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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of secondary metabolic process
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Accession:GO:0043455 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of secondary metabolism, the chemical reactions and pathways involving compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon.
Synonyms:exact_synonym: regulation of secondary metabolism

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negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125 		JBrowse link
G Opn3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,833,495...8,876,631
Ensembl chrNW_004936526:8,833,455...8,876,729 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISO (PMID:16272156) UniProt PMID:16272156 NCBI chrNW_004936576:5,583,847...5,746,583
Ensembl chrNW_004936576:5,583,805...5,746,671 		JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18166528) Ensembl
MGI		 PMID:18166528 GO_REF:0000107 NCBI chrNW_004936471:10,470,078...10,492,334
Ensembl chrNW_004936471:10,470,046...10,493,104 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:7,580,495...7,647,471
Ensembl chrNW_004936473:7,579,780...7,611,923 		JBrowse link
G Asip agouti signaling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,341,667...6,346,440
Ensembl chrNW_004936561:6,341,623...6,346,458 		JBrowse link
G Atp7a ATPase copper transporting alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Cdh3 cadherin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,908,031...18,954,402
Ensembl chrNW_004936475:18,906,493...18,955,072 		JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:3,019,829...3,030,280
Ensembl chrNW_004936659:3,012,012...3,026,883 		JBrowse link
G Opn3 opsin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:8,833,495...8,876,631
Ensembl chrNW_004936526:8,833,455...8,876,729 		JBrowse link
G Pmel premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:368,064...379,085
Ensembl chrNW_004936646:365,809...379,130 		JBrowse link
G Rab38 RAB38, member RAS oncogene family ISO RGD PMID:17043139 RGD:152025192 NCBI chrNW_004936736:1,304,290...1,360,412
Ensembl chrNW_004936736:1,304,185...1,361,221 		JBrowse link
G Tyrp1 tyrosinase related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:6,537,448...6,555,440
Ensembl chrNW_004936539:6,537,509...6,556,513 		JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctns cystinosin, lysosomal cystine transporter involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:342,964...360,890
Ensembl chrNW_004936677:343,042...360,879 		JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:2,011,838...2,019,119
Ensembl chrNW_004936588:2,011,506...2,019,125 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16037214) Ensembl
MGI		 PMID:16037214 GO_REF:0000107 NCBI chrNW_004936535:9,177,305...9,242,743
Ensembl chrNW_004936535:9,177,143...9,242,566 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    cellular process 17016
      metabolic process 11317
        regulation of metabolic process 5915
          regulation of secondary metabolic process 15
            regulation of fumagillin biosynthetic process + 0
            regulation of gibberellin biosynthetic process + 0
            regulation of juvenile hormone metabolic process + 0
            regulation of melanization defense response + 0
            regulation of penicillin metabolic process + 0
            regulation of phenylpropanoid metabolic process + 0
            regulation of secondary metabolite biosynthetic process + 15
Path 2
Term Annotations click to browse term
  biological_process 17413
    biological regulation 11405
      regulation of biological process 11039
        regulation of cellular process 10717
          regulation of metabolic process 5915
            regulation of secondary metabolic process 15
              regulation of fumagillin biosynthetic process + 0
              regulation of gibberellin biosynthetic process + 0
              regulation of juvenile hormone metabolic process + 0
              regulation of melanization defense response + 0
              regulation of penicillin metabolic process + 0
              regulation of phenylpropanoid metabolic process + 0
              regulation of secondary metabolite biosynthetic process + 15
paths to the root