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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle tissue regeneration
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Accession:GO:0043403 term browser browse the term
Definition:The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
Synonyms:related_synonym: myofiber turnover



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skeletal muscle tissue regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bin3 bridging integrator 3 acts_upstream_of_or_within ISO MGI:3512131 (MGI:5517720|PMID:23872330) RGD PMID:23872330 MGI:5517720 NCBI chr15:45,173,725...45,212,607
Ensembl chr15:45,173,732...45,212,604
JBrowse link
G Cflar CASP8 and FADD-like apoptosis regulator involved_in ISO (MGI:5707584|PMID:21364645) RGD PMID:21364645 MGI:5707584 NCBI chr 9:60,185,338...60,236,173
Ensembl chr 9:60,185,452...60,237,034
JBrowse link
G Dag1 dystroglycan 1 IEP RGD PMID:12086334 RGD:11541049 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Dmd dystrophin IEP RGD PMID:12086334 RGD:11541049 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207
JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO MGI:1857883 (MGI:3843552|PMID:19286669) RGD PMID:19286669 MGI:3843552 NCBI chr 4:116,490,877...116,690,709
Ensembl chr 4:116,490,616...116,690,709
JBrowse link
G Eno3 enolase 3 IEP RGD PMID:16752196 RGD:2301764 NCBI chr10:55,370,531...55,375,921
Ensembl chr10:55,366,975...55,375,921
JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO (MGI:3513707|PMID:15601660) RGD PMID:15601660 MGI:3513707 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158814 (MGI:3662804|PMID:16962942)
Ensembl
RGD
PMID:16962942 GO_REF:0000107 MGI:3662804 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
JBrowse link
G Hdgfl2 HDGF like 2 involved_in ISO (MGI:6442596|PMID:32459350) RGD PMID:32459350 MGI:6442596 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186
JBrowse link
G Ifrd1 interferon-related developmental regulator 1 acts_upstream_of_or_within ISO MGI:3043556 (MGI:3041924|PMID:15060170) RGD PMID:15060170 MGI:3041924 NCBI chr 6:57,269,395...57,317,833
Ensembl chr 6:57,269,384...57,288,990
JBrowse link
G Klf5 KLF transcription factor 5 acts_upstream_of_or_within ISO MGI:4353154|MGI:4421792 (MGI:5823533|PMID:27743478) RGD PMID:27743478 MGI:5823533 NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445
JBrowse link
G Kpna1 karyopherin subunit alpha 1 acts_upstream_of_or_within ISO MGI:3775202 (MGI:5823554|PMID:27434733) RGD PMID:27434733 MGI:5823554 NCBI chr11:64,715,844...64,774,647
Ensembl chr11:64,717,563...64,774,623
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 involved_in ISO (MGI:5547845|PMID:24132234) RGD PMID:24132234 MGI:5547845 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
JBrowse link
G Mstn myostatin involved_in IEP
ISO
(MGI:5789848|PMID:26923583) RGD PMID:26923583 PMID:11206133 MGI:5789848, RGD:2303599 NCBI chr 9:48,453,982...48,458,809
Ensembl chr 9:48,452,533...48,458,933
JBrowse link
G Mtpn myotrophin IEP RGD PMID:12467730 RGD:632798 NCBI chr 4:64,159,273...64,186,686
Ensembl chr 4:64,157,641...64,186,724
JBrowse link
G Myf6 myogenic factor 6 IMP RGD PMID:12707053 RGD:1600530 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852
JBrowse link
G Mymk myomaker, myoblast fusion factor acts_upstream_of_or_within ISO MGI:4841439 (MGI:5608518|PMID:25085416) RGD PMID:25085416 MGI:5608518 NCBI chr 3:10,388,361...10,397,364
Ensembl chr 3:10,388,361...10,397,343
JBrowse link
G Mymx myomixer, myoblast fusion factor involved_in ISO (MGI:6153677|PMID:29581287) RGD PMID:29581287 MGI:6153677 NCBI chr 9:15,396,638...15,398,264
Ensembl chr 9:15,397,144...15,398,263
JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of
involved_in
IEP
ISO
IMP
(MGI:3692808|PMID:17028574)
(MGI:5706660|PMID:26658965)
RGD PMID:17028574 PMID:26658965 PMID:18077604 PMID:12063168 MGI:3692808 MGI:5706660, RGD:9686074, RGD:729226 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
JBrowse link
G Myog myogenin IEP RGD PMID:10867795 RGD:9686125 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Naca nascent polypeptide associated complex subunit alpha involved_in ISO (MGI:4867362|PMID:21071677) RGD PMID:21071677 MGI:4867362 NCBI chr 7:468,862...481,992
Ensembl chr 7:469,723...481,992
JBrowse link
G Nfix nuclear factor I X involved_in
acts_upstream_of_or_within
ISO (MGI:5789848|PMID:26923583)
MGI:3802570 (MGI:6508189|PMID:32183151)
MGI:3802570 (MGI:5789848|PMID:26923583), (MGI:6099179|PMID:29057908)
RGD PMID:26923583 PMID:29057908 PMID:32183151 MGI:5789848 MGI:6099179 MGI:6508189 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (MGI:1206147|PMID:9608680) RGD PMID:9608680 MGI:1206147 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979
JBrowse link
G Pkm pyruvate kinase M1/2 IDA RGD PMID:145474 RGD:2303143 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599
JBrowse link
G Plau plasminogen activator, urokinase IMP RGD PMID:12919869 RGD:1581928 NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
JBrowse link
G Plaur plasminogen activator, urokinase receptor IEP RGD PMID:12919869 RGD:1581928 NCBI chr 1:80,053,441...80,068,384
Ensembl chr 1:80,050,324...80,068,595
JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO MGI:4946396 (MGI:4936779|PMID:21131290) RGD PMID:21131290 MGI:4936779 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059
JBrowse link
G Sgca sarcoglycan, alpha IEP RGD PMID:12086334 RGD:11541049 NCBI chr10:79,904,698...79,922,813
Ensembl chr10:79,908,738...79,922,813
JBrowse link
G Sox15 SRY-box transcription factor 15 acts_upstream_of_or_within ISO MGI:3056078 (MGI:3055629|PMID:15367664) RGD PMID:15367664 MGI:3055629 NCBI chr10:54,373,602...54,376,591
Ensembl chr10:54,372,403...54,376,591
JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex acts_upstream_of_or_within ISO MGI:2135565|MGI:5645258 (MGI:6094668|PMID:27159388) RGD PMID:27159388 MGI:6094668 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
G Vim vimentin IEP RGD PMID:18941770 RGD:6480441 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO MGI:3582610 (MGI:3581945|PMID:15673614) RGD PMID:15673614 MGI:3581945 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
myoblast differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:5312165 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Mapk14 mitogen activated protein kinase 14 acts_upstream_of_or_within ISO (MGI:4838005|PMID:20610565) RGD PMID:20610565 MGI:4838005 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mir489 microRNA 489 acts_upstream_of_or_within ISO (MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:5312165 NCBI chr 4:31,693,355...31,693,460
Ensembl chr 4:31,693,355...31,693,460
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO MGI:3582610 (MGI:3581945|PMID:15673614) RGD PMID:15673614 MGI:3581945 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
myoblast fusion involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 Cd81 molecule involved_in ISS
ISO
GO_REF:0000024
(MGI:6282938|PMID:23575678)
UniProt
RGD
PMID:23575678 GO_REF:0000024 MGI:6282938 NCBI chr 1:198,235,861...198,251,660
Ensembl chr 1:198,241,484...198,251,660
JBrowse link
G Cd9 CD9 molecule involved_in ISS
ISO
GO_REF:0000024
(MGI:6282938|PMID:23575678)
UniProt
RGD
PMID:23575678 GO_REF:0000024 MGI:6282938 NCBI chr 4:158,256,328...158,289,136
Ensembl chr 4:158,256,328...158,289,222
JBrowse link
G Mymk myomaker, myoblast fusion factor acts_upstream_of_or_within ISO MGI:4841439 (MGI:5608518|PMID:25085416) RGD PMID:25085416 MGI:5608518 NCBI chr 3:10,388,361...10,397,364
Ensembl chr 3:10,388,361...10,397,343
JBrowse link
G Mymx myomixer, myoblast fusion factor involved_in ISO (MGI:6153677|PMID:29581287)
(PMID:35642635)
RGD PMID:29581287 PMID:35642635 MGI:6153677 NCBI chr 9:15,396,638...15,398,264
Ensembl chr 9:15,397,144...15,398,263
JBrowse link
G Ptgfrn prostaglandin F2 receptor inhibitor involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:6282938|PMID:23575678)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23575678 GO_REF:0000024 GO_REF:0000107 MGI:6282938 NCBI chr 2:188,469,521...188,544,795
Ensembl chr 2:188,469,521...188,544,795
JBrowse link
myoblast migration involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin1 akirin 1 involved_in IBA
ISO
PMID:21873635
(MGI:3850794|PMID:19406121)
RGD PMID:19406121 PMID:21873635 MGI:3850794, RGD:13792537 NCBI chr 5:135,989,378...136,004,782
Ensembl chr 5:135,989,465...136,004,762
JBrowse link
G Anxa1 annexin A1 involved_in IBA
ISO
PMID:21873635
(MGI:5619736|PMID:23144744)
RGD PMID:23144744 PMID:21873635 MGI:5619736, RGD:13792537 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Bin3 bridging integrator 3 acts_upstream_of_or_within ISO MGI:3512131 (MGI:5517720|PMID:23872330) RGD PMID:23872330 MGI:5517720 NCBI chr15:45,173,725...45,212,607
Ensembl chr15:45,173,732...45,212,604
JBrowse link
G Mstn myostatin involved_in ISS
ISO
GO_REF:0000024
(MGI:3850794|PMID:19406121)
UniProt
RGD
PMID:19406121 GO_REF:0000024 MGI:3850794 NCBI chr 9:48,453,982...48,458,809
Ensembl chr 9:48,452,533...48,458,933
JBrowse link
myotube cell development involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmem182 transmembrane protein 182 involved_in ISO (MGI:6810807|PMID:34427057) RGD PMID:34427057 MGI:6810807 NCBI chr 9:43,059,432...43,111,318
Ensembl chr 9:43,059,439...43,111,317
JBrowse link
myotube differentiation involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl9 BCL9, transcription coactivator acts_upstream_of_or_within ISO MGI:1933114 (MGI:4368064|PMID:19699733) RGD PMID:19699733 MGI:4368064 NCBI chr 2:184,760,616...184,846,261
Ensembl chr 2:184,760,618...184,786,435
JBrowse link
G Klf5 KLF transcription factor 5 acts_upstream_of_or_within ISO MGI:4353154|MGI:4421792 (MGI:5823533|PMID:27743478) RGD PMID:27743478 MGI:5823533 NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445
JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within ISO (MGI:48687|PMID:1348494) RGD PMID:1348494 MGI:48687 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
JBrowse link
G Tmem182 transmembrane protein 182 involved_in ISO (MGI:6810807|PMID:34427057) RGD PMID:34427057 MGI:6810807 NCBI chr 9:43,059,432...43,111,318
Ensembl chr 9:43,059,439...43,111,317
JBrowse link
negative regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myoz1 myozenin 1 involved_in ISO (MGI:3831256|PMID:18846255) RGD PMID:18846255 MGI:3831256 NCBI chr15:3,644,333...3,651,584
Ensembl chr15:3,644,368...3,652,884
JBrowse link
positive regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Capn3 calpain 3 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5306562|PMID:20139084)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20139084 GO_REF:0000024 GO_REF:0000107 MGI:5306562 NCBI chr 3:107,407,518...107,457,858
Ensembl chr 3:107,407,850...107,457,858
JBrowse link
G Sox15 SRY-box transcription factor 15 involved_in ISO (MGI:3714565|PMID:17363903) RGD PMID:17363903 MGI:3714565 NCBI chr10:54,373,602...54,376,591
Ensembl chr10:54,372,403...54,376,591
JBrowse link
positive regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hopx HOP homeobox acts_upstream_of_or_within ISO MGI:2389244 (MGI:3708191|PMID:17192267) RGD PMID:17192267 MGI:3708191 NCBI chr14:31,055,912...31,082,909
Ensembl chr14:31,075,148...31,082,909
JBrowse link
G Mir675 microRNA 675 acts_upstream_of_or_within ISO (MGI:5566551|PMID:24532688) RGD PMID:24532688 MGI:5566551 NCBI chr 1:197,732,275...197,732,358
Ensembl chr 1:197,732,275...197,732,358
JBrowse link
G Myod1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within
ISS
ISO
PMID:17028574
(MGI:3692808|PMID:17028574)
RGD PMID:17028574 PMID:17028574 MGI:3692808, RGD:8554766 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta involved_in ISO (MGI:5319147|PMID:22040534) RGD PMID:22040534 MGI:5319147 NCBI chr20:6,298,785...6,363,970
Ensembl chr20:6,298,785...6,363,968
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 IEP RGD PMID:10672325 RGD:1601614 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
regulation of satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gjd4 gap junction protein, delta 4 acts_upstream_of_or_within ISO MGI:5009133 (MGI:5008546|PMID:21272575) RGD PMID:21272575 MGI:5008546 NCBI chr17:57,349,877...57,352,446
Ensembl chr17:57,349,877...57,352,446
JBrowse link
regulation of skeletal muscle tissue regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2rx5 purinergic receptor P2X 5 IMP RGD PMID:12135987 RGD:729229 NCBI chr10:57,777,737...57,789,426
Ensembl chr10:57,777,819...57,789,423
JBrowse link
G Spaar small regulatory polypeptide of amino acid response involved_in ISO (MGI:5822922|PMID:28024296) RGD PMID:28024296 MGI:5822922 NCBI chr 5:57,985,569...57,991,972 JBrowse link
satellite cell activation involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf5 KLF transcription factor 5 acts_upstream_of_or_within ISO MGI:4353154|MGI:4421792 (MGI:5823533|PMID:27743478) RGD PMID:27743478 MGI:5823533 NCBI chr15:76,060,320...76,079,445
Ensembl chr15:76,064,258...76,079,445
JBrowse link
G Kpna1 karyopherin subunit alpha 1 acts_upstream_of_or_within ISO MGI:3775202 (MGI:5823554|PMID:27434733) RGD PMID:27434733 MGI:5823554 NCBI chr11:64,715,844...64,774,647
Ensembl chr11:64,717,563...64,774,623
JBrowse link
skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:2661097|MGI:3574960 (MGI:4950630|PMID:21498568) RGD PMID:21498568 MGI:4950630 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G Fzd7 frizzled class receptor 7 acts_upstream_of_or_within ISO (MGI:3849215|PMID:19497282) RGD PMID:19497282 MGI:3849215 NCBI chr 9:60,931,433...60,934,252
Ensembl chr 9:60,930,875...60,935,781
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:17531227)
GO_REF:0000107
RGD
Ensembl
PMID:17531227 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Selenon selenoprotein N involved_in ISO (MGI:4936779|PMID:21131290) RGD PMID:21131290 MGI:4936779 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059
JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (MGI:3849215|PMID:19497282) RGD PMID:19497282 MGI:3849215 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19898
    developmental process 7021
      developmental growth 871
        tissue regeneration 103
          skeletal muscle tissue regeneration 55
            myoblast differentiation involved in skeletal muscle regeneration + 4
            myoblast migration involved in skeletal muscle regeneration 4
            myoblast proliferation involved in skeletal muscle regeneration 0
            myotube differentiation involved in skeletal muscle regeneration + 9
            negative regulation of skeletal muscle tissue regeneration + 1
            positive regulation of skeletal muscle tissue regeneration + 7
            regulation of skeletal muscle tissue regeneration + 11
            satellite cell activation involved in skeletal muscle regeneration + 5
            skeletal muscle regeneration at neuromuscular junction 0
            skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
Path 2
Term Annotations click to browse term
  biological_process 19898
    developmental process 7021
      anatomical structure development 6456
        regeneration 336
          tissue regeneration 103
            skeletal muscle tissue regeneration 55
              myoblast differentiation involved in skeletal muscle regeneration + 4
              myoblast migration involved in skeletal muscle regeneration 4
              myoblast proliferation involved in skeletal muscle regeneration 0
              myotube differentiation involved in skeletal muscle regeneration + 9
              negative regulation of skeletal muscle tissue regeneration + 1
              positive regulation of skeletal muscle tissue regeneration + 7
              regulation of skeletal muscle tissue regeneration + 11
              satellite cell activation involved in skeletal muscle regeneration + 5
              skeletal muscle regeneration at neuromuscular junction 0
              skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration + 5
paths to the root