosome + 124
paths to the root