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ONTOLOGY REPORT - ANNOTATIONS


Term:proteoglycan binding
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Accession:GO:0043394 term browser browse the term
Definition:Interacting selectively and non-covalently with a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans.


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proteoglycan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain enables IEA
ISO
GO_REF:0000107
(PMID:29030641)
Ensembl
RGD
PMID:29030641 GO_REF:0000107 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col5a1 collagen type V alpha 1 chain enables IEA
ISO
GO_REF:0000107
UniProtKB:Q00657 (PMID:9099729)
Ensembl
RGD
PMID:9099729 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a3 collagen type V alpha 3 chain IPI RGD PMID:15383532, PMID:15383532 RGD:5683638, RGD:5683638 NCBI chr 8:21,786,324...21,831,751
Ensembl chr 8:21,786,324...21,831,668
JBrowse link
G Comp cartilage oligomeric matrix protein enables ISO (PMID:29030641) RGD PMID:29030641 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Ctsb cathepsin B enables ISO UniProtKB:Q05793 (PMID:22952693) RGD PMID:22952693 NCBI chr15:46,316,741...46,337,613
Ensembl chr15:46,316,741...46,337,612
JBrowse link
G Ctsk cathepsin K enables ISO UniProtKB:Q05793 (PMID:22952693) RGD PMID:22952693 NCBI chr 2:196,655,469...196,666,447
Ensembl chr 2:196,655,469...196,666,446
JBrowse link
G Ctsl cathepsin L enables ISO UniProtKB:Q05793 (PMID:22952693) RGD PMID:22952693 NCBI chr17:1,873,105...1,879,266
Ensembl chr17:1,872,848...1,879,279
JBrowse link
G Ctss cathepsin S enables ISO
IEA
UniProtKB:Q05793 (PMID:22952693)
GO_REF:0000107
RGD
Ensembl
PMID:22952693 GO_REF:0000107 NCBI chr 2:197,655,780...197,679,768
Ensembl chr 2:197,655,786...197,679,458
JBrowse link
G Fn1 fibronectin 1 enables IEA
ISO
IBA
GO_REF:0000107
(PMID:29030641)
PMID:21873635
Ensembl
RGD
PMID:29030641, PMID:21873635, PMID:21873635 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Mfn2 mitofusin 2 IPI RGD PMID:25151458 RGD:13204806 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Nid1 nidogen 1 enables ISO
IEA
UniProtKB:Q05793 (PMID:22952693)
GO_REF:0000107
RGD
Ensembl
PMID:22952693 GO_REF:0000107 NCBI chr17:90,553,161...90,627,133
Ensembl chr17:90,553,394...90,627,101
JBrowse link
G Ptn pleiotrophin enables IPI PMID:27671118 RGD
UniProt
PMID:8702927, PMID:27671118, PMID:27671118 RGD:9589111, RGD:14397577, RGD:14397577 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Slit2 slit guidance ligand 2 enables ISO UniProtKB:P35053 (PMID:11375980) RGD PMID:11375980 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
chondroitin sulfate proteoglycan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptn pleiotrophin IPI RGD PMID:20369290 RGD:9831444 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Ptprf protein tyrosine phosphatase, receptor type, F enables IEA
ISO
GO_REF:0000107
PR:Q62059 (MGI:5294249|PMID:21976490)
Ensembl
RGD
PMID:21976490 GO_REF:0000107 MGI:5294249 NCBI chr 5:137,036,936...137,112,930
Ensembl chr 5:137,036,935...137,112,927
JBrowse link
G Sema5a semaphorin 5A enables IMP PMID:15603739 UniProt PMID:15603739, PMID:15603739 RGD:8553809, RGD:8553809 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
heparan sulfate proteoglycan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrn agrin enables ISS
ISO
GO_REF:0000024
(MGI:5486565|PMID:12773545)
UniProt
RGD
PMID:12773545 GO_REF:0000024 MGI:5486565 NCBI chr 5:173,589,910...173,622,813
Ensembl chr 5:173,589,819...173,622,645
JBrowse link
G Apoe apolipoprotein E enables ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23676495), (PMID:9488694)
(MGI:5514108|PMID:23676495)
UniProt
Ensembl
RGD
PMID:9488694 PMID:23676495 GO_REF:0000024 GO_REF:0000107 MGI:5514108 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G App amyloid beta precursor protein enables ISO (PMID:21289173) RGD PMID:21289173 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 ISO UniProtKB:A2ASQ1 (MGI:4352602|PMID:19376779) RGD PMID:19376779 MGI:4352602 NCBI chr 1:81,852,423...81,881,565
Ensembl chr 1:81,852,429...81,881,549
JBrowse link
G Cfh complement factor H enables ISO (PMID:22471560) RGD PMID:22471560 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Comp cartilage oligomeric matrix protein enables IEA
ISO
GO_REF:0000107
(PMID:17588949)
Ensembl
RGD
PMID:17588949 GO_REF:0000107 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Fbln7 fibulin 7 ISO
IEA
(MGI:6279558|PMID:29730503)
GO_REF:0000107
RGD
Ensembl
PMID:29730503 GO_REF:0000107 MGI:6279558 NCBI chr 3:121,407,981...121,441,660
Ensembl chr 3:121,408,146...121,440,787
JBrowse link
G Fst follistatin IDA RGD PMID:12867435 RGD:1601260 NCBI chr 2:46,537,589...46,544,813
Ensembl chr 2:46,538,700...46,544,457
JBrowse link
G Hpse2 heparanase 2 (inactive) enables ISO (PMID:20576607) RGD PMID:20576607 NCBI chr 1:262,020,903...263,138,299 JBrowse link
G Hrg histidine-rich glycoprotein enables IEA
ISO
ISS
GO_REF:0000107
(PMID:15138272), (PMID:16436387)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15138272 PMID:16436387 GO_REF:0000024 GO_REF:0000107 NCBI chr11:81,621,274...81,639,938
Ensembl chr11:81,621,283...81,639,952
JBrowse link
G Itgam integrin subunit alpha M ISO (MGI:67785|PMID:8043862) RGD PMID:8043862 MGI:67785 NCBI chr 1:199,495,312...199,545,738
Ensembl chr 1:199,495,298...199,623,960
JBrowse link
G Lipc lipase C, hepatic type IMP RGD PMID:15102889 RGD:1580511 NCBI chr 8:77,272,582...77,398,485
Ensembl chr 8:77,272,570...77,398,248
JBrowse link
G LOC681544 similar to histidine-rich glycoprotein enables ISS GO_REF:0000024 UniProt GO_REF:0000024 Ensembl chr11:81,621,283...81,639,952 JBrowse link
G Lpl lipoprotein lipase enables ISS
ISO
GO_REF:0000024
(PMID:11342582)
UniProt
RGD
PMID:11342582 GO_REF:0000024 NCBI chr16:22,537,687...22,561,487
Ensembl chr16:22,537,056...22,561,496
JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 ISO (MGI:5515242|PMID:23911104) RGD PMID:23911104 MGI:5515242 NCBI chr 4:110,699,577...111,497,643
Ensembl chr 4:110,699,557...111,497,643
JBrowse link
G Pla2g2d phospholipase A2, group IID ISO (MGI:3851856|PMID:19564598) RGD PMID:19564598 MGI:3851856 NCBI chr 5:157,222,636...157,228,795
Ensembl chr 5:157,222,636...157,228,791
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C ISO (MGI:67785|PMID:8043862) RGD PMID:8043862 MGI:67785 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939
JBrowse link
G Sema5a semaphorin 5A enables IMP PMID:15603739 UniProt PMID:15603739, PMID:15603739 RGD:8553809, RGD:8553809 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
G Slit1 slit guidance ligand 1 IDA RGD PMID:10364234 RGD:68764 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Slit2 slit guidance ligand 2 IDA RGD PMID:10364234 RGD:68764 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
syndecan binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin ISO (MGI:3525426|PMID:15381701) RGD PMID:15381701 MGI:3525426 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Gpnmb glycoprotein nmb enables ISO UniProtKB:P31431 (PMID:19350579) RGD PMID:19350579 NCBI chr 4:78,694,447...78,715,685
Ensembl chr 4:78,694,447...78,715,683
JBrowse link
G Hpse heparanase enables IEA
ISO
GO_REF:0000107
(PMID:15292202)
Ensembl
RGD
PMID:15292202 GO_REF:0000107 NCBI chr14:10,534,358...10,576,686
Ensembl chr14:10,534,423...10,575,224
JBrowse link
G Nf1 neurofibromin 1 IPI RGD PMID:11356864, PMID:11356864 RGD:1599282, RGD:1599282 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Ptn pleiotrophin enables IPI PMID:9817766 UniProt PMID:9817766, PMID:9817766 RGD:14397563, RGD:14397563 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Sdcbp syndecan binding protein enables IPI
IBA
ISO
PMID:21873635
UniProtKB:P34741 (PMID:18256285), (PMID:22660413)
RGD PMID:18256285 PMID:22660413, PMID:11152476, PMID:21873635, PMID:21873635 RGD:633988, RGD:13792537, RGD:13792537 NCBI chr 5:19,471,664...19,498,499
Ensembl chr 5:19,471,664...19,498,485
JBrowse link
G Sema5a semaphorin 5A enables IPI PMID:15603739 UniProt PMID:15603739, PMID:15603739 RGD:8553809, RGD:8553809 NCBI chr 2:85,377,318...85,808,970
Ensembl chr 2:85,377,318...85,808,970
JBrowse link
G Tnc tenascin C enables ISO (PMID:8769660) RGD PMID:8769660 NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  molecular_function 20509
    binding 17316
      carbohydrate derivative binding 2246
        proteoglycan binding 39
          chondroitin sulfate proteoglycan binding 3
          heparan sulfate proteoglycan binding 21
          syndecan binding 8
paths to the root