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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms



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pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330543|PMID:9931340) MGI
Ensembl
PMID:9931340 GO_REF:0000107 MGI:1330543 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205
JBrowse link
G ARCN1 archain 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:4454933|PMID:20502676) MGI
Ensembl
PMID:20502676 GO_REF:0000107 MGI:4454933 NCBI chr11:113,411,166...113,441,792
Ensembl chr11:117,341,427...117,371,589
JBrowse link
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:61184|PMID:17247639) MGI PMID:17247639 MGI:61184 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:50550|PMID:1752214), (MGI:53908|PMID:4670054)
(MGI:53773|PMID:4561716)
(MGI:53940|PMID:4858102)
(MGI:71790|PMID:2473662)
(MGI:3616522|PMID:16338116)
MGI PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 More... MGI:3616522 MGI:50550 MGI:53773 MGI:53908 MGI:53940 MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:71790 MGI:72704 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756
JBrowse link
G ATRN attractin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3771742|PMID:18064672) MGI
Ensembl
PMID:18064672 GO_REF:0000107 MGI:3771742 MGI:48643 NCBI chr20:3,556,445...3,733,322
Ensembl chr20:3,315,278...3,486,628
JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in
acts_upstream_of_or_within
ISO (PMID:16385460)
(MGI:3522060|PMID:15265785), (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223)
UniProt
MGI
PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 PMID:16385460 MGI:3522060 MGI:55273 MGI:56449 MGI:77039 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:7089489 GO_REF:0000107 MGI:55273 MGI:77000 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:61,537,949...61,543,545
Ensembl chr  X:71,621,785...71,625,702
JBrowse link
G DCT dopachrome tautomerase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:50485|PMID:1537334) MGI
Ensembl
PMID:1537334 GO_REF:0000107 MGI:50485 NCBI chr13:75,590,366...75,730,956
Ensembl chr13:94,773,794...94,816,083
JBrowse link
G DOCK7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO (MGI:77000|PMID:2379821) MGI PMID:2379821 MGI:77000 NCBI chr 1:61,713,217...61,946,371
Ensembl chr 1:63,529,227...63,740,970
JBrowse link
G DRD2 dopamine receptor D2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3576468|PMID:9140068) MGI
Ensembl
PMID:9140068 GO_REF:0000107 MGI:3576468 NCBI chr11:108,289,838...108,357,174
Ensembl chr11:112,132,703...112,198,935
JBrowse link
G EDA ectodysplasin A acts_upstream_of_or_within ISO (MGI:53773|PMID:4561716) MGI PMID:4561716 MGI:53773 MGI:65389 NCBI chr  X:58,881,660...59,308,451 JBrowse link
G EDAR ectodysplasin A receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:54784|PMID:544312) MGI
Ensembl
PMID:544312 GO_REF:0000107 MGI:54784 NCBI chr2A:95,132,396...95,172,218
Ensembl chr2A:110,146,499...110,234,398
JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
ISO
IEA
homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
(MGI:77000|PMID:2379821)
RGD
Ensembl
MGI
PMID:2379821 PMID:8570650 GO_REF:0000107 MGI:77000 RGD:628515 NCBI chr13:59,112,349...59,136,615
Ensembl chr13:78,153,020...78,177,286
JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (MGI:1194987|PMID:9362463) MGI PMID:9362463 MGI:1194987 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FIG4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3715385|PMID:17572665), (MGI:5296993|PMID:22028665) MGI
Ensembl
PMID:17572665 PMID:22028665 GO_REF:0000107 MGI:3715385 MGI:5296993 NCBI chr 6:107,495,637...107,631,201
Ensembl chr 6:111,539,937...111,673,894
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr10:95,030,626...95,061,415
Ensembl chr10:98,526,113...98,552,922
JBrowse link
G HPS3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr 3:146,147,140...146,190,793
Ensembl chr 3:153,725,008...153,769,060
JBrowse link
G HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr11:18,313,846...18,357,558
Ensembl chr11:17,999,116...18,042,724
JBrowse link
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3522060|PMID:15265785), (MGI:61184|PMID:17247639)
(MGI:77000|PMID:2379821)
Ensembl
MGI
PMID:2379821 PMID:15265785 PMID:17247639 GO_REF:0000107 MGI:3522060 MGI:61184 MGI:77000 NCBI chr10:98,670,168...98,672,896
Ensembl chr10:102,139,439...102,141,766
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1351242|PMID:10620616) MGI
Ensembl
PMID:10620616 GO_REF:0000107 MGI:1351242 NCBI chr 4:69,199,543...69,282,323
Ensembl chr 4:75,761,946...75,844,473
JBrowse link
G LOC100967885 keratin, type II cytoskeletal 2 oral acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chr12:35,983,069...35,992,201
Ensembl chr12:36,761,017...36,770,200
JBrowse link
G LYST lysosomal trafficking regulator involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:73117|PMID:13943454)
(MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223)
RGD
Ensembl
MGI
PMID:2513223 PMID:4031470 PMID:7089489 PMID:12638234 PMID:13943454 GO_REF:0000107 MGI:55273 MGI:56449 MGI:73117 MGI:77039 RGD:1302441 NCBI chr 1:211,229,800...211,451,947
Ensembl chr 1:216,231,824...216,436,293
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI MGI:60250 NCBI chr19:2,570,068...2,583,505
Ensembl chr19:3,520,399...3,532,767
JBrowse link
G MITF melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180980|PMID:12086670)
(MGI:77000|PMID:2379821)
MGI
Ensembl
PMID:2379821 PMID:12086670 GO_REF:0000107 MGI:2180980 MGI:77000 NCBI chr 3:69,674,064...69,902,078
Ensembl chr 3:71,037,665...71,265,445
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:17247639 MGI:61184 MGI:77000 NCBI chr2B:124,716,573...124,781,829
Ensembl chr2B:243,569,782...243,633,177
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:3141922 PMID:7828830 GO_REF:0000107 MGI:68399 MGI:68866 MGI:77000 NCBI chr2B:103,204,959...103,296,122
Ensembl chr2B:221,809,123...221,877,814
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3712581|PMID:17523175) MGI PMID:17523175 MGI:3712581 NCBI chr 8:124,387,561...124,393,551
Ensembl chr 8:127,131,512...127,136,863
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873)
(MGI:1203760|PMID:9560409)
(MGI:73808|PMID:3422417)
PMID:10920234
(MGI:68399|PMID:3141922)
(MGI:56220|PMID:6098826), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:68866|PMID:7828830), (MGI:73393|PMID:7774591), (MGI:77000|PMID:2379821)
(MGI:55563|PMID:6305507)
(MGI:1203759|PMID:9560408), (MGI:5569175|PMID:24721909)
MGI PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 More... MGI:1203759 MGI:1203760 MGI:55563 MGI:5569175 MGI:56220 MGI:5779494 MGI:60423 MGI:61184 MGI:61192 MGI:68399 MGI:68866 MGI:73393 MGI:73808 MGI:77000 RGD:61493 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chr 1:57,916,267...57,961,812
Ensembl chr 1:59,626,793...59,666,809
JBrowse link
G NF1 neurofibromin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1350817|PMID:10594763), (MGI:1859711|PMID:10844550)
(MGI:1351242|PMID:10620616)
MGI
Ensembl
PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000107 MGI:1350817 MGI:1351242 MGI:1859711 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375), (MGI:61184|PMID:17247639), (MGI:73117|PMID:13943454), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 GO_REF:0000107 MGI:1202196 MGI:61184 MGI:73117 MGI:77000 NCBI chr15:1,811,728...2,192,018
Ensembl chr15:25,181,386...25,523,774
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
G RACK1 receptor for activated C kinase 1 acts_upstream_of_or_within ISO (MGI:5648195|PMID:23212600) MGI PMID:23212600 MGI:5648195 NCBI chr 5:176,462,991...176,470,153
Ensembl chr 5:183,712,665...183,720,128
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:45,341,857...45,345,544
Ensembl chr 8:42,723,971...42,730,904
JBrowse link
G SPARC secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO (MGI:5779494|PMID:25340873) MGI PMID:25340873 MGI:5779494 NCBI chr 5:147,087,903...147,112,466
Ensembl chr 5:153,090,181...153,115,750
JBrowse link
G SZT2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3852572|PMID:19624305) MGI
Ensembl
PMID:19624305 GO_REF:0000107 MGI:3852572 NCBI chr 1:42,691,292...42,754,046
Ensembl chr 1:44,068,998...44,129,456
JBrowse link
G TYR tyrosinase acts_upstream_of_or_within ISO (MGI:61184|PMID:17247639)
(MGI:1202196|PMID:9548375), (MGI:60423|PMID:13880466)
RGD
MGI
PMID:9548375 PMID:13880466 PMID:15760344 PMID:17247639 MGI:1202196 MGI:60423 MGI:61184 RGD:1599687 NCBI chr11:84,188,557...84,306,686
Ensembl chr11:87,769,606...87,888,138
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821)
(MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639)
MGI
Ensembl
PMID:2379821 PMID:13880466 PMID:17247639 GO_REF:0000107 MGI:60423 MGI:61184 MGI:77000 NCBI chr 9:12,502,610...12,550,203
Ensembl chr 9:12,950,831...12,996,799
JBrowse link
G VANGL1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5779494|PMID:25340873) MGI
Ensembl
PMID:25340873 GO_REF:0000107 MGI:5779494 NCBI chr 1:86,865,983...86,922,175
Ensembl chr 1:121,921,934...121,970,552
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:53893|PMID:4777306) MGI
Ensembl
PMID:4777306 GO_REF:0000107 MGI:53893 NCBI chr12:119,831,693...119,868,132
Ensembl chr12:123,201,663...123,236,019
JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POMC proopiomelanocortin involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:25,161,668...25,165,600
Ensembl chr2A:25,258,768...25,262,706
JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185), (MGI:2156164|PMID:8170972) MGI
Ensembl
PMID:8170972 PMID:11709185 GO_REF:0000107 MGI:2154874 MGI:2156164 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185) MGI
Ensembl
PMID:11709185 GO_REF:0000107 MGI:2154874 NCBI chr2A:90,862,070...90,909,833
Ensembl chr2A:112,337,927...112,385,079
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within ISO (MGI:3045416|PMID:15102850), (MGI:54946|PMID:7203014) MGI PMID:7203014 PMID:15102850 MGI:3045416 MGI:54946 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2177902|PMID:11912185) MGI
Ensembl
PMID:11912185 GO_REF:0000107 MGI:2177902 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G DCT dopachrome tautomerase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3041903|PMID:15060160) MGI
Ensembl
PMID:15060160 GO_REF:0000107 MGI:3041903 NCBI chr13:75,590,366...75,730,956
Ensembl chr13:94,773,794...94,816,083
JBrowse link
G EDNRB endothelin receptor type B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3055244|PMID:15322542) MGI
Ensembl
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr13:59,112,349...59,136,615
Ensembl chr13:78,153,020...78,177,286
JBrowse link
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr19:2,120,398...2,149,161
Ensembl chr19:3,074,483...3,102,124
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr 9:46,816,409...47,129,116
Ensembl chr 9:76,575,815...76,773,849
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205)
(MGI:3055244|PMID:15322542)
MGI
Ensembl
PMID:15322542 PMID:18454205 GO_REF:0000107 MGI:3055244 MGI:3778519 NCBI chr 4:69,199,543...69,282,323
Ensembl chr 4:75,761,946...75,844,473
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3513741|PMID:15550542) MGI
Ensembl
PMID:15550542 GO_REF:0000107 MGI:3513741 NCBI chr2B:103,204,959...103,296,122
Ensembl chr2B:221,809,123...221,877,814
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:3513741|PMID:15550542) MGI PMID:15550542 MGI:3513741 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2157189|PMID:11756244) MGI
Ensembl
PMID:11756244 GO_REF:0000107 MGI:2157189 NCBI chr15:1,811,728...2,192,018
Ensembl chr15:25,181,386...25,523,774
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr2B:109,441,938...109,541,449
Ensembl chr2B:228,022,453...228,121,874
JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2156131|PMID:11700328) Ensembl
MGI
PMID:11700328 GO_REF:0000107 MGI:2156131 NCBI chr 5:76,357,549...76,398,571
Ensembl chr 5:81,743,254...81,784,565
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
G ZIC2 Zic family member 2 acts_upstream_of_or_within ISO (MGI:1861752|PMID:10932191) MGI PMID:10932191 MGI:1861752 NCBI chr13:81,151,669...81,156,648 JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD27 ankyrin repeat domain 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:29,516,853...29,594,519
Ensembl chr19:38,264,485...38,342,604
JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,201,859...53,282,437
Ensembl chr16:71,568,863...71,648,744
JBrowse link
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:15,685,208...15,722,723
Ensembl chr19:16,671,053...16,703,067
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,110,419...1,161,826
Ensembl chr19:2,085,540...2,137,593
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:149,053,138...149,069,059 JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) ParkinsonsUK-UCL PMID:22511774 NCBI chr 6:144,339,323...144,354,885 JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:83,121,858...83,183,698
Ensembl chr11:86,710,358...86,773,142
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOD2 superoxide dismutase 2 acts_upstream_of_or_within ISO (MGI:3505659|PMID:15205258) MGI PMID:15205258 MGI:3505659 NCBI chr 6:157,562,814...157,610,155
Ensembl chr 6:162,576,082...162,589,960
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB17 RAB17, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:124,802,789...124,820,775
Ensembl chr2B:243,654,176...243,671,003
JBrowse link
G SHROOM2 shroom family member 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:2,418,883...2,580,853
Ensembl chr  X:9,755,524...9,832,733
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:33,026,525...33,052,252
Ensembl chr  X:40,730,677...40,756,209
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr10:95,030,626...95,061,415
Ensembl chr10:98,526,113...98,552,922
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5429122|PMID:22627278) MGI
Ensembl
PMID:22627278 GO_REF:0000107 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr12:45,178,058...45,369,042
Ensembl chr12:46,046,555...46,236,676
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 3:64,415,621...64,590,984
Ensembl chr 3:65,792,223...65,967,631
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185)
(MGI:3618415|PMID:16427619)
(MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
MGI
Ensembl
PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 GO_REF:0000107 MGI:2154874 MGI:2180980 MGI:3618415 MGI:81816 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:61,537,949...61,543,545
Ensembl chr  X:71,621,785...71,625,702
JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:85072|PMID:9012511) MGI
Ensembl
PMID:9012511 GO_REF:0000107 MGI:85072 NCBI chr20:55,652,770...55,678,486
Ensembl chr20:57,012,926...57,038,570
JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:85072|PMID:9012511)
(MGI:77000|PMID:2379821)
RGD
Ensembl
MGI
PMID:2379821 PMID:9012511 PMID:11709437 GO_REF:0000107 MGI:77000 MGI:85072 RGD:628459 NCBI chr13:59,112,349...59,136,615
Ensembl chr13:78,153,020...78,177,286
JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3796727|PMID:18397875) MGI
Ensembl
PMID:18397875 GO_REF:0000107 MGI:3796727 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:2175993|PMID:11836498) MGI PMID:11836498 MGI:2175993 NCBI chr10:95,030,626...95,061,415
Ensembl chr10:98,526,113...98,552,922
JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2175993|PMID:11836498) MGI
Ensembl
PMID:11836498 GO_REF:0000107 MGI:2175993 NCBI chr22:7,513,397...7,545,782
Ensembl chr22:25,236,360...25,268,699
JBrowse link
G HPS6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr10:98,670,168...98,672,896
Ensembl chr10:102,139,439...102,141,766
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:69,199,543...69,282,323
Ensembl chr 4:75,761,946...75,844,473
JBrowse link
G LOC100976603 olfactory receptor 51E2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,853,325...4,871,457
Ensembl chr11:4,520,050...4,521,012
JBrowse link
G LRMDA leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) UniProt PMID:23395477 NCBI chr10:71,957,984...73,085,285
Ensembl chr10:74,630,828...75,747,045
JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISO (MGI:5049797|PMID:21610032) UniProt PMID:21610032 MGI:5049797 NCBI chr 5:26,480,489...26,650,813
Ensembl chr 5:26,681,700...26,786,426
JBrowse link
G MITF melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180980|PMID:12086670)
(MGI:77000|PMID:2379821)
MGI
Ensembl
PMID:2379821 PMID:12086670 GO_REF:0000107 MGI:2180980 MGI:77000 NCBI chr 3:69,674,064...69,902,078
Ensembl chr 3:71,037,665...71,265,445
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) MGI PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chr2B:124,716,573...124,781,829
Ensembl chr2B:243,569,782...243,633,177
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 PMID:7828830 GO_REF:0000107 MGI:68866 MGI:77000 NCBI chr2B:103,204,959...103,296,122
Ensembl chr2B:221,809,123...221,877,814
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) MGI PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr15:1,811,728...2,192,018
Ensembl chr15:25,181,386...25,523,774
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:52947 MGI:77000 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
G SOX10 SRY-box transcription factor 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3701016|PMID:16790476) MGI
Ensembl
PMID:16790476 GO_REF:0000107 MGI:3701016 NCBI chr22:18,885,679...18,897,927
Ensembl chr22:36,713,310...36,723,439
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:77000|PMID:2379821) MGI
Ensembl
PMID:2379821 GO_REF:0000107 MGI:77000 NCBI chr 9:12,502,610...12,550,203
Ensembl chr 9:12,950,831...12,996,799
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 (Langereis blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:106,467,345...106,476,614
Ensembl chr2B:225,058,771...225,067,626
JBrowse link
G AP1S1 adaptor related protein complex 1 subunit sigma 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 7:93,294,826...93,301,202
Ensembl chr 7:106,536,452...106,543,316
JBrowse link
G AP1S2 adaptor related protein complex 1 subunit sigma 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr  X:8,449,885...8,478,932
Ensembl chr  X:15,807,476...15,836,172
JBrowse link
G AP1S3 adaptor related protein complex 1 subunit sigma 3 involved_in IEA UniProt GO_REF:0000117 NCBI chr2B:111,000,537...111,083,518
Ensembl chr2B:229,575,750...229,659,332
JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:95,030,626...95,061,415
Ensembl chr10:98,526,113...98,552,922
JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:7,513,397...7,545,782
Ensembl chr22:25,236,360...25,268,699
JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:149,053,138...149,069,059 JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774)
(PMID:23084991)
ParkinsonsUK-UCL
UniProt
PMID:22511774 PMID:23084991 NCBI chr 6:144,339,323...144,354,885 JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:83,121,858...83,183,698
Ensembl chr11:86,710,358...86,773,142
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:2,357,835...2,398,389
Ensembl chr  X:9,609,598...9,650,075
JBrowse link
G MLPH melanophilin acts_upstream_of_or_within ISO (MGI:2177987|PMID:11887186), (MGI:3614727|PMID:11886590)
(MGI:3028456|PMID:14730011)
MGI PMID:11886590 PMID:11887186 PMID:14730011 MGI:2177987 MGI:3028456 MGI:3614727 NCBI chr2B:124,716,573...124,781,829
Ensembl chr2B:243,569,782...243,633,177
JBrowse link
G MREG melanoregulin involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:103,204,959...103,296,122
Ensembl chr2B:221,809,123...221,877,814
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:1930900|PMID:11266470), (MGI:85369|PMID:8962090)
(MGI:3028456|PMID:14730011)
MGI PMID:8962090 PMID:11266470 PMID:14730011 MGI:1930900 MGI:3028456 MGI:85369 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G RAB27A RAB27A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:119,831,693...119,868,132
Ensembl chr12:123,201,663...123,236,019
JBrowse link
G VPS33B VPS33B late endosome and lysosome associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:69,691,717...69,715,617
Ensembl chr15:88,888,093...88,912,327
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:15,685,208...15,722,723
Ensembl chr19:16,671,053...16,703,067
JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1330543|PMID:9931340) MGI
Ensembl
PMID:9931340 GO_REF:0000107 MGI:1330543 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205
JBrowse link
G APOE apolipoprotein E involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:41,853,669...41,857,252
Ensembl chr19:50,459,906...50,463,490
JBrowse link
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:1202196|PMID:9548375) MGI PMID:9548375 MGI:1202196 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G BACE2 beta-secretase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:27,500,453...27,612,795
Ensembl chr21:40,831,203...40,938,280
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within ISO (MGI:3522060|PMID:15265785) MGI PMID:15265785 MGI:3522060 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1354542|PMID:11110696) MGI
Ensembl
PMID:11110696 GO_REF:0000107 MGI:1354542 Ensembl chr 4:6,787,943...6,788,596 JBrowse link
G GPR143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:2,357,835...2,398,389
Ensembl chr  X:9,609,598...9,650,075
JBrowse link
G KIF13A kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,593,535...17,836,915
Ensembl chr 6:17,966,994...18,190,286
JBrowse link
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:53824|PMID:4634048)
(MGI:3618562|PMID:16518687)
MGI PMID:4634048 PMID:16518687 MGI:3618562 MGI:53824 NCBI chr 1:211,229,800...211,451,947
Ensembl chr 1:216,231,824...216,436,293
JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:95,505,376...95,597,792
Ensembl chr2B:213,628,997...213,721,299
JBrowse link
G PMEL premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:32,946,951...32,958,205
Ensembl chr12:33,196,040...33,207,610
JBrowse link
G SHROOM2 shroom family member 2 involved_in ISO (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chr  X:2,418,883...2,580,853
Ensembl chr  X:9,755,524...9,832,733
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375) MGI
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chr 9:12,502,610...12,550,203
Ensembl chr 9:12,950,831...12,996,799
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (MGI:1202196|PMID:9548375) MGI PMID:9548375 MGI:1202196 NCBI chr20:30,583,038...30,592,726
Ensembl chr20:31,718,169...31,727,217
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (PMID:17182842) UniProt PMID:17182842 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G DCTN1 dynactin subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
Ensembl
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr2A:74,428,060...74,458,574
Ensembl chr2A:75,934,752...75,953,296
JBrowse link
G DCTN2 dynactin subunit 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
Ensembl
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr12:31,379,531...31,396,570
Ensembl chr12:31,636,884...31,655,458
JBrowse link
G GPR143 G protein-coupled receptor 143 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:2,357,835...2,398,389
Ensembl chr  X:9,609,598...9,650,075
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr15:45,337,117...45,438,826
Ensembl chr15:63,613,961...63,714,161
JBrowse link
G MREG melanoregulin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5492030|PMID:22275436) MGI
InterPro
Ensembl
PMID:22275436 GO_REF:0000002 GO_REF:0000107 MGI:5492030 NCBI chr2B:103,204,959...103,296,122
Ensembl chr2B:221,809,123...221,877,814
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:5569175|PMID:24721909)
(MGI:1202196|PMID:9548375)
(MGI:3653524|PMID:11266473)
(MGI:87417|PMID:9133672)
MGI PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 MGI:1202196 MGI:3653524 MGI:5569175 MGI:87417 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G RAB11A RAB11A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:44,810,880...44,833,438
Ensembl chr15:63,088,084...63,108,077
JBrowse link
G RAB11B RAB11B, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) UniProt PMID:21291502 MGI:5487521 NCBI chr19:7,676,095...7,690,177 JBrowse link
G RAB17 RAB17, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:124,802,789...124,820,775
Ensembl chr2B:243,654,176...243,671,003
JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISO (MGI:5526918|PMID:22854043) UniProt PMID:22854043 MGI:5526918 NCBI chr2A:65,149,922...65,193,305
Ensembl chr2A:66,274,809...66,318,290
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3653524|PMID:11266473) MGI
Ensembl
PMID:11266473 GO_REF:0000107 MGI:3653524 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPCN2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,139,512...64,227,913
Ensembl chr11:67,438,635...67,478,106
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3807630|PMID:17464332) MGI
Ensembl
PMID:17464332 GO_REF:0000107 MGI:3807630 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTSL4 ADAMTS like 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5698751|PMID:26405179) MGI
Ensembl
PMID:26405179 GO_REF:0000107 MGI:5698751 NCBI chr 1:125,893,739...125,905,337
Ensembl chr 1:129,541,795...129,553,376
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO7A myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405), (MGI:3629265|PMID:14609561)
(MGI:3047015|PMID:14978221)
MGI
Ensembl
PMID:14609561 PMID:14978221 PMID:15572405 GO_REF:0000107 MGI:3047015 MGI:3512820 MGI:3629265 NCBI chr11:72,187,024...72,265,931
Ensembl chr11:75,834,185...75,907,752
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405) MGI
Ensembl
PMID:14978221 PMID:15572405 GO_REF:0000107 MGI:3047015 MGI:3512820 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD63 CD63 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:33,181,896...33,186,123
Ensembl chr12:33,906,314...33,910,595
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:81816|PMID:8758925) MGI
Ensembl
PMID:8758925 GO_REF:0000107 MGI:81816 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (MGI:54133|PMID:1278263) MGI PMID:1278263 MGI:54133 NCBI chr 1:211,229,800...211,451,947
Ensembl chr 1:216,231,824...216,436,293
JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO7A myosin VIIA acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1267003|PMID:9620764)
(MGI:3512820|PMID:15572405)
MGI
Ensembl
PMID:9620764 PMID:15572405 GO_REF:0000107 MGI:1267003 MGI:3512820 NCBI chr11:72,187,024...72,265,931
Ensembl chr11:75,834,185...75,907,752
JBrowse link
G RAB27A RAB27A, member RAS oncogene family acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3512820|PMID:15572405) MGI
Ensembl
PMID:15572405 GO_REF:0000107 MGI:3512820 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:2,570,068...2,583,505
Ensembl chr19:3,520,399...3,532,767
JBrowse link
G TBX2 T-box transcription factor 2 acts_upstream_of_negative_effect
involved_in
ISO
IEA
(MGI:6814712|PMID:26971330) UniProt
Ensembl
PMID:26971330 GO_REF:0000107 MGI:6814712 NCBI chr17:55,501,932...55,511,537
Ensembl chr17:60,622,098...60,630,189
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894988|PMID:9241272) MGI
Ensembl
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:894988|PMID:9241272) MGI
Ensembl
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr12:45,178,058...45,369,042
Ensembl chr12:46,046,555...46,236,676
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 3:64,415,621...64,590,984
Ensembl chr 3:65,792,223...65,967,631
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618415|PMID:16427619) MGI
Ensembl
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G KITLG KIT ligand acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3618415|PMID:16427619) MGI
Ensembl
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr12:86,036,501...86,124,274
Ensembl chr12:89,341,921...89,436,758
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDH3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:49,015,115...49,071,903
Ensembl chr16:68,407,625...68,465,287
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:60945|PMID:14138974)
(MGI:3778519|PMID:18454205)
MGI
Ensembl
PMID:14138974 PMID:18454205 GO_REF:0000107 MGI:3778519 MGI:60945 NCBI chr12:45,178,058...45,369,042
Ensembl chr12:46,046,555...46,236,676
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3778519|PMID:18454205) MGI
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 3:64,415,621...64,590,984
Ensembl chr 3:65,792,223...65,967,631
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3767491|PMID:15818405) MGI
Ensembl
PMID:15818405 GO_REF:0000107 MGI:3767491 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3767491|PMID:15818405) MGI
Ensembl
PMID:15818405 GO_REF:0000107 MGI:3767491 NCBI chr2A:90,862,070...90,909,833
Ensembl chr2A:112,337,927...112,385,079
JBrowse link
G EDN3 endothelin 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:60945|PMID:14138974) MGI
Ensembl
PMID:14138974 GO_REF:0000107 MGI:60945 NCBI chr20:55,652,770...55,678,486
Ensembl chr20:57,012,926...57,038,570
JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2450053|PMID:12538872) MGI
Ensembl
PMID:12538872 GO_REF:0000107 MGI:2450053 NCBI chr12:119,831,693...119,868,132
Ensembl chr12:123,201,663...123,236,019
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPNS2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5442641|PMID:22664872) MGI
Ensembl
PMID:22664872 GO_REF:0000107 MGI:5442641 NCBI chr17:4,554,524...4,593,873
Ensembl chr17:4,547,597...4,584,493
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNA11 G protein subunit alpha 11 acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr19:2,120,398...2,149,161
Ensembl chr19:3,074,483...3,102,124
JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (MGI:3055244|PMID:15322542) MGI PMID:15322542 MGI:3055244 NCBI chr 9:46,816,409...47,129,116
Ensembl chr 9:76,575,815...76,773,849
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) UniProt PMID:18697795 MGI:3813974 NCBI chr  X:2,357,835...2,398,389
Ensembl chr  X:9,609,598...9,650,075
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) UniProt PMID:18697795 MGI:3813974 NCBI chr  X:2,357,835...2,398,389
Ensembl chr  X:9,609,598...9,650,075
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRK3 G protein-coupled receptor kinase 3 ISO RGD PMID:17573483 RGD:5685371 NCBI chr22:6,579,664...6,789,846
Ensembl chr22:24,353,533...24,509,560
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15425
    pigmentation 102
      cellular pigmentation + 47
      developmental pigmentation + 53
      ocellus pigmentation + 0
      pigment accumulation + 11
      pigment metabolic process involved in pigmentation + 3
      regulation of pigmentation + 14
paths to the root