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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


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pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330543|PMID:9931340) MGI
Ensembl
PMID:9931340 GO_REF:0000107 MGI:1330543 NCBI chrNW_004936549:5,964,240...6,205,245
Ensembl chrNW_004936549:5,965,143...6,204,379
JBrowse link
G Arcn1 archain 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4454933|PMID:20502676) MGI
Ensembl
PMID:20502676 GO_REF:0000107 MGI:4454933 NCBI chrNW_004936542:3,605,553...3,634,889
Ensembl chrNW_004936542:3,617,051...3,633,132
JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:61184|PMID:17247639) MGI
Ensembl
PMID:17247639 GO_REF:0000107 MGI:61184 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:53940|PMID:4858102)
(MGI:3616522|PMID:16338116)
(MGI:53773|PMID:4561716)
(MGI:50550|PMID:1752214), (MGI:53908|PMID:4670054)
(MGI:71790|PMID:2473662)
MGI PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 More... MGI:3616522 MGI:50550 MGI:53773 MGI:53908 MGI:53940 MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:71790 MGI:72704 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Bcl2 BCL2 apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3522060|PMID:15265785), (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223) MGI
Ensembl
PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 GO_REF:0000107 MGI:3522060 MGI:55273 MGI:56449 MGI:77039 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:7089489 GO_REF:0000107 MGI:55273 MGI:77000 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353
JBrowse link
G Cd63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:196,002...199,177
Ensembl chrNW_004936646:191,128...199,777
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:50485|PMID:1537334) MGI
Ensembl
PMID:1537334 GO_REF:0000107 MGI:50485 NCBI chrNW_004936472:15,074,947...15,110,427
Ensembl chrNW_004936472:15,074,633...15,110,534
JBrowse link
G Dock7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821) MGI PMID:2379821 MGI:77000 NCBI chrNW_004936692:161,979...354,028
Ensembl chrNW_004936692:162,390...353,721
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3576468|PMID:9140068) MGI
Ensembl
PMID:9140068 GO_REF:0000107 MGI:3576468 NCBI chrNW_004936612:1,094,686...1,154,149
Ensembl chrNW_004936612:1,094,680...1,154,798
JBrowse link
G Eda ectodysplasin A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53773|PMID:4561716) MGI
Ensembl
PMID:4561716 GO_REF:0000107 MGI:53773 MGI:65389 NCBI chrNW_004936777:1,545,293...1,561,109
Ensembl chrNW_004936777:1,238,272...1,557,410
JBrowse link
G Edar ectodysplasin A receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:54784|PMID:544312) MGI
Ensembl
PMID:544312 GO_REF:0000107 MGI:54784 NCBI chrNW_004936829:429,667...458,943
Ensembl chrNW_004936829:429,561...458,943
JBrowse link
G Ednrb endothelin receptor type B involved_in
acts_upstream_of_or_within
ISO
IEA
homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
(MGI:77000|PMID:2379821)
RGD
Ensembl
MGI
PMID:2379821 PMID:8570650 GO_REF:0000107 MGI:77000 RGD:628515 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463) MGI PMID:9362463 MGI:1194987 NCBI chrNW_004936469:51,439,944...51,451,194 JBrowse link
G Fig4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3715385|PMID:17572665), (MGI:5296993|PMID:22028665) MGI
Ensembl
PMID:17572665 PMID:22028665 GO_REF:0000107 MGI:3715385 MGI:5296993 NCBI chrNW_004936564:5,736,908...5,842,210
Ensembl chrNW_004936564:5,736,873...5,842,722
JBrowse link
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chrNW_004936636:1,407,666...1,430,683
Ensembl chrNW_004936636:1,410,589...1,430,124
JBrowse link
G Hps3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chrNW_004936519:6,470,077...6,530,897
Ensembl chrNW_004936519:6,466,212...6,499,101
JBrowse link
G Hps5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chrNW_004936528:940,372...980,867
Ensembl chrNW_004936528:939,793...981,042
JBrowse link
G Hps6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3522060|PMID:15265785), (MGI:61184|PMID:17247639)
(MGI:77000|PMID:2379821)
Ensembl
MGI
PMID:2379821 PMID:15265785 PMID:17247639 GO_REF:0000107 MGI:3522060 MGI:61184 MGI:77000 NCBI chrNW_004936600:3,754,324...3,757,048
Ensembl chrNW_004936600:3,754,460...3,756,880
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1351242|PMID:10620616) MGI
Ensembl
PMID:10620616 GO_REF:0000107 MGI:1351242 NCBI chrNW_004936482:17,162,854...17,238,319
Ensembl chrNW_004936482:17,162,950...17,238,274
JBrowse link
G KRT76 keratin 76 involved_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936512:10,139,663...10,148,630 JBrowse link
G Lyst lysosomal trafficking regulator involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:73117|PMID:13943454)
(MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223)
RGD
Ensembl
MGI
PMID:2513223 PMID:4031470 PMID:7089489 PMID:12638234 PMID:13943454 GO_REF:0000107 MGI:55273 MGI:56449 MGI:73117 MGI:77039 RGD:1302441 NCBI chrNW_004936484:16,750,976...16,915,999
Ensembl chrNW_004936484:16,763,511...16,916,022
JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO MGI MGI:87265 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI MGI:60250 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125
JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180980|PMID:12086670)
(MGI:77000|PMID:2379821)
MGI
Ensembl
PMID:2379821 PMID:12086670 GO_REF:0000107 MGI:2180980 MGI:77000 NCBI chrNW_004936603:1,682,411...1,858,295
Ensembl chrNW_004936603:1,682,513...1,858,173
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:17247639 MGI:61184 MGI:77000 NCBI chrNW_004936525:776,102...821,067
Ensembl chrNW_004936525:775,955...821,085
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:3141922 PMID:7828830 GO_REF:0000107 MGI:68399 MGI:68866 MGI:77000 NCBI chrNW_004936586:1,203,520...1,261,341
Ensembl chrNW_004936586:1,203,367...1,261,421
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3712581|PMID:17523175) MGI PMID:17523175 MGI:3712581 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873)
(MGI:1203760|PMID:9560409)
(MGI:73808|PMID:3422417)
PMID:10920234
(MGI:55563|PMID:6305507)
(MGI:1203759|PMID:9560408), (MGI:5569175|PMID:24721909)
(MGI:56220|PMID:6098826), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:68866|PMID:7828830), (MGI:73393|PMID:7774591), (MGI:77000|PMID:2379821)
(MGI:68399|PMID:3141922)
MGI PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 More... MGI:1203759 MGI:1203760 MGI:55563 MGI:5569175 MGI:56220 MGI:5779494 MGI:60423 MGI:61184 MGI:61192 MGI:68399 MGI:68866 MGI:73393 MGI:73808 MGI:77000 RGD:61493 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Mysm1 Myb like, SWIRM and MPN domains 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5779494|PMID:25340873) MGI
Ensembl
PMID:25340873 GO_REF:0000107 MGI:5779494 NCBI chrNW_004936522:3,105,018...3,143,215
Ensembl chrNW_004936522:3,104,996...3,144,087
JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1350817|PMID:10594763), (MGI:1859711|PMID:10844550)
(MGI:1351242|PMID:10620616)
MGI
Ensembl
PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000107 MGI:1350817 MGI:1351242 MGI:1859711 NCBI chrNW_004936538:3,394,623...3,596,025
Ensembl chrNW_004936538:3,398,222...3,595,261
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375), (MGI:61184|PMID:17247639), (MGI:73117|PMID:13943454), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 GO_REF:0000107 MGI:1202196 MGI:61184 MGI:73117 MGI:77000 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943
JBrowse link
G Rack1 receptor for activated C kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5648195|PMID:23212600) MGI
Ensembl
PMID:23212600 GO_REF:0000107 MGI:5648195 NCBI chrNW_004936826:748,256...753,460
Ensembl chrNW_004936826:747,291...753,442
JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO (MGI:3574257|PMID:15703196) MGI PMID:15703196 MGI:3574257 NCBI chrNW_004936470:7,755,253...7,761,705 JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:3,813,916...3,817,642
Ensembl chrNW_004936590:3,813,888...3,817,642
JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chrNW_004936515:11,026,156...11,046,812
Ensembl chrNW_004936515:11,025,724...11,046,849
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3852572|PMID:19624305) MGI
Ensembl
PMID:19624305 GO_REF:0000107 MGI:3852572 NCBI chrNW_004936474:24,788,175...24,837,471
Ensembl chrNW_004936474:24,788,195...24,837,395
JBrowse link
G Tyr tyrosinase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1202196|PMID:9548375), (MGI:60423|PMID:13880466)
(MGI:61184|PMID:17247639)
RGD
Ensembl
MGI
PMID:9548375 PMID:13880466 PMID:15760344 PMID:17247639 GO_REF:0000107 MGI:1202196 MGI:60423 MGI:61184 RGD:1599687 NCBI chrNW_004936736:421,623...519,085
Ensembl chrNW_004936736:421,598...519,253
JBrowse link
G Tyrp1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639)
(MGI:77000|PMID:2379821)
MGI
Ensembl
PMID:2379821 PMID:13880466 PMID:17247639 GO_REF:0000107 MGI:60423 MGI:61184 MGI:77000 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513
JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5779494|PMID:25340873) MGI
Ensembl
PMID:25340873 GO_REF:0000107 MGI:5779494 NCBI chrNW_004936627:942,570...992,081
Ensembl chrNW_004936627:942,483...992,071
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53893|PMID:4777306) MGI
Ensembl
PMID:4777306 GO_REF:0000107 MGI:53893 NCBI chrNW_004936558:2,227,305...2,257,725
Ensembl chrNW_004936558:2,227,253...2,257,722
JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:7,060,747...7,065,276
Ensembl chrNW_004936493:7,061,587...7,065,109
JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185), (MGI:2156164|PMID:8170972) MGI
Ensembl
PMID:8170972 PMID:11709185 GO_REF:0000107 MGI:2154874 MGI:2156164 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185) MGI
Ensembl
PMID:11709185 GO_REF:0000107 MGI:2154874 NCBI chrNW_004936783:15,493...50,959
Ensembl chrNW_004936783:18,194...50,983
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3045416|PMID:15102850), (MGI:54946|PMID:7203014) MGI
Ensembl
PMID:7203014 PMID:15102850 GO_REF:0000107 MGI:3045416 MGI:54946 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2177902|PMID:11912185) MGI
Ensembl
PMID:11912185 GO_REF:0000107 MGI:2177902 NCBI chrNW_004936534:4,550,592...4,584,482
Ensembl chrNW_004936534:4,550,592...4,584,482
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3041903|PMID:15060160) MGI
Ensembl
PMID:15060160 GO_REF:0000107 MGI:3041903 NCBI chrNW_004936472:15,074,947...15,110,427
Ensembl chrNW_004936472:15,074,633...15,110,534
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055244|PMID:15322542) MGI
Ensembl
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
G Gna11 G protein subunit alpha 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055244|PMID:15322542) MGI
Ensembl
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chrNW_004936588:1,770,777...1,789,143
Ensembl chrNW_004936588:1,770,771...1,789,170
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055244|PMID:15322542)
(MGI:3778519|PMID:18454205)
MGI
Ensembl
PMID:15322542 PMID:18454205 GO_REF:0000107 MGI:3055244 MGI:3778519 NCBI chrNW_004936482:17,162,854...17,238,319
Ensembl chrNW_004936482:17,162,950...17,238,274
JBrowse link
G LOC101971998 guanine nucleotide-binding protein G(q) subunit alpha acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chrNW_004936503:13,098,517...13,276,106
Ensembl chrNW_004936503:13,099,558...13,276,152
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3513741|PMID:15550542) MGI
Ensembl
PMID:15550542 GO_REF:0000107 MGI:3513741 NCBI chrNW_004936586:1,203,520...1,261,341
Ensembl chrNW_004936586:1,203,367...1,261,421
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (MGI:3513741|PMID:15550542) MGI PMID:15550542 MGI:3513741 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2157189|PMID:11756244) MGI
Ensembl
PMID:11756244 GO_REF:0000107 MGI:2157189 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chrNW_004936569:4,215,513...4,307,815
Ensembl chrNW_004936569:4,216,900...4,307,815
JBrowse link
G Slc45a2 solute carrier family 45 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2156131|PMID:11700328) Ensembl
MGI
PMID:11700328 GO_REF:0000107 MGI:2156131 NCBI chrNW_004936518:7,094,949...7,139,961
Ensembl chrNW_004936518:7,095,038...7,137,277
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chrNW_004936469:32,240,730...32,372,413
Ensembl chrNW_004936469:32,240,835...32,371,267
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:1861752|PMID:10932191) MGI PMID:10932191 MGI:1861752 NCBI chrNW_004936472:10,599,717...10,605,187
Ensembl chrNW_004936472:10,602,102...10,605,191
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:3,044,565...3,097,692
Ensembl chrNW_004936570:3,044,565...3,098,097
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,983,248...22,063,133
Ensembl chrNW_004936475:21,983,248...22,063,181
JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:4,322,032...4,347,392
Ensembl chrNW_004936596:4,318,452...4,347,392
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,223,646...1,262,577
Ensembl chrNW_004936588:1,222,466...1,262,676
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:4,550,592...4,584,482
Ensembl chrNW_004936534:4,550,592...4,584,482
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353
JBrowse link
G Cd63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:196,002...199,177
Ensembl chrNW_004936646:191,128...199,777
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chrNW_004936489:35,620...51,809 JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936736:1,304,290...1,360,412
Ensembl chrNW_004936736:1,304,185...1,361,221
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3505659|PMID:15205258) MGI
Ensembl
PMID:15205258 GO_REF:0000107 MGI:3505659 NCBI chrNW_004936489:11,178,338...11,191,601
Ensembl chrNW_004936489:11,178,015...11,191,781
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:748,851...765,636
Ensembl chrNW_004936525:748,600...765,642
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,206,226...7,232,798
Ensembl chrNW_004936502:7,206,172...7,233,912
JBrowse link
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chrNW_004936636:1,407,666...1,430,683
Ensembl chrNW_004936636:1,410,589...1,430,124
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5429122|PMID:22627278) MGI
Ensembl
PMID:22627278 GO_REF:0000107 MGI:5429122 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chrNW_004936512:1,942,902...2,088,122
Ensembl chrNW_004936512:1,943,196...2,088,122
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chrNW_004936637:1,787,987...1,946,250
Ensembl chrNW_004936637:1,788,276...1,942,833
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185)
(MGI:3618415|PMID:16427619)
(MGI:2180980|PMID:12086670)
(MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
MGI
Ensembl
PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 GO_REF:0000107 MGI:2154874 MGI:2180980 MGI:3618415 MGI:81816 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353
JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:1,387,354...1,392,955
Ensembl chrNW_004936762:1,387,346...1,391,967
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:85072|PMID:9012511) MGI
Ensembl
PMID:9012511 GO_REF:0000107 MGI:85072 NCBI chrNW_004936530:1,744,216...1,766,602
Ensembl chrNW_004936530:1,744,199...1,765,027
JBrowse link
G Ednrb endothelin receptor type B involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:77000|PMID:2379821)
(MGI:85072|PMID:9012511)
RGD
Ensembl
MGI
PMID:2379821 PMID:9012511 PMID:11709437 GO_REF:0000107 MGI:77000 MGI:85072 RGD:628459 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:28964717) UniProt PMID:28964717 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3796727|PMID:18397875) MGI
Ensembl
PMID:18397875 GO_REF:0000107 MGI:3796727 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:2175993|PMID:11836498) MGI PMID:11836498 MGI:2175993 NCBI chrNW_004936636:1,407,666...1,430,683
Ensembl chrNW_004936636:1,410,589...1,430,124
JBrowse link
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2175993|PMID:11836498) MGI
Ensembl
PMID:11836498 GO_REF:0000107 MGI:2175993 NCBI chrNW_004936657:1,075,300...1,104,328
Ensembl chrNW_004936657:1,075,261...1,103,055
JBrowse link
G Hps6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936600:3,754,324...3,757,048
Ensembl chrNW_004936600:3,754,460...3,756,880
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,162,854...17,238,319
Ensembl chrNW_004936482:17,162,950...17,238,274
JBrowse link
G LOC101955772 olfactory receptor 51E2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:398,888...416,085
Ensembl chrNW_004936498:398,888...416,085
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) UniProt PMID:23395477 NCBI chrNW_004936521:2,959,770...3,637,431
Ensembl chrNW_004936521:2,959,844...3,946,191
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (MGI:5049797|PMID:21610032) UniProt PMID:21610032 MGI:5049797 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661
JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821)
(MGI:2180980|PMID:12086670)
MGI
Ensembl
PMID:2379821 PMID:12086670 GO_REF:0000107 MGI:2180980 MGI:77000 NCBI chrNW_004936603:1,682,411...1,858,295
Ensembl chrNW_004936603:1,682,513...1,858,173
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chrNW_004936525:776,102...821,067
Ensembl chrNW_004936525:775,955...821,085
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:7828830 GO_REF:0000107 MGI:68866 MGI:77000 NCBI chrNW_004936586:1,203,520...1,261,341
Ensembl chrNW_004936586:1,203,367...1,261,421
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chrNW_004936471:38,612,450...38,952,150
Ensembl chrNW_004936471:38,612,427...38,952,199
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:52947 MGI:77000 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3701016|PMID:16790476) MGI
Ensembl
PMID:16790476 GO_REF:0000107 MGI:3701016 NCBI chrNW_004936492:3,173,770...3,183,423
Ensembl chrNW_004936492:3,173,741...3,185,024
JBrowse link
G Tyrp1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 (Langereis blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,628,649...1,635,599
Ensembl chrNW_004936569:1,625,374...1,635,694
JBrowse link
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936543:1,052,692...1,058,070
Ensembl chrNW_004936543:1,052,732...1,058,483
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936470:5,260,984...5,301,552
Ensembl chrNW_004936470:5,257,542...5,289,469
JBrowse link
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:1,407,666...1,430,683
Ensembl chrNW_004936636:1,410,589...1,430,124
JBrowse link
G Hps4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:1,075,300...1,104,328
Ensembl chrNW_004936657:1,075,261...1,103,055
JBrowse link
G LOC101955400 AP-1 complex subunit sigma-3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936569:5,574,591...5,604,948
Ensembl chrNW_004936569:5,490,319...5,544,250
Ensembl chrNW_004936569:5,490,319...5,544,250
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774)
(PMID:23084991)
ParkinsonsUK-UCL
UniProt
PMID:22511774 PMID:23084991 NCBI chrNW_004936489:35,620...51,809 JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936736:1,304,290...1,360,412
Ensembl chrNW_004936736:1,304,185...1,361,221
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936644:196,344...236,659
Ensembl chrNW_004936644:196,263...235,305
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO (MGI:2177987|PMID:11887186), (MGI:3614727|PMID:11886590)
(MGI:3028456|PMID:14730011)
MGI PMID:11886590 PMID:11887186 PMID:14730011 MGI:2177987 MGI:3028456 MGI:3614727 NCBI chrNW_004936525:776,102...821,067
Ensembl chrNW_004936525:775,955...821,085
JBrowse link
G Mreg melanoregulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:1,203,520...1,261,341
Ensembl chrNW_004936586:1,203,367...1,261,421
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (MGI:3028456|PMID:14730011)
(MGI:1930900|PMID:11266470), (MGI:85369|PMID:8962090)
MGI PMID:8962090 PMID:11266470 PMID:14730011 MGI:1930900 MGI:3028456 MGI:85369 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:2,227,305...2,257,725
Ensembl chrNW_004936558:2,227,253...2,257,722
JBrowse link
G Vps33b VPS33B late endosome and lysosome associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,007,448...16,031,353
Ensembl chrNW_004936483:16,007,465...16,032,392
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:4,322,032...4,347,392
Ensembl chrNW_004936596:4,318,452...4,347,392
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330543|PMID:9931340) MGI
Ensembl
PMID:9931340 GO_REF:0000107 MGI:1330543 NCBI chrNW_004936549:5,964,240...6,205,245
Ensembl chrNW_004936549:5,965,143...6,204,379
JBrowse link
G Apoe apolipoprotein E involved_in ISO (PMID:26387950)
(MGI:6830356|PMID:26387950)
UniProt PMID:26387950 MGI:6830356 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375) MGI
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458
JBrowse link
G Bace2 beta-secretase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:2,362,994...2,449,783
Ensembl chrNW_004936500:2,368,334...2,449,789
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3522060|PMID:15265785) MGI
Ensembl
PMID:15265785 GO_REF:0000107 MGI:3522060 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1354542|PMID:11110696) MGI
Ensembl
PMID:11110696 GO_REF:0000107 MGI:1354542 NCBI chrNW_004936477:18,618,330...18,619,512
Ensembl chrNW_004936477:18,618,499...18,619,140
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936644:196,344...236,659
Ensembl chrNW_004936644:196,263...235,305
JBrowse link
G Kif13a kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:3,612,104...3,723,275
Ensembl chrNW_004936552:3,613,657...3,722,973
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:3618562|PMID:16518687)
(MGI:53824|PMID:4634048)
MGI PMID:4634048 PMID:16518687 MGI:3618562 MGI:53824 NCBI chrNW_004936484:16,750,976...16,915,999
Ensembl chrNW_004936484:16,763,511...16,916,022
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936950:242,071...323,204
Ensembl chrNW_004936950:242,522...320,078
JBrowse link
G Pmel premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:368,064...379,085
Ensembl chrNW_004936646:365,809...379,130
JBrowse link
G Shroom2 shroom family member 2 involved_in ISO (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chrNW_004936644:42,620...127,481
Ensembl chrNW_004936644:42,581...127,531
JBrowse link
G Tyrp1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375) MGI
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375) MGI
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:4,550,592...4,584,482
Ensembl chrNW_004936534:4,550,592...4,584,482
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353
JBrowse link
G Dctn1 dynactin subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
Ensembl
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chrNW_004936556:601,550...632,321
Ensembl chrNW_004936556:601,548...621,609
JBrowse link
G Dctn2 dynactin subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
Ensembl
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chrNW_004936646:1,678,678...1,695,142
Ensembl chrNW_004936646:1,678,678...1,695,142
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936644:196,344...236,659
Ensembl chrNW_004936644:196,263...235,305
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chrNW_004936471:26,589,251...26,628,302
Ensembl chrNW_004936471:26,589,161...26,628,302
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
Ensembl
InterPro
PMID:22275436 GO_REF:0000002 GO_REF:0000107 MGI:5492030 NCBI chrNW_004936586:1,203,520...1,261,341
Ensembl chrNW_004936586:1,203,367...1,261,421
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO (MGI:1202196|PMID:9548375)
(MGI:3653524|PMID:11266473)
(MGI:5569175|PMID:24721909)
(MGI:87417|PMID:9133672)
MGI PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 MGI:1202196 MGI:3653524 MGI:5569175 MGI:87417 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Rab11a RAB11A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:26,089,216...26,111,245
Ensembl chrNW_004936471:26,088,852...26,113,433
JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:5,198,659...5,210,430
Ensembl chrNW_004936588:5,198,394...5,214,603
JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:748,851...765,636
Ensembl chrNW_004936525:748,600...765,642
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (MGI:5526918|PMID:22854043) UniProt PMID:22854043 MGI:5526918 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3653524|PMID:11266473) MGI
Ensembl
PMID:11266473 GO_REF:0000107 MGI:3653524 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943
JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpcn2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:1,301,937...1,343,046
Ensembl chrNW_004936599:1,318,169...1,343,106
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3807630|PMID:17464332) MGI
Ensembl
PMID:17464332 GO_REF:0000107 MGI:3807630 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl4 ADAMTS like 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5698751|PMID:26405179) MGI
Ensembl
PMID:26405179 GO_REF:0000107 MGI:5698751 NCBI chrNW_004936580:782,146...791,388
Ensembl chrNW_004936580:782,112...791,605
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:196,002...199,177
Ensembl chrNW_004936646:191,128...199,777
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405), (MGI:3629265|PMID:14609561)
(MGI:3047015|PMID:14978221)
MGI
Ensembl
PMID:14609561 PMID:14978221 PMID:15572405 GO_REF:0000107 MGI:3047015 MGI:3512820 MGI:3629265 NCBI chrNW_004936498:5,758,572...5,824,526
Ensembl chrNW_004936498:5,751,779...5,824,378
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405) MGI
Ensembl
PMID:14978221 PMID:15572405 GO_REF:0000107 MGI:3047015 MGI:3512820 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:196,002...199,177
Ensembl chrNW_004936646:191,128...199,777
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:81816|PMID:8758925) MGI
Ensembl
PMID:8758925 GO_REF:0000107 MGI:81816 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:54133|PMID:1278263) MGI PMID:1278263 MGI:54133 NCBI chrNW_004936484:16,750,976...16,915,999
Ensembl chrNW_004936484:16,763,511...16,916,022
JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405)
(MGI:1267003|PMID:9620764)
MGI
Ensembl
PMID:9620764 PMID:15572405 GO_REF:0000107 MGI:1267003 MGI:3512820 NCBI chrNW_004936498:5,758,572...5,824,526
Ensembl chrNW_004936498:5,751,779...5,824,378
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405) MGI
Ensembl
PMID:15572405 GO_REF:0000107 MGI:3512820 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125
JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_negative_effect
involved_in
ISO
IEA
(MGI:6814712|PMID:26971330) UniProt
Ensembl
PMID:26971330 GO_REF:0000107 MGI:6814712 NCBI chrNW_004936490:2,769,264...2,778,342
Ensembl chrNW_004936490:2,769,231...2,805,238
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894988|PMID:9241272) MGI
Ensembl
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chrNW_004936664:2,968,103...2,973,652
Ensembl chrNW_004936664:2,967,865...2,973,820
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894988|PMID:9241272) MGI
Ensembl
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chrNW_004936512:1,942,902...2,088,122
Ensembl chrNW_004936512:1,943,196...2,088,122
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chrNW_004936637:1,787,987...1,946,250
Ensembl chrNW_004936637:1,788,276...1,942,833
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618415|PMID:16427619) MGI
Ensembl
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618415|PMID:16427619) MGI
Ensembl
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chrNW_004936507:5,566,144...5,650,412
Ensembl chrNW_004936507:5,565,821...5,650,828
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chrNW_004936469:32,240,730...32,372,413
Ensembl chrNW_004936469:32,240,835...32,371,267
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,908,031...18,954,402
Ensembl chrNW_004936475:18,906,493...18,955,072
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:4,550,592...4,584,482
Ensembl chrNW_004936534:4,550,592...4,584,482
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205)
(MGI:60945|PMID:14138974)
MGI
Ensembl
PMID:14138974 PMID:18454205 GO_REF:0000107 MGI:3778519 MGI:60945 NCBI chrNW_004936512:1,942,902...2,088,122
Ensembl chrNW_004936512:1,943,196...2,088,122
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chrNW_004936637:1,787,987...1,946,250
Ensembl chrNW_004936637:1,788,276...1,942,833
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3767491|PMID:15818405) MGI
Ensembl
PMID:15818405 GO_REF:0000107 MGI:3767491 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3767491|PMID:15818405) MGI
Ensembl
PMID:15818405 GO_REF:0000107 MGI:3767491 NCBI chrNW_004936783:15,493...50,959
Ensembl chrNW_004936783:18,194...50,983
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:60945|PMID:14138974) MGI
Ensembl
PMID:14138974 GO_REF:0000107 MGI:60945 NCBI chrNW_004936530:1,744,216...1,766,602
Ensembl chrNW_004936530:1,744,199...1,765,027
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2450053|PMID:12538872) MGI
Ensembl
PMID:12538872 GO_REF:0000107 MGI:2450053 NCBI chrNW_004936558:2,227,305...2,257,725
Ensembl chrNW_004936558:2,227,253...2,257,722
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5442641|PMID:22664872) MGI
Ensembl
PMID:22664872 GO_REF:0000107 MGI:5442641 NCBI chrNW_004936677:1,058,601...1,093,233
Ensembl chrNW_004936677:1,058,595...1,093,147
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055244|PMID:15322542) MGI
Ensembl
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chrNW_004936588:1,770,777...1,789,143
Ensembl chrNW_004936588:1,770,771...1,789,170
JBrowse link
G LOC101971998 guanine nucleotide-binding protein G(q) subunit alpha acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chrNW_004936503:13,098,517...13,276,106
Ensembl chrNW_004936503:13,099,558...13,276,152
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936644:196,344...236,659
Ensembl chrNW_004936644:196,263...235,305
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chrNW_004936469:32,240,730...32,372,413
Ensembl chrNW_004936469:32,240,835...32,371,267
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936644:196,344...236,659
Ensembl chrNW_004936644:196,263...235,305
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chrNW_004936657:425,902...522,331
Ensembl chrNW_004936657:426,787...521,198
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15025
    pigmentation 102
      cellular pigmentation + 46
      developmental pigmentation + 52
      ocellus pigmentation + 0
      pigment accumulation + 10
      pigment metabolic process involved in pigmentation + 3
      regulation of pigmentation + 14
paths to the root