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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms



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pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330543|PMID:9931340) MGI
Ensembl
PMID:9931340 GO_REF:0000107 MGI:1330543 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258
JBrowse link
G ARCN1 archain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4454933|PMID:20502676) Ensembl
Ensembl
MGI
PMID:20502676 GO_REF:0000107 MGI:4454933 NCBI chr 5:15,141,861...15,171,642
Ensembl chr 5:15,143,499...15,171,586
JBrowse link
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:61184|PMID:17247639) MGI PMID:17247639 MGI:61184 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:53940|PMID:4858102)
(MGI:71790|PMID:2473662)
(MGI:50550|PMID:1752214), (MGI:53908|PMID:4670054)
(MGI:3616522|PMID:16338116)
(MGI:53773|PMID:4561716)
MGI PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 More... MGI:3616522 MGI:50550 MGI:53773 MGI:53908 MGI:53940 MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:71790 MGI:72704 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869
JBrowse link
G ATRN attractin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3771742|PMID:18064672) Ensembl
Ensembl
MGI
PMID:18064672 GO_REF:0000107 MGI:3771742 MGI:48643 NCBI chr24:17,698,238...17,859,810
Ensembl chr24:17,702,282...17,859,737
JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3522060|PMID:15265785), (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223) MGI
Ensembl
PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 GO_REF:0000107 MGI:3522060 MGI:55273 MGI:56449 MGI:77039 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:56,327,104...56,332,608
Ensembl chr  X:56,327,182...56,332,047
JBrowse link
G DCT dopachrome tautomerase acts_upstream_of_or_within ISO (MGI:50485|PMID:1537334) MGI PMID:1537334 MGI:50485 NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346
JBrowse link
G DOCK7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821) MGI PMID:2379821 MGI:77000 NCBI chr 5:47,435,209...47,653,312
Ensembl chr 5:47,462,224...47,653,163
JBrowse link
G DRD2 dopamine receptor D2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3576468|PMID:9140068) MGI
Ensembl
Ensembl
PMID:9140068 GO_REF:0000107 MGI:3576468 NCBI chr 5:19,732,842...19,795,241
Ensembl chr 5:19,732,836...19,795,241
JBrowse link
G EDA ectodysplasin A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:53773|PMID:4561716) Ensembl
Ensembl
MGI
PMID:4561716 GO_REF:0000107 MGI:53773 MGI:65389 NCBI chr  X:54,078,694...54,515,535
Ensembl chr  X:54,078,966...54,515,535
JBrowse link
G EDAR ectodysplasin A receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:54784|PMID:544312) MGI
Ensembl
PMID:544312 GO_REF:0000107 MGI:54784 NCBI chr10:34,873,311...34,943,140
Ensembl chr10:34,848,526...34,940,784
JBrowse link
G EDNRB endothelin receptor type B acts_upstream_of_or_within ISO homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
(MGI:77000|PMID:2379821)
RGD
MGI
PMID:2379821 PMID:8570650 MGI:77000 RGD:628515 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463) MGI PMID:9362463 MGI:1194987 NCBI chr19:31,124,325...31,129,538 JBrowse link
G FIG4 FIG4 phosphoinositide 5-phosphatase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3715385|PMID:17572665), (MGI:5296993|PMID:22028665) Ensembl
MGI
PMID:17572665 PMID:22028665 GO_REF:0000107 MGI:3715385 MGI:5296993 NCBI chr12:66,508,801...66,632,830
Ensembl chr12:66,509,431...66,632,822
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr28:11,547,457...11,572,248
Ensembl chr28:11,547,741...11,571,613
JBrowse link
G HPS3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:77000|PMID:2379821) Ensembl
Ensembl
MGI
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr23:43,939,829...43,979,446
Ensembl chr23:43,939,824...43,988,555
JBrowse link
G HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:77000|PMID:2379821) Ensembl
Ensembl
MGI
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr21:40,725,089...40,770,665
Ensembl chr21:40,726,274...40,770,112
JBrowse link
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821)
(MGI:3522060|PMID:15265785), (MGI:61184|PMID:17247639)
MGI PMID:2379821 PMID:15265785 PMID:17247639 MGI:3522060 MGI:61184 MGI:77000 NCBI chr28:14,614,434...14,617,138
Ensembl chr28:14,614,584...14,653,629
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:1351242|PMID:10620616) UniProt
UniProt
Ensembl
MGI
PMID:10620616 GO_REF:0000024 GO_REF:0000107 MGI:1351242 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029
JBrowse link
G KRT76 keratin 76 acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chr27:2,337,929...2,346,716 JBrowse link
G LYST lysosomal trafficking regulator involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:73117|PMID:13943454)
(MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223)
RGD
Ensembl
MGI
PMID:2513223 PMID:4031470 PMID:7089489 PMID:12638234 PMID:13943454 GO_REF:0000107 MGI:55273 MGI:56449 MGI:73117 MGI:77039 RGD:1302441 NCBI chr 4:4,106,869...4,296,042
Ensembl chr 4:4,089,837...4,294,593
JBrowse link
G MC1R melanocortin 1 receptor acts_upstream_of_or_within ISO MGI MGI:87265 NCBI chr 5:63,694,296...63,695,249 JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI MGI:60250 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G MITF melanocyte inducing transcription factor acts_upstream_of_or_within ISO (MGI:2180980|PMID:12086670)
(MGI:77000|PMID:2379821)
MGI PMID:2379821 PMID:12086670 MGI:2180980 MGI:77000 NCBI chr20:21,772,147...21,873,545
Ensembl chr20:21,612,927...21,870,578
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:17247639 MGI:61184 MGI:77000 NCBI chr25:48,121,499...48,167,535
Ensembl chr25:48,121,499...48,170,710
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within ISO (MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:3141922 PMID:7828830 MGI:68399 MGI:68866 MGI:77000 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3712581|PMID:17523175) MGI PMID:17523175 MGI:3712581 NCBI chr13:25,200,772...25,205,309
Ensembl chr13:25,200,577...25,205,309
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873)
(MGI:1203760|PMID:9560409)
(MGI:73808|PMID:3422417)
PMID:10920234
(MGI:56220|PMID:6098826), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:68866|PMID:7828830), (MGI:73393|PMID:7774591), (MGI:77000|PMID:2379821)
(MGI:68399|PMID:3141922)
(MGI:1203759|PMID:9560408), (MGI:5569175|PMID:24721909)
(MGI:55563|PMID:6305507)
MGI PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 More... MGI:1203759 MGI:1203760 MGI:55563 MGI:5569175 MGI:56220 MGI:5779494 MGI:60423 MGI:61184 MGI:61192 MGI:68399 MGI:68866 MGI:73393 MGI:73808 MGI:77000 RGD:61493 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chr 5:51,037,222...51,079,229
Ensembl chr 5:51,036,874...51,075,259
JBrowse link
G NF1 neurofibromin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1351242|PMID:10620616)
(MGI:1350817|PMID:10594763), (MGI:1859711|PMID:10844550)
MGI
Ensembl
PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000107 MGI:1350817 MGI:1351242 MGI:1859711 NCBI chr 9:41,467,460...41,679,388
Ensembl chr 9:41,469,416...41,679,382
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375), (MGI:61184|PMID:17247639), (MGI:73117|PMID:13943454), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 GO_REF:0000107 MGI:1202196 MGI:61184 MGI:73117 MGI:77000 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
G RACK1 receptor for activated C kinase 1 acts_upstream_of_or_within ISO (MGI:5648195|PMID:23212600) MGI PMID:23212600 MGI:5648195 NCBI chr11:426,734...431,087
Ensembl chr11:426,215...431,089
JBrowse link
G RECQL4 RecQ like helicase 4 acts_upstream_of_or_within ISO (MGI:3574257|PMID:15703196) MGI PMID:15703196 MGI:3574257 NCBI chr13:37,930,906...37,936,653
Ensembl chr13:37,930,621...37,936,753
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653
JBrowse link
G SPARC secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chr 4:57,659,541...57,682,147
Ensembl chr 4:57,659,650...57,681,711
JBrowse link
G SZT2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3852572|PMID:19624305) MGI
Ensembl
PMID:19624305 GO_REF:0000107 MGI:3852572 NCBI chr15:16,729,068...16,780,549
Ensembl chr15:16,728,758...16,780,325
JBrowse link
G TYR tyrosinase involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:21873635)
(MGI:1202196|PMID:9548375), (MGI:60423|PMID:13880466)
(MGI:61184|PMID:17247639)
RGD
GO_Central
MGI
PMID:9548375 PMID:13880466 PMID:15760344 PMID:17247639 PMID:21873635 MGI:1202196 MGI:60423 MGI:61184 RGD:1599687 NCBI chr21:10,799,940...10,894,187
Ensembl chr21:10,799,940...10,894,191
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821)
(MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639)
MGI PMID:2379821 PMID:13880466 PMID:17247639 MGI:60423 MGI:61184 MGI:77000 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
JBrowse link
G VANGL1 VANGL planar cell polarity protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5779494|PMID:25340873) Ensembl
Ensembl
MGI
PMID:25340873 GO_REF:0000107 MGI:5779494 NCBI chr17:53,174,080...53,227,616
Ensembl chr17:53,174,127...53,220,765
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53893|PMID:4777306) MGI
Ensembl
Ensembl
PMID:4777306 GO_REF:0000107 MGI:53893 NCBI chr26:7,090,669...7,119,913 JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POMC proopiomelanocortin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:19,431,396...19,438,247
Ensembl chr17:19,431,585...19,434,440
JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185), (MGI:2156164|PMID:8170972) MGI
Ensembl
PMID:8170972 PMID:11709185 GO_REF:0000107 MGI:2154874 MGI:2156164 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (MGI:2154874|PMID:11709185) MGI PMID:11709185 MGI:2154874 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3045416|PMID:15102850), (MGI:54946|PMID:7203014) MGI
Ensembl
PMID:7203014 PMID:15102850 GO_REF:0000107 MGI:3045416 MGI:54946 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2177902|PMID:11912185) MGI
Ensembl
PMID:11912185 GO_REF:0000107 MGI:2177902 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G DCT dopachrome tautomerase acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3041903|PMID:15060160)
(PMID:21873635)
MGI
GO_Central
PMID:15060160 PMID:21873635 MGI:3041903 NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346
JBrowse link
G EDNRA endothelin receptor type A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:45,823,472...45,878,527
Ensembl chr15:45,823,560...45,876,463
JBrowse link
G EDNRB endothelin receptor type B acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3055244|PMID:15322542)
(PMID:21873635)
MGI
GO_Central
PMID:15322542 PMID:21873635 MGI:3055244 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587
JBrowse link
G GNA11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3055244|PMID:15322542) Ensembl
MGI
PMID:15322542 GO_REF:0000107 MGI:3055244
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055244|PMID:15322542)
(MGI:3778519|PMID:18454205)
MGI
Ensembl
PMID:15322542 PMID:18454205 GO_REF:0000107 MGI:3055244 MGI:3778519 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within ISO (MGI:3513741|PMID:15550542) MGI PMID:15550542 MGI:3513741 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:3513741|PMID:15550542) MGI PMID:15550542 MGI:3513741 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2157189|PMID:11756244) MGI
Ensembl
PMID:11756244 GO_REF:0000107 MGI:2157189 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr37:28,346,476...28,443,648
Ensembl chr37:28,346,563...28,444,561
JBrowse link
G SLC45A2 solute carrier family 45 member 2 acts_upstream_of_or_within
involved_in
ISO (MGI:2156131|PMID:11700328)
(MGI:7338895|PMID:35469906)
MGI
UniProt
PMID:11700328 PMID:35469906 MGI:2156131 MGI:7338895 NCBI chr 4:73,838,684...73,868,222
Ensembl chr 4:73,815,291...73,867,437
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122
JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:1861752|PMID:10932191) MGI PMID:10932191 MGI:1861752 NCBI chr22:49,948,743...49,952,007
Ensembl chr22:49,948,778...49,950,055
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD27 ankyrin repeat domain 27 involved_in ISO (MGI:5607516|PMID:21187829) UniProt PMID:21187829 MGI:5607516 NCBI chr 1:119,325,132...119,377,266
Ensembl chr 1:119,325,873...119,376,948
JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chr 5:77,512,865...77,589,136
Ensembl chr 5:77,432,517...77,565,801
JBrowse link
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) UniProt PMID:19841138 NCBI chr20:46,261,799...46,290,387
Ensembl chr20:46,261,803...46,290,342
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:37,706,809...37,719,044
Ensembl chr 1:37,712,142...37,718,266
JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOD2 superoxide dismutase 2 acts_upstream_of_or_within ISO (MGI:3505659|PMID:15205258) MGI PMID:15205258 MGI:3505659 NCBI chr 1:48,943,472...48,955,158
Ensembl chr 1:48,836,262...48,955,706
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) UniProt PMID:21291502 MGI:5487521 NCBI chr25:48,181,557...48,220,729
Ensembl chr25:48,188,085...48,203,149
JBrowse link
G SHROOM2 shroom family member 2 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr  X:6,499,570...6,642,738
Ensembl chr  X:6,499,354...6,641,946
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:35,050,588...35,073,633
Ensembl chr  X:35,050,606...35,073,067
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr28:11,547,457...11,572,248
Ensembl chr28:11,547,741...11,571,613
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of ISO (MGI:3778519|PMID:18454205) MGI PMID:18454205 MGI:3778519 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185)
(MGI:3618415|PMID:16427619)
(MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
MGI
Ensembl
PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 GO_REF:0000107 MGI:2154874 MGI:2180980 MGI:3618415 MGI:81816 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821) MGI PMID:2379821 MGI:77000 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:56,327,104...56,332,608
Ensembl chr  X:56,327,182...56,332,047
JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within ISO (MGI:85072|PMID:9012511) MGI PMID:9012511 MGI:85072 NCBI chr24:44,024,553...44,054,727
Ensembl chr24:44,033,419...44,054,050
JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:85072|PMID:9012511)
(MGI:77000|PMID:2379821)
RGD
Ensembl
MGI
PMID:2379821 PMID:9012511 PMID:11709437 GO_REF:0000107 MGI:77000 MGI:85072 RGD:628459 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587
JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3796727|PMID:18397875) MGI PMID:18397875 MGI:3796727 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:2175993|PMID:11836498) MGI PMID:11836498 MGI:2175993 NCBI chr28:11,547,457...11,572,248
Ensembl chr28:11,547,741...11,571,613
JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO (MGI:2175993|PMID:11836498) MGI PMID:11836498 MGI:2175993 NCBI chr26:20,131,658...20,157,532
Ensembl chr26:19,933,281...20,157,058
JBrowse link
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 involved_in IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr28:14,614,434...14,617,138
Ensembl chr28:14,614,584...14,653,629
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029
JBrowse link
G LRMDA leucine rich melanocyte differentiation associated involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:25,610,656...26,636,351
Ensembl chr 4:25,610,174...26,633,127
JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852
JBrowse link
G MITF melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2180980|PMID:12086670)
(PMID:21873635)
(MGI:77000|PMID:2379821)
MGI
GO_Central
PMID:2379821 PMID:12086670 PMID:21873635 MGI:2180980 MGI:77000 NCBI chr20:21,772,147...21,873,545
Ensembl chr20:21,612,927...21,870,578
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chr25:48,121,499...48,167,535
Ensembl chr25:48,121,499...48,170,710
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821)
(PMID:21873635)
MGI
GO_Central
PMID:2379821 PMID:7828830 PMID:21873635 MGI:68866 MGI:77000 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:77000|PMID:2379821)
(PMID:21873635)
MGI
Ensembl
GO_Central
PMID:2379821 PMID:21873635 GO_REF:0000107 MGI:77000 NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
JBrowse link
G OR51E2 olfactory receptor family 51 subfamily E member 2 involved_in ISO (PMID:27226631) UniProt PMID:27226631 NCBI chr21:27,078,888...27,081,746
Ensembl chr21:27,080,476...27,081,438
JBrowse link
G RAB27A RAB27A, member RAS oncogene family involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:77000|PMID:2379821) Ensembl
Ensembl
MGI
PMID:2379821 GO_REF:0000107 MGI:52947 MGI:77000 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
G SLC24A5 solute carrier family 24 member 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:14,372,019...14,400,262
Ensembl chr30:14,371,778...14,400,152
JBrowse link
G SOX10 SRY-box transcription factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701016|PMID:16790476) Ensembl
MGI
PMID:16790476 GO_REF:0000107 MGI:3701016 NCBI chr10:26,680,441...26,690,530
Ensembl chr10:26,681,122...26,689,882
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821) MGI PMID:2379821 MGI:77000 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:25,760,478...25,767,753
Ensembl chr37:25,760,477...25,769,841
JBrowse link
G AP1S1 adaptor related protein complex 1 subunit sigma 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 6:8,705,294...8,711,285
Ensembl chr 6:8,705,647...8,711,190
JBrowse link
G AP1S2 adaptor related protein complex 1 subunit sigma 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr  X:12,075,797...12,105,911
Ensembl chr  X:12,076,724...12,103,654
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:11,547,457...11,572,248
Ensembl chr28:11,547,741...11,571,613
JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:20,131,658...20,157,532
Ensembl chr26:19,933,281...20,157,058
JBrowse link
G LOC119868747 AP-1 complex subunit sigma-2-like involved_in IEA UniProt GO_REF:0000117
G RAB32 RAB32, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:37,706,809...37,719,044
Ensembl chr 1:37,712,142...37,718,266
JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in ISO (PMID:23084991)
(PMID:22511774)
UniProt
ParkinsonsUK-UCL
PMID:22511774 PMID:23084991 NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815
JBrowse link
G TRAPPC6A trafficking protein particle complex subunit 6A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:110,328,448...110,339,394
Ensembl chr 1:110,328,499...110,339,087
JBrowse link
G WDFY1 WD repeat and FYVE domain containing 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr37:29,544,956...29,658,544
Ensembl chr37:29,444,082...29,677,312
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) UniProt PMID:19717472 NCBI chr  X:6,438,068...6,479,731
Ensembl chr  X:6,437,660...6,474,447
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (MGI:2177987|PMID:11887186), (MGI:3614727|PMID:11886590)
(MGI:3028456|PMID:14730011)
MGI PMID:11886590 PMID:11887186 PMID:14730011 MGI:2177987 MGI:3028456 MGI:3614727 NCBI chr25:48,121,499...48,167,535
Ensembl chr25:48,121,499...48,170,710
JBrowse link
G MREG melanoregulin involved_in ISO (MGI:5447858|PMID:22940130) UniProt PMID:22940130 MGI:5447858 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:1930900|PMID:11266470), (MGI:85369|PMID:8962090)
(MGI:3028456|PMID:14730011)
MGI PMID:8962090 PMID:11266470 PMID:14730011 MGI:1930900 MGI:3028456 MGI:85369 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G RAB27A RAB27A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:7,090,669...7,119,913 JBrowse link
G VPS33B VPS33B late endosome and lysosome associated involved_in ISO (PMID:15790593) UniProt PMID:15790593 NCBI chr 3:53,220,199...53,239,738
Ensembl chr 3:53,220,194...53,239,732
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) UniProt PMID:19841138 NCBI chr20:46,261,799...46,290,387
Ensembl chr20:46,261,803...46,290,342
JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330543|PMID:9931340) MGI
Ensembl
PMID:9931340 GO_REF:0000107 MGI:1330543 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258
JBrowse link
G APOE apolipoprotein E involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440
JBrowse link
G ASIP agouti signaling protein involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1202196|PMID:9548375)
GO_Central
GO_Central
MGI
PMID:9548375 PMID:21873635 MGI:1202196 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G BACE2 beta-secretase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:35,714,003...35,760,686
Ensembl chr31:35,713,149...35,760,681
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3522060|PMID:15265785) MGI
Ensembl
Ensembl
PMID:15265785 GO_REF:0000107 MGI:3522060 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1354542|PMID:11110696) MGI
Ensembl
PMID:11110696 GO_REF:0000107 MGI:1354542 NCBI chr 3:58,822,405...58,823,770
Ensembl chr 3:58,822,482...58,823,138
JBrowse link
G GPR143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) UniProt PMID:19717472 NCBI chr  X:6,438,068...6,479,731
Ensembl chr  X:6,437,660...6,474,447
JBrowse link
G KIF13A kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:16,621,581...16,748,500
Ensembl chr35:16,598,425...16,748,485
JBrowse link
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:3618562|PMID:16518687)
(MGI:53824|PMID:4634048)
MGI PMID:4634048 PMID:16518687 MGI:3618562 MGI:53824 NCBI chr 4:4,106,869...4,296,042
Ensembl chr 4:4,089,837...4,294,593
JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr37:16,537,095...16,620,427
Ensembl chr37:16,541,562...16,619,554
JBrowse link
G PMEL premelanosome protein involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
JBrowse link
G RAB29 RAB29, member RAS oncogene family involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:2,196,618...2,204,150
Ensembl chr38:2,198,040...2,203,896
JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:37,706,809...37,719,044
Ensembl chr 1:37,712,142...37,718,266
JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815
JBrowse link
G SHROOM2 shroom family member 2 involved_in ISO (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chr  X:6,499,570...6,642,738
Ensembl chr  X:6,499,354...6,641,946
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within ISO (MGI:1202196|PMID:9548375) MGI PMID:9548375 MGI:1202196 NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375) MGI
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G DCTN1 dynactin subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
Ensembl
Ensembl
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr17:48,728,096...48,759,187
Ensembl chr17:48,728,270...48,759,147
JBrowse link
G DCTN2 dynactin subunit 2 acts_upstream_of_or_within ISO (MGI:5492030|PMID:22275436) MGI PMID:22275436 MGI:5492030 NCBI chr10:1,620,702...1,634,385
Ensembl chr10:1,620,724...1,634,309
JBrowse link
G GPR143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) UniProt PMID:19717472 NCBI chr  X:6,438,068...6,479,731
Ensembl chr  X:6,437,660...6,474,447
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
(MGI:5492030|PMID:22275436)
(PMID:21873635)
MGI
InterPro
GO_Central
InterPro
PMID:21873635 PMID:22275436 GO_REF:0000002 MGI:5492030 NCBI chr37:22,958,890...22,999,955
Ensembl chr37:22,960,321...23,018,600
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:87417|PMID:9133672)
(MGI:5569175|PMID:24721909)
(MGI:3653524|PMID:11266473)
(MGI:1202196|PMID:9548375)
MGI PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 MGI:1202196 MGI:3653524 MGI:5569175 MGI:87417 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G RAB11A RAB11A, member RAS oncogene family involved_in ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
Ensembl
UniProt
GO_Central
PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr30:30,200,831...30,218,412
Ensembl chr30:30,200,831...30,218,411
JBrowse link
G RAB11B RAB11B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,955,949...52,966,279
Ensembl chr20:52,956,529...52,965,383
JBrowse link
G RAB17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) UniProt PMID:21291502 MGI:5487521 NCBI chr25:48,181,557...48,220,729
Ensembl chr25:48,188,085...48,203,149
JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:64,564,351...64,590,654
Ensembl chr10:64,564,298...64,590,705
JBrowse link
G RAB27A RAB27A, member RAS oncogene family involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3653524|PMID:11266473)
GO_Central
Ensembl
MGI
PMID:11266473 PMID:21873635 GO_REF:0000107 MGI:3653524 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
G RAB27B RAB27B, member RAS oncogene family involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:20,695,100...20,832,745
Ensembl chr 1:20,700,514...20,832,975
JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPCN2 two pore segment channel 2 involved_in ISO (PMID:27140606)
(MGI:6219928|PMID:27231233)
UniProt PMID:27140606 PMID:27231233 MGI:6219928 NCBI chr18:48,956,833...48,984,499
Ensembl chr18:48,957,249...48,984,564
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3807630|PMID:17464332) MGI
Ensembl
PMID:17464332 GO_REF:0000107 MGI:3807630 NCBI chr37:25,616,942...25,622,989 JBrowse link
pigment accumulation in tissues term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC111093530 keratin-associated protein 6-2-like acts_upstream_of_or_within ISO (MGI:3695523|PMID:17151017) MGI PMID:17151017 MGI:3695523 NCBI chr31:25,744,080...25,745,146 JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTSL4 ADAMTS like 4 acts_upstream_of_or_within ISO (MGI:5698751|PMID:26405179) MGI PMID:26405179 MGI:5698751 NCBI chr17:59,736,628...59,747,689
Ensembl chr17:59,736,534...59,746,980
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO7A myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405), (MGI:3629265|PMID:14609561)
(MGI:3047015|PMID:14978221)
MGI
Ensembl
PMID:14609561 PMID:14978221 PMID:15572405 GO_REF:0000107 MGI:3047015 MGI:3512820 MGI:3629265 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405) MGI
Ensembl
PMID:14978221 PMID:15572405 GO_REF:0000107 MGI:3047015 MGI:3512820 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:126,370...139,301
Ensembl chr10:126,449...129,742
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:81816|PMID:8758925) MGI
Ensembl
PMID:8758925 GO_REF:0000107 MGI:81816 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:54133|PMID:1278263) MGI PMID:1278263 MGI:54133 NCBI chr 4:4,106,869...4,296,042
Ensembl chr 4:4,089,837...4,294,593
JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO7A myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1267003|PMID:9620764)
(MGI:3512820|PMID:15572405)
MGI
Ensembl
Ensembl
PMID:9620764 PMID:15572405 GO_REF:0000107 MGI:1267003 MGI:3512820 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405) MGI
Ensembl
PMID:15572405 GO_REF:0000107 MGI:3512820 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IMP (PMID:31117290) UniProt
UniProt
PMID:31117290 NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
JBrowse link
G TBX2 T-box transcription factor 2 involved_in
acts_upstream_of_negative_effect
IEA
ISO
(MGI:6814712|PMID:26971330) Ensembl
Ensembl
UniProt
PMID:26971330 GO_REF:0000107 MGI:6814712 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894988|PMID:9241272) MGI
Ensembl
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894988|PMID:9241272) MGI
Ensembl
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within ISO (MGI:3778519|PMID:18454205) MGI PMID:18454205 MGI:3778519 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3778519|PMID:18454205) Ensembl
Ensembl
MGI
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618415|PMID:16427619) MGI
Ensembl
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G KITLG KIT ligand acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618415|PMID:16427619) MGI
Ensembl
Ensembl
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr15:29,591,068...29,671,985
Ensembl chr15:29,591,170...29,671,974
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDH3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:80,864,859...80,912,136
Ensembl chr 5:80,863,661...80,913,019
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within ISO (MGI:60945|PMID:14138974)
(MGI:3778519|PMID:18454205)
MGI PMID:14138974 PMID:18454205 MGI:3778519 MGI:60945 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3767491|PMID:15818405) MGI
Ensembl
PMID:15818405 GO_REF:0000107 MGI:3767491 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (MGI:3767491|PMID:15818405) MGI PMID:15818405 MGI:3767491 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within ISO (MGI:60945|PMID:14138974) MGI PMID:14138974 MGI:60945 NCBI chr24:44,024,553...44,054,727
Ensembl chr24:44,033,419...44,054,050
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2450053|PMID:12538872) MGI
Ensembl
Ensembl
PMID:12538872 GO_REF:0000107 MGI:2450053 NCBI chr26:7,090,669...7,119,913 JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPNS2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO (MGI:5442641|PMID:22664872) MGI PMID:22664872 MGI:5442641 NCBI chr 5:30,494,355...30,527,669 JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNA11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3055244|PMID:15322542) Ensembl
MGI
PMID:15322542 GO_REF:0000107 MGI:3055244
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) UniProt PMID:18697795 MGI:3813974 NCBI chr  X:6,438,068...6,479,731
Ensembl chr  X:6,437,660...6,474,447
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr19:46,419,812...46,541,888
Ensembl chr19:46,423,998...46,542,122
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) UniProt PMID:18697795 MGI:3813974 NCBI chr  X:6,438,068...6,479,731
Ensembl chr  X:6,437,660...6,474,447
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr26:19,385,059...19,512,528
Ensembl chr26:19,385,058...19,516,077
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17341
    pigmentation 110
      cellular pigmentation + 50
      developmental pigmentation + 54
      ocellus pigmentation + 0
      pigment accumulation + 11
      pigment metabolic process involved in pigmentation + 3
      regulation of pigmentation + 14
paths to the root