Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:bHLH transcription factor binding
go back to main search page
Accession:GO:0043425 term browser browse the term
Definition:Binding to a basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transcriptional networks of many developmental pathways.


show annotations for term's descendants           Sort by:
bHLH transcription factor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 enables ISO UniProtKB:P15884|UniProtKB:P15923 (PMID:10903890), (PMID:11940670) RGD PMID:10903890 PMID:11940670 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 enables ISO UniProtKB:P15806 (MGI:7484271|PMID:10611232) RGD PMID:10611232 MGI:7484271 NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406 		JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 enables ISO UniProtKB:Q9C0J9|UniProtKB:Q9WTL8 (PMID:12397359), (PMID:15193144) RGD PMID:12397359 PMID:15193144 NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774 		JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 enables ISO UniProtKB:O14503 (PMID:15193144)
UniProtKB:Q99PV5|UniProtKB:Q9WTL8 (MGI:2388855|PMID:12397359), (MGI:5297791|PMID:12657651), (MGI:5306297|PMID:17487425)		 RGD PMID:12397359 PMID:12657651 PMID:15193144 PMID:17487425 MGI:2388855 MGI:5297791 MGI:5306297 NCBI chr 4:178,834,264...178,838,618
Ensembl chr 4:178,834,271...178,838,468 		JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 enables ISO UniProtKB:O14503|UniProtKB:Q99PV5 (MGI:2388855|PMID:12397359), (MGI:5306311|PMID:15560782), (MGI:5430897|PMID:15193144) RGD PMID:12397359 PMID:15193144 PMID:15560782 MGI:2388855 MGI:5306311 MGI:5430897 NCBI chr 1:167,331,756...167,430,235
Ensembl chr 1:167,331,633...167,430,231 		JBrowse link
G Ep300 E1A binding protein p300 IPI RGD PMID:11466227 RGD:2312273 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Fhl2 four and a half LIM domains 2 enables ISO
IEA		 UniProtKB:Q64279 (MGI:3511603|PMID:15509787)
GO_REF:0000107		 RGD
Ensembl		 PMID:15509787 GO_REF:0000107 MGI:3511603 NCBI chr 9:45,388,979...45,462,421
Ensembl chr 9:45,388,981...45,431,192 		JBrowse link
G Figla folliculogenesis specific bHLH transcription factor enables ISO UniProtKB:P15923-1 (PMID:15044608) RGD PMID:15044608 NCBI chr 4:118,432,517...118,436,846
Ensembl chr 4:118,432,765...118,436,690 		JBrowse link
G Foxh1 forkhead box H1 enables ISO UniProtKB:P15923|UniProtKB:Q99081 (PMID:21828274) RGD PMID:21828274 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 enables ISO UniProtKB:P15923-1|UniProtKB:P15923-2|UniProtKB:Q99081 (PMID:11802795)
UniProtKB:P15806 (MGI:7484271|PMID:10611232)		 RGD PMID:10611232 PMID:11802795 MGI:7484271 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Id3 inhibitor of DNA binding 3 enables TAS
ISO		 UniProtKB:P15923-1 (MGI:82529|PMID:8759016) RGD PMID:8759016 PMID:11316735 MGI:82529, RGD:1549435 NCBI chr 5:148,372,784...148,374,353
Ensembl chr 5:148,372,762...148,374,349 		JBrowse link
G Ikzf4 IKAROS family zinc finger 4 enables ISO PR:P10085 (PMID:22638570) RGD PMID:22638570 NCBI chr 7:1,063,283...1,102,940
Ensembl chr 7:1,056,890...1,084,341 		JBrowse link
G Isl1 ISL LIM homeobox 1 enables ISO
IEA		 UniProtKB:Q13562 (PMID:16321656)
GO_REF:0000107		 RGD
Ensembl		 PMID:16321656 GO_REF:0000107 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Lmo2 LIM domain only 2 enables ISO UniProtKB:Q02577 (PMID:16314316) RGD PMID:16314316 NCBI chr 3:90,355,234...90,377,970
Ensembl chr 3:90,365,883...90,377,953 		JBrowse link
G Map3k10 mitogen activated protein kinase kinase kinase 10 enables ISO UniProtKB:P15923 (PMID:19801649) RGD PMID:19801649 NCBI chr 1:82,955,784...82,974,084
Ensembl chr 1:82,955,207...82,974,084 		JBrowse link
G Myod1 myogenic differentiation 1 enables ISO UniProtKB:P15923-1 (MGI:1261954|PMID:2503252) RGD PMID:2503252 MGI:1261954 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 enables ISO (PMID:16673016) RGD PMID:16673016 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159 		JBrowse link
G Psmd9 proteasome 26S subunit, non-ATPase 9 enables IPI
IDA		 PMID:10567574 RGD
BHF-UCL		 PMID:10567574 PMID:10567574 RGD:633869, RGD:633869 NCBI chr12:33,337,182...33,357,468 JBrowse link
G Runx2 RUNX family transcription factor 2 enables IEA
ISO		 GO_REF:0000107
PR:Q61039|PR:Q64279 (PMID:19144722)		 Ensembl
RGD		 PMID:19144722 GO_REF:0000107 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Scx scleraxis bHLH transcription factor enables ISO UniProtKB:P15923 (PMID:10775504)
UniProtKB:P21677 (MGI:5294531|PMID:19828133)		 RGD PMID:10775504 PMID:19828133 MGI:5294531 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Sirt1 sirtuin 1 enables ISO UniProtKB:P01106|UniProtKB:Q14469|UniProtKB:Q9UBP5 (PMID:12535671), (PMID:21807113) RGD PMID:12535671 PMID:21807113 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Smad3 SMAD family member 3 enables ISO UniProtKB:Q99081 (PMID:21828274) RGD PMID:21828274 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox9 SRY-box transcription factor 9 enables IPI PMID:19828133 UniProt PMID:19828133 RGD:8553796 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sp1 Sp1 transcription factor enables ISO UniProtKB:Q99PV5 (MGI:5297791|PMID:12657651) RGD PMID:12657651 MGI:5297791 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Tcf12 transcription factor 12 enables ISO UniProtKB:P15923 (PMID:21828274) RGD PMID:21828274 NCBI chr 8:72,490,447...72,799,265
Ensembl chr 8:72,492,567...72,799,201 		JBrowse link
G Tcf15 transcription factor 15 enables ISO UniProtKB:P15806 (MGI:6508495|PMID:15226298), (MGI:6508503|PMID:23395635) RGD PMID:15226298 PMID:23395635 MGI:6508495 MGI:6508503 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tcf21 transcription factor 21 enables ISO UniProtKB:P15923 (PMID:12493738)
UniProtKB:P15806 (MGI:1203942|PMID:9545521)		 RGD PMID:9545521 PMID:12493738 MGI:1203942 NCBI chr 1:22,701,353...22,704,212
Ensembl chr 1:22,701,353...22,704,202 		JBrowse link
G Tcf3 transcription factor 3 enables IPI
ISO
IEA		 UniProtKB:O35437|UniProtKB:P26687|UniProtKB:Q01978|UniProtKB:Q60756|UniProtKB:Q64279 (MGI:1203942|PMID:9545521), (MGI:6508495|PMID:15226298), (MGI:6508503|PMID:23395635), (MGI:7484271|PMID:10611232)
GO_REF:0000107
PMID:19828133
PMID:15831523
UniProtKB:Q13562|UniProtKB:Q7RTU7|UniProtKB:Q99081 (PMID:10545951), (PMID:10775504), (PMID:21828274)
UniProtKB:Q15672 (PMID:10749989)		 RGD
Ensembl		 PMID:9545521 PMID:10545951 PMID:10611232 PMID:10749989 PMID:10775504 More... GO_REF:0000107 MGI:1203942 MGI:6508495 MGI:6508503 MGI:7484271, RGD:633869, RGD:8553796, RGD:8553441 NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314 		JBrowse link
G Tcf4 transcription factor 4 enables IPI PMID:15831523 UniProt PMID:15831523 RGD:8553441 NCBI chr18:62,941,739...63,288,126
Ensembl chr18:62,943,782...63,284,425 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 enables ISO UniProtKB:P15923-1 (PMID:10749989)
UniProtKB:P15806 (MGI:6508503|PMID:23395635)		 RGD PMID:10749989 PMID:23395635 MGI:6508503 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Ube2i ubiquitin-conjugating enzyme E2I IPI RGD PMID:9013644 RGD:730030 NCBI chr10:14,277,749...14,294,681
Ensembl chr10:69,701,618...69,702,443
Ensembl chr10:69,701,618...69,702,443 		JBrowse link
G Usf1 upstream transcription factor 1 enables ISO UniProtKB:Q15853 (PMID:8576131) RGD PMID:8576131 NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885 		JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting enables ISO
IEA		 UniProtKB:P22415 (PMID:8576131)
GO_REF:0000107		 RGD
Ensembl		 PMID:8576131 GO_REF:0000107 NCBI chr 1:86,174,703...86,185,942
Ensembl chr 1:86,174,703...86,185,617 		JBrowse link
MRF binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe40 basic helix-loop-helix family, member e40 enables IEA
ISO		 GO_REF:0000107
(MGI:5306297|PMID:17487425)		 Ensembl
RGD		 PMID:17487425 GO_REF:0000107 MGI:5306297 NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774 		JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 enables ISO
IEA		 (MGI:5297791|PMID:12657651), (MGI:5306297|PMID:17487425)
GO_REF:0000107		 RGD
Ensembl		 PMID:12657651 PMID:17487425 GO_REF:0000107 MGI:5297791 MGI:5306297 NCBI chr 4:178,834,264...178,838,618
Ensembl chr 4:178,834,271...178,838,468 		JBrowse link
G Crebbp CREB binding protein enables IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:8621548)		 Ensembl
UniProt
RGD		 PMID:8621548 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Csrp3 cysteine and glycine rich protein 3 enables IDA PMID:9234731 MGI PMID:9234731 RGD:10047266 NCBI chr 1:98,528,067...98,546,647
Ensembl chr 1:98,528,068...98,546,653 		JBrowse link
G Kdm1a lysine demethylase 1A enables ISO (PMID:20833138)
UniProtKB:P10085 (MGI:4838688|PMID:20833138)		 RGD PMID:20833138 MGI:4838688 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Klf5 KLF transcription factor 5 enables ISO PR:P10085|PR:Q60929 (PMID:27743478) RGD PMID:27743478 NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21010
    binding 18037
      protein binding 14764
        transcription factor binding 663
          DNA-binding transcription factor binding 537
            bHLH transcription factor binding 37
              MRF binding 6
paths to the root