ONTOLOGY REPORT - ANNOTATIONS
Term: response to dsRNA
Accession: GO:0043331
browse the term
Definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus.
Synonyms: exact_synonym: response to double-stranded RNA
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Peli1
pellino E3 ubiquitin protein ligase 1
acts_upstream_of_or_within
ISO
MGI:4361448 (MGI:4359971|PMID:19734906)
RGD
PMID:19734906
MGI:4359971
NCBI chr14:95,254,274...95,309,168
Ensembl chr14:95,254,589...95,308,285
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Pmaip1
phorbol-12-myristate-13-acetate-induced protein 1
involved_in
ISO
(PMID:15705586)
RGD
PMID:15705586
NCBI chr18:59,986,187...59,990,174
Ensembl chr18:59,986,017...59,992,429
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Tlr3
toll-like receptor 3
IDA
poly(I:C) - a synthetic analog of double-stranded RNA, a molecular pattern associated with viral infection
RGD
PMID:16973131
RGD:1643119
NCBI chr16:46,821,980...46,837,900
Ensembl chr16:46,822,039...46,836,545
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Gria1
glutamate ionotropic receptor AMPA type subunit 1
IEP
miR-132
RGD
PMID:19958814
RGD:2325933
NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
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Grin2a
glutamate ionotropic receptor NMDA type subunit 2A
IEP
miR-132
RGD
PMID:19958814
RGD:2325933
NCBI chr10:5,630,684...6,043,341
Ensembl chr10:5,631,369...6,044,637
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Grin2b
glutamate ionotropic receptor NMDA type subunit 2B
IEP
miR-132
RGD
PMID:19958814
RGD:2325933
NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
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Ifnb1
interferon beta 1
acts_upstream_of_or_within involved_in
ISO
(PMID:18596219) (MGI:3814787|PMID:18596219)
RGD
PMID:18596219
MGI:3814787
NCBI chr 5:103,020,969...103,021,523
Ensembl chr 5:103,020,969...103,021,523
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Nfkb1
nuclear factor kappa B subunit 1
acts_upstream_of_or_within
ISO
MGI:1857225 (MGI:5604160|PMID:24114535)
RGD
PMID:24114535
MGI:5604160
NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
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P2rx7
purinergic receptor P2X 7
acts_upstream_of_or_within
ISO
MGI:2386080 (MGI:5604160|PMID:24114535)
RGD
PMID:24114535
MGI:5604160
NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
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Pde12
phosphodiesterase 12
involved_in
IEA ISO
GO_REF:0000107 (PMID:15231837)
Ensembl RGD
PMID:15231837
GO_REF:0000107
NCBI chr16:1,915,386...1,925,427
Ensembl chr16:1,915,386...1,925,887
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Riok3
RIO kinase 3
involved_in
ISO
(PMID:24807708)
RGD
PMID:24807708
NCBI chr18:3,327,776...3,353,350
Ensembl chr18:3,327,776...3,353,343
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Cav1
caveolin 1
involved_in
ISO
(PMID:25204797)
RGD
PMID:25204797
NCBI chr 4:45,640,624...45,673,708
Ensembl chr 4:45,634,918...45,673,705
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Cgas
cyclic GMP-AMP synthase
involved_in
ISO IBA
(MGI:5487472|PMID:23258413), (MGI:5897489|PMID:28363908), (MGI:5897502|PMID:28214358), (MGI:5908326|PMID:24077100) PMID:21873635
RGD
PMID:23258413 PMID:24077100 PMID:28214358 PMID:28363908 PMID:21873635
MGI:5487472 MGI:5897489 MGI:5897502 MGI:5908326 , RGD:13792537
NCBI chr 8:79,292,282...79,306,998
Ensembl chr 8:79,294,511...79,305,496
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Ciita
class II, major histocompatibility complex, transactivator
IEP
RGD
PMID:10051633
RGD:7242894
NCBI chr10:5,139,947...5,187,493
Ensembl chr10:5,140,178...5,187,440
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Colec12
collectin sub-family member 12
involved_in NOT|involved_in
ISO
(PMID:25204797)
RGD
PMID:25204797
NCBI chr18:732,950...920,620
Ensembl chr18:732,950...920,618
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Dhx9
DExH-box helicase 9
involved_in
ISO
(PMID:21957149)
RGD
PMID:21957149
NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
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Flot1
flotillin 1
involved_in
ISO
(PMID:25204797)
RGD
PMID:25204797
NCBI chr20:2,917,864...2,927,993
Ensembl chr20:2,917,137...2,927,978
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Ifih1
interferon induced with helicase C domain 1
involved_in
ISO
(PMID:21957149)
RGD
PMID:21957149
NCBI chr 3:47,228,980...47,275,403
Ensembl chr 3:47,227,364...47,275,456
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Irf1
interferon regulatory factor 1
IEP
RGD
PMID:11694343
RGD:5128789
NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
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Irf3
interferon regulatory factor 3
IEP
RGD
PMID:18223009
RGD:5128810
NCBI chr 1:95,479,966...95,484,926
Ensembl chr 1:95,479,821...95,484,935
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Mavs
mitochondrial antiviral signaling protein
involved_in
ISS ISO
GO_REF:0000024 (PMID:16127453), (PMID:21957149)
UniProt RGD
PMID:16127453 PMID:21957149
GO_REF:0000024
NCBI chr 3:118,451,650...118,466,094
Ensembl chr 3:118,451,743...118,466,094
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Mul1
mitochondrial E3 ubiquitin protein ligase 1
involved_in
ISO
(PMID:23399697)
RGD
PMID:23399697
NCBI chr 5:150,652,812...150,661,863
Ensembl chr 5:150,652,812...150,661,863
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Pqbp1
polyglutamine binding protein 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:26046437)
UniProt RGD
PMID:26046437
GO_REF:0000024
NCBI chr X:14,603,516...14,608,091
Ensembl chr X:14,603,539...14,608,087
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Ralb
RAS like proto-oncogene B
involved_in
ISO IEA
(PMID:24056301) GO_REF:0000107
RGD Ensembl
PMID:24056301
GO_REF:0000107
NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
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Rig1
RNA sensor RIG-1
involved_in
ISO
(PMID:21957149)
RGD
PMID:21957149
NCBI chr 5:55,321,229...55,369,947
Ensembl chr 5:55,321,235...55,370,819
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Sting1
stimulator of interferon response cGAMP interactor 1
involved_in
ISO
(PMID:18818105)
RGD
PMID:18818105
NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
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Tlr3
toll-like receptor 3
IEP IMP
RGD
PMID:20937230 PMID:15920723
RGD:5128701 , RGD:2301737
NCBI chr16:46,821,980...46,837,900
Ensembl chr16:46,822,039...46,836,545
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Zc3hav1
zinc finger CCCH-type containing, antiviral 1
acts_upstream_of_or_within
ISO
(MGI:4868308|PMID:21102435)
RGD
PMID:21102435
MGI:4868308
NCBI chr 4:67,012,151...67,062,406
Ensembl chr 4:67,012,185...67,062,428
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Zcchc3
zinc finger CCHC-type containing 3
involved_in
ISO IBA
(PMID:30193849) (MGI:6271678|PMID:30193849) PMID:21873635
RGD
PMID:30193849 PMID:21873635
MGI:6271678 , RGD:13792537
NCBI chr 3:140,872,460...140,875,851
Ensembl chr 3:140,872,460...140,882,408
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Npm1
nucleophosmin 1
involved_in
ISO ISS
(PMID:12882984) GO_REF:0000024
RGD UniProt
PMID:12882984
GO_REF:0000024
NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
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Card9
caspase recruitment domain family, member 9
acts_upstream_of_or_within
ISO
MGI:3698412 (MGI:3697751|PMID:17187069)
RGD
PMID:17187069
MGI:3697751
NCBI chr 3:9,171,814...9,180,310
Ensembl chr 3:9,171,815...9,180,237
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Ddx1
DEAD-box helicase 1
acts_upstream_of_or_within
ISO
(MGI:5050760|PMID:21703541)
RGD
PMID:21703541
MGI:5050760
NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365
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Ddx21
DExD-box helicase 21
acts_upstream_of_or_within
ISO
(MGI:5050760|PMID:21703541)
RGD
PMID:21703541
MGI:5050760
NCBI chr20:30,534,319...30,554,513
Ensembl chr20:30,534,319...30,554,543
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Dhx36
DEAH-box helicase 36
acts_upstream_of_or_within
ISO
(MGI:5050760|PMID:21703541)
RGD
PMID:21703541
MGI:5050760
NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
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Eif2ak2
eukaryotic translation initiation factor 2-alpha kinase 2
IEP
RGD
PMID:15920723
RGD:2301737
NCBI chr 6:16,189,000...16,224,972
Ensembl chr 6:16,188,979...16,224,971
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Ifna4
interferon, alpha 4
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,069,483...103,070,052
Ensembl chr 5:103,069,483...103,070,052
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Ifna5
interferon, alpha 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,187,852...103,188,430
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Ifnb1
interferon beta 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (PMID:21266579)
RGD
PMID:21266579 PMID:21873635
RGD:13792537
NCBI chr 5:103,020,969...103,021,523
Ensembl chr 5:103,020,969...103,021,523
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Ifne
interferon, epsilon
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,538,001...103,627,561
Ensembl chr 5:103,569,675...103,572,256
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Ifnk
interferon kappa
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:49,732,073...49,734,281
Ensembl chr 5:49,732,073...49,734,281
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Irak3
interleukin-1 receptor-associated kinase 3
involved_in
ISO
(MGI:2183694|PMID:12150927)
RGD
PMID:12150927
MGI:2183694
NCBI chr 7:55,653,949...55,714,371
Ensembl chr 7:55,653,962...55,713,121
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Irf3
interferon regulatory factor 3
acts_upstream_of_or_within
ISO
(MGI:2669022|PMID:12855817), (MGI:2670551|PMID:12872135)
RGD
PMID:12855817 PMID:12872135
MGI:2669022 MGI:2670551
NCBI chr 1:95,479,966...95,484,926
Ensembl chr 1:95,479,821...95,484,935
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Kcnj8
potassium inwardly-rectifying channel, subfamily J, member 8
acts_upstream_of_or_within
ISO
MGI:3720053 (MGI:3761841|PMID:18026101)
RGD
PMID:18026101
MGI:3761841
NCBI chr 4:175,508,908...175,515,829
Ensembl chr 4:175,508,912...175,515,603
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LOC100911527
interferon alpha-12-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,524,733...103,525,302
Ensembl chr 5:103,524,733...103,525,302
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LOC120103163
interferon alpha-12-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,494,442...103,495,077
Ensembl chr 5:103,494,448...103,495,002
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LOC120103164
interferon alpha-12-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,509,610...103,510,260
Ensembl chr 5:103,509,616...103,510,170
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Mapk1
mitogen activated protein kinase 1
acts_upstream_of_or_within
ISO
(MGI:2670551|PMID:12872135)
RGD
PMID:12872135
MGI:2670551
NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616
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Mapk3
mitogen activated protein kinase 3
acts_upstream_of_or_within
ISO
(MGI:2670551|PMID:12872135)
RGD
PMID:12872135
MGI:2670551
NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
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Nfkbia
NFKB inhibitor alpha
acts_upstream_of_or_within
ISO
(MGI:2670551|PMID:12872135)
RGD
PMID:12872135
MGI:2670551
NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
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Nod2
nucleotide-binding oligomerization domain containing 2
acts_upstream_of_or_within
ISO
MGI:3529594 (MGI:3528786|PMID:15692051)
RGD
PMID:15692051
MGI:3528786
NCBI chr19:18,379,720...18,422,817
Ensembl chr19:18,382,439...18,417,177
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Plin3
perilipin 3
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 9:1,111,178...1,123,117
Ensembl chr 9:1,102,366...1,123,147
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Rftn1
raftlin lipid raft linker 1
acts_upstream_of_or_within
ISO
(PMID:21266579)
RGD
PMID:21266579
NCBI chr 9:10,804,611...11,002,084
Ensembl chr 9:10,804,611...11,002,084
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Rftn2
raftlin family member 2
acts_upstream_of_or_within
ISO
(MGI:4947923|PMID:21266579)
RGD
PMID:21266579
MGI:4947923
NCBI chr 9:56,651,617...56,707,830
Ensembl chr 9:56,630,460...56,707,810
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RGD1560539
similar to interferon alpha 8/6 precursor; IFNa8/6 (B6)
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:103,476,362...103,477,211
Ensembl chr 5:103,476,657...103,477,211
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Rig1
RNA sensor RIG-1
acts_upstream_of_or_within
ISO
(MGI:5050760|PMID:21703541)
RGD
PMID:21703541
MGI:5050760
NCBI chr 5:55,321,229...55,369,947
Ensembl chr 5:55,321,235...55,370,819
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Ripk2
receptor-interacting serine-threonine kinase 2
acts_upstream_of_or_within
ISO
MGI:2660793 (MGI:2176422|PMID:11894098)
RGD
PMID:11894098
MGI:2176422
NCBI chr 5:29,630,806...29,662,804
Ensembl chr 5:29,631,570...29,662,657
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Slc3a2
solute carrier family 3 member 2
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:21266579) GO_REF:0000107
RGD Ensembl
PMID:21266579
GO_REF:0000107
NCBI chr 1:205,604,468...205,618,931
Ensembl chr 1:205,604,468...205,618,931
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Stat1
signal transducer and activator of transcription 1
acts_upstream_of_or_within
ISO
(MGI:2670551|PMID:12872135)
RGD
PMID:12872135
MGI:2670551
NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540
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Ticam1
TIR domain containing adaptor molecule 1
acts_upstream_of_or_within involved_in
ISO IEA
MGI:2679794|MGI:3029019 (MGI:2669022|PMID:12855817), (MGI:2670551|PMID:12872135), (MGI:5050760|PMID:21703541) GO_REF:0000104 (PMID:21266579)
RGD UniProt
PMID:12855817 PMID:12872135 PMID:21266579 PMID:21703541
GO_REF:0000104 MGI:2669022 MGI:2670551 MGI:5050760
NCBI chr 9:1,102,559...1,115,573
Ensembl chr 9:1,102,366...1,123,147
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Tlr3
toll-like receptor 3
acts_upstream_of_or_within
ISO
MGI:3690535 (MGI:2669022|PMID:12855817) (PMID:21266579)
RGD
PMID:12855817 PMID:21266579
MGI:2669022
NCBI chr16:46,821,980...46,837,900
Ensembl chr16:46,822,039...46,836,545
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