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ONTOLOGY REPORT - ANNOTATIONS


Term:response to dsRNA
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Accession:GO:0043331 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus.
Synonyms:exact_synonym: response to double-stranded RNA


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response to dsRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Peli1 pellino E3 ubiquitin protein ligase 1 ISO MGI:4361448 (MGI:4359971|PMID:19734906) RGD PMID:19734906 MGI:4359971 NCBI chr14:106,008,086...106,062,566
Ensembl chr14:106,008,086...106,061,641
JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 ISO (PMID:15705586) RGD PMID:15705586 NCBI chr18:62,159,128...62,179,635
Ensembl chr18:62,174,670...62,181,102
JBrowse link
G Tlr3 toll-like receptor 3 IDA poly(I:C) - a synthetic analog of double-stranded RNA, a molecular pattern associated with viral infection RGD PMID:16973131 RGD:1643119 NCBI chr16:50,016,466...50,031,011
Ensembl chr16:50,016,857...50,031,214
JBrowse link
cellular response to dsRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 IEP miR-132 RGD PMID:19958814 RGD:2325933 NCBI chr10:42,441,723...42,760,200
Ensembl chr10:42,614,713...42,760,200
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IEP miR-132 RGD PMID:19958814 RGD:2325933 NCBI chr10:5,707,806...6,123,568
Ensembl chr10:5,930,298...6,119,990
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B IEP miR-132 RGD PMID:19958814 RGD:2325933 NCBI chr 4:169,541,620...170,000,216
Ensembl chr 4:169,560,387...169,999,873
JBrowse link
G Ifnb1 interferon beta 1 ISO (PMID:18596219) RGD PMID:18596219 NCBI chr 5:106,865,192...106,865,746
Ensembl chr 5:106,865,192...106,865,746
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 IEA
ISO
GO_REF:0000107
MGI:1857225 (MGI:5604160|PMID:24114535)
Ensembl
RGD
PMID:24114535 GO_REF:0000107 MGI:5604160 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
G P2rx7 purinergic receptor P2X 7 ISO MGI:2386080 (MGI:5604160|PMID:24114535) RGD PMID:24114535 MGI:5604160 NCBI chr12:39,353,613...39,396,042
Ensembl chr12:39,353,613...39,396,042
JBrowse link
G Pde12 phosphodiesterase 12 IEA
ISO
GO_REF:0000107
(PMID:15231837)
Ensembl
RGD
PMID:15231837 GO_REF:0000107 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Riok3 RIO kinase 3 ISO (PMID:24807708) RGD PMID:24807708 NCBI chr18:3,565,166...3,590,739
Ensembl chr18:3,565,166...3,590,739
JBrowse link
cellular response to exogenous dsRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 IEA
ISO
GO_REF:0000107
(PMID:25204797)
Ensembl
RGD
PMID:25204797 GO_REF:0000107 NCBI chr 4:44,597,123...44,630,206
Ensembl chr 4:44,597,123...44,630,200
JBrowse link
G Cgas cyclic GMP-AMP synthase ISO
IBA
(PMID:23258413), (PMID:24077100), (PMID:28214358), (PMID:28363908)
(MGI:5487472|PMID:23258413), (MGI:5897489|PMID:28363908), (MGI:5897502|PMID:28214358), (MGI:5908326|PMID:24077100)
PMID:21873635
RGD PMID:23258413 PMID:24077100 PMID:28214358 PMID:28363908, PMID:21873635 MGI:5487472 MGI:5897489 MGI:5897502 MGI:5908326, RGD:13792537 NCBI chr 8:85,789,515...85,804,008
Ensembl chr 8:85,789,763...85,803,433
JBrowse link
G Ciita class II, major histocompatibility complex, transactivator IEP RGD PMID:10051633 RGD:7242894 NCBI chr10:5,212,621...5,260,641
Ensembl chr10:5,213,350...5,260,608
JBrowse link
G Colec12 collectin sub-family member 12 NOT ISO (PMID:25204797) RGD PMID:25204797 NCBI chr18:867,048...1,054,047
Ensembl chr18:867,048...1,052,606
JBrowse link
G Ddx58 DEXD/H-box helicase 58 ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 5:56,486,584...56,536,898
Ensembl chr 5:56,500,734...56,536,772
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:21957149) RGD PMID:21957149 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Flot1 flotillin 1 ISO (PMID:25204797) RGD PMID:25204797 NCBI chr20:3,427,890...3,438,418
Ensembl chr20:3,427,880...3,438,396
JBrowse link
G Ifih1 interferon induced with helicase C domain 1 ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 3:48,557,696...48,604,097
Ensembl chr 3:48,557,696...48,604,097
JBrowse link
G Ifit1bl interferon-induced protein with tetratricopeptide repeats 1B-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:252,914,684...252,959,348
Ensembl chr 1:252,914,684...252,922,486
JBrowse link
G Irf1 interferon regulatory factor 1 IEP RGD PMID:11694343 RGD:5128789 NCBI chr10:39,109,530...39,116,532
Ensembl chr10:39,109,522...39,116,531
JBrowse link
G Irf3 interferon regulatory factor 3 IEP RGD PMID:18223009 RGD:5128810 NCBI chr 1:100,992,244...100,997,202
Ensembl chr 1:100,992,405...100,997,198
JBrowse link
G Mavs mitochondrial antiviral signaling protein ISS
ISO
GO_REF:0000024
(PMID:16127453), (PMID:21957149)
UniProt
RGD
PMID:16127453 PMID:21957149 GO_REF:0000024 NCBI chr 3:123,776,147...123,790,572
Ensembl chr 3:123,776,181...123,790,567
JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 ISO (PMID:23399697) RGD PMID:23399697 NCBI chr 5:156,855,105...156,864,517
Ensembl chr 5:156,850,206...156,864,517
JBrowse link
G Pqbp1 polyglutamine binding protein 1 ISO
IEA
ISS
(PMID:26046437)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26046437 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:15,448,570...15,453,130
Ensembl chr  X:15,348,138...15,453,130
JBrowse link
G Ralb RAS like proto-oncogene B IEA
ISO
GO_REF:0000107
(PMID:24056301)
Ensembl
RGD
PMID:24056301 GO_REF:0000107 NCBI chr13:35,494,716...35,531,503
Ensembl chr13:35,494,721...35,511,020
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISO (PMID:18818105) RGD PMID:18818105 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
JBrowse link
G Tlr3 toll-like receptor 3 IEP
IMP
RGD PMID:20937230, PMID:15920723 RGD:5128701, RGD:2301737 NCBI chr16:50,016,466...50,031,011
Ensembl chr16:50,016,857...50,031,214
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO (MGI:4868308|PMID:21102435) RGD PMID:21102435 MGI:4868308 NCBI chr 4:66,012,111...66,062,160
Ensembl chr 4:66,011,915...66,062,089
JBrowse link
G Zcchc3 zinc finger CCHC-type containing 3 ISO (PMID:30193849)
(MGI:6271678|PMID:30193849)
RGD PMID:30193849 MGI:6271678 NCBI chr 3:147,877,321...147,881,434
Ensembl chr 3:147,878,936...147,880,138
JBrowse link
regulation of eIF2 alpha phosphorylation by dsRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 ISO
ISS
(PMID:12882984)
GO_REF:0000024
RGD
UniProt
PMID:12882984 GO_REF:0000024 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
response to exogenous dsRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07049134.3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:107,355,354...107,357,276 JBrowse link
G Card9 caspase recruitment domain family, member 9 ISO MGI:3698412 (MGI:3697751|PMID:17187069) RGD PMID:17187069 MGI:3697751 NCBI chr 3:3,798,346...3,806,841
Ensembl chr 3:3,798,347...3,806,713
JBrowse link
G Ddx1 DEAD-box helicase 1 ISO (MGI:5050760|PMID:21703541) RGD PMID:21703541 MGI:5050760 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Ddx21 DExD-box helicase 21 ISO (MGI:5050760|PMID:21703541) RGD PMID:21703541 MGI:5050760 NCBI chr20:32,213,147...32,232,632
Ensembl chr20:32,213,148...32,232,632
JBrowse link
G Ddx58 DEXD/H-box helicase 58 ISO (MGI:5050760|PMID:21703541) RGD PMID:21703541 MGI:5050760 NCBI chr 5:56,486,584...56,536,898
Ensembl chr 5:56,500,734...56,536,772
JBrowse link
G Dhx36 DEAH-box helicase 36 ISO (MGI:5050760|PMID:21703541) RGD PMID:21703541 MGI:5050760 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 IEP RGD PMID:15920723 RGD:2301737 NCBI chr 6:1,428,845...1,466,193
Ensembl chr 6:1,428,834...1,466,201
JBrowse link
G Ifna1 interferon, alpha 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:106,951,822...106,952,908
Ensembl chr 5:106,952,082...106,952,792
JBrowse link
G Ifna11 interferon alpha family, gene 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,504,741...107,505,783
Ensembl chr 5:107,504,879...107,505,454
JBrowse link
G Ifna16l1 interferon, alpha 16-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,446,898...107,447,636
Ensembl chr 5:107,447,061...107,447,636
JBrowse link
G Ifna2 interferon alpha 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,416,117...107,416,695
Ensembl chr 5:107,416,117...107,416,695
JBrowse link
G Ifna4 interferon, alpha 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:106,922,563...106,923,132
Ensembl chr 5:106,922,563...106,923,132
JBrowse link
G Ifna5 interferon, alpha 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,039,347...107,039,925
Ensembl chr 5:107,039,347...107,039,925
JBrowse link
G Ifnb1 interferon beta 1 ISO
IBA
(PMID:21266579)
PMID:21873635
RGD PMID:21266579, PMID:21873635 RGD:13792537 NCBI chr 5:106,865,192...106,865,746
Ensembl chr 5:106,865,192...106,865,746
JBrowse link
G Ifne interferon, epsilon IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,232,651...107,235,943
Ensembl chr 5:107,233,230...107,233,799
JBrowse link
G Ifnk interferon kappa IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:50,631,217...50,634,142
Ensembl chr 5:50,631,217...50,634,142
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 ISO (MGI:2183694|PMID:12150927) RGD PMID:12150927 MGI:2183694 NCBI chr 7:64,922,830...64,982,224
Ensembl chr 7:64,923,615...64,982,281
JBrowse link
G Irf3 interferon regulatory factor 3 ISO (MGI:2669022|PMID:12855817), (MGI:2670551|PMID:12872135) RGD PMID:12855817 PMID:12872135 MGI:2669022 MGI:2670551 NCBI chr 1:100,992,244...100,997,202
Ensembl chr 1:100,992,405...100,997,198
JBrowse link
G Kcnj8 potassium inwardly-rectifying channel, subfamily J, member 8 ISO MGI:3720053 (MGI:3761841|PMID:18026101) RGD PMID:18026101 MGI:3761841 NCBI chr 4:176,783,287...176,789,143
Ensembl chr 4:176,782,498...176,789,304
JBrowse link
G LOC100911527 interferon alpha-12-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:87,328,395...87,328,946
Ensembl chr 5:87,354,042...87,354,596
JBrowse link
G LOC100912314 interferon alpha-1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,369,378...107,370,443
Ensembl chr 5:107,504,879...107,505,454
Ensembl chr 5:107,504,879...107,505,454
JBrowse link
G LOC100912356 interferon alpha-1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:107,387,566...107,388,182
Ensembl chr 5:107,387,613...107,388,182
JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO (MGI:2670551|PMID:12872135) RGD PMID:12872135 MGI:2670551 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO (MGI:2670551|PMID:12872135) RGD PMID:12872135 MGI:2670551 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Nfkbia NFKB inhibitor alpha ISO (MGI:2670551|PMID:12872135) RGD PMID:12872135 MGI:2670551 NCBI chr 6:76,267,227...76,270,457
Ensembl chr 6:76,267,228...76,270,457
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO MGI:3529594 (MGI:3528786|PMID:15692051) RGD PMID:15692051 MGI:3528786 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Rftn1 raftlin lipid raft linker 1 ISO (PMID:21266579) RGD PMID:21266579 NCBI chr 9:12,740,885...12,942,358
Ensembl chr 9:12,740,885...12,942,358
JBrowse link
G Rftn2 raftlin family member 2 ISO (MGI:4947923|PMID:21266579) RGD PMID:21266579 MGI:4947923 NCBI chr 9:61,754,859...61,810,992
Ensembl chr 9:61,756,428...61,810,417
JBrowse link
G RGD1560539 similar to interferon alpha 8/6 precursor; IFNa8/6 (B6) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:87,353,750...87,354,699
Ensembl chr 5:87,354,042...87,354,596
JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 ISO MGI:2660793 (MGI:2176422|PMID:11894098) RGD PMID:11894098 MGI:2176422 NCBI chr 5:29,838,713...29,870,390
Ensembl chr 5:29,838,747...29,870,735
JBrowse link
G Slc3a2 solute carrier family 3 member 2 ISO (PMID:21266579) RGD PMID:21266579 NCBI chr 1:224,906,566...224,921,029
Ensembl chr 1:224,906,554...224,921,092
JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO (MGI:2670551|PMID:12872135) RGD PMID:12872135 MGI:2670551 NCBI chr 9:54,287,540...54,327,958
Ensembl chr 9:54,287,541...54,484,533
JBrowse link
G Ticam1 toll-like receptor adaptor molecule 1 ISO (PMID:21266579)
MGI:2679794|MGI:3029019 (MGI:2669022|PMID:12855817), (MGI:2670551|PMID:12872135), (MGI:5050760|PMID:21703541)
RGD PMID:12855817 PMID:12872135 PMID:21266579 PMID:21703541 MGI:2669022 MGI:2670551 MGI:5050760 NCBI chr 9:10,780,185...10,790,280 JBrowse link
G Tlr3 toll-like receptor 3 ISO (PMID:21266579)
MGI:3690535 (MGI:2669022|PMID:12855817)
RGD PMID:12855817 PMID:21266579 MGI:2669022 NCBI chr16:50,016,466...50,031,011
Ensembl chr16:50,016,857...50,031,214
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20044
    response to stimulus 10558
      response to chemical 6329
        response to nitrogen compound 1555
          response to dsRNA 60
            cellular response to dsRNA + 28
            response to exogenous dsRNA + 50
Path 2
Term Annotations click to browse term
  biological_process 20044
    response to stimulus 10558
      response to chemical 6329
        response to organic substance 3873
          response to organic cyclic compound 1454
            response to dsRNA 60
              cellular response to dsRNA + 28
              response to exogenous dsRNA + 50
paths to the root