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ONTOLOGY REPORT - ANNOTATIONS


Term:glycosphingolipid binding
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Accession:GO:0043208 term browser browse the term
Definition:Interacting selectively and non-covalently with glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide.


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glycosphingolipid binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cel carboxyl ester lipase IDA RGD PMID:15296737 RGD:2313559 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Il2 interleukin 2 IDA binds gangliosides GM1, GD1a, GD1b and GT1b with increased binding as the carbohydrate side chains increase in complexity RGD PMID:6609839 RGD:1600093 NCBI chr 2:123,847,150...123,851,854
Ensembl chr 2:123,847,150...123,851,854
JBrowse link
G Lama1 laminin subunit alpha 1 ISO (MGI:MGI:3836888|PMID:19118221) RGD PMID:19118221 MGI:MGI:3836888 NCBI chr 9:115,916,907...116,042,123
Ensembl chr 9:115,916,907...116,042,123
JBrowse link
G Lamb1 laminin subunit beta 1 ISO (MGI:MGI:3836888|PMID:19118221) RGD PMID:19118221 MGI:MGI:3836888 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
JBrowse link
G Lamc1 laminin subunit gamma 1 ISO (MGI:MGI:3836888|PMID:19118221) RGD PMID:19118221 MGI:MGI:3836888 NCBI chr13:70,656,727...70,783,515
Ensembl chr13:70,658,707...70,783,515
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase IPI RGD PMID:8106508 RGD:2303724 NCBI chr 5:16,526,058...16,642,648
Ensembl chr 5:16,526,058...16,642,648
JBrowse link
ganglioside binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clip3 CAP-GLY domain containing linker protein 3 ISO
ISS
(PMID:20052288)
GO_REF:0000024
RGD
UniProt
PMID:20052288 GO_REF:0000024 NCBI chr 1:88,750,453...88,766,453
Ensembl chr 1:90,962,707...90,978,907
JBrowse link
G LOC108348122 CAP-Gly domain-containing linker protein 3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:90,962,921...90,978,946
Ensembl chr 1:90,962,707...90,978,907
JBrowse link
ganglioside GM1 binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epdr1 ependymin related 1 ISO
IEA
(PMID:30729188)
GO_REF:0000107
RGD
Ensembl
PMID:30729188 GO_REF:0000107 NCBI chr17:47,397,558...47,422,183
Ensembl chr17:47,397,558...47,422,182
JBrowse link
G Psap prosaposin IEA
ISO
GO_REF:0000107
(PMID:1454804)
Ensembl
RGD
PMID:1454804 GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Rtn4r reticulon 4 receptor ISO
ISS
(PMID:18411262)
GO_REF:0000024
RGD
UniProt
PMID:18411262 GO_REF:0000024 NCBI chr11:86,992,665...87,017,091
Ensembl chr11:86,992,399...87,017,115
JBrowse link
ganglioside GM2 binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psap prosaposin IEA
ISO
GO_REF:0000107
(PMID:1454804)
Ensembl
RGD
PMID:1454804 GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
ganglioside GM3 binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psap prosaposin IEA
ISO
GO_REF:0000107
(PMID:1454804)
Ensembl
RGD
PMID:1454804 GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
ganglioside GP1c binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psap prosaposin IEA
ISO
GO_REF:0000107
(PMID:1454804)
Ensembl
RGD
PMID:1454804 GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
ganglioside GT1b binding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mag myelin-associated glycoprotein IDA
ISS
ISO
PMID:8995428
GO_REF:0000024
(MGI:MGI:5822923|PMID:27922006)
UniProt
RGD
PMID:27922006, PMID:8995428 GO_REF:0000024, MGI:MGI:5822923, RGD:12050139 NCBI chr 1:89,345,325...89,360,905
Ensembl chr 1:89,345,429...89,360,733
JBrowse link
G Psap prosaposin IEA
ISO
GO_REF:0000107
(PMID:1454804)
Ensembl
RGD
PMID:1454804 GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Rtn4r reticulon 4 receptor ISO
ISS
(PMID:18411262)
GO_REF:0000024
RGD
UniProt
PMID:18411262 GO_REF:0000024 NCBI chr11:86,992,665...87,017,091
Ensembl chr11:86,992,399...87,017,115
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20467
    binding 17270
      lipid binding 806
        sphingolipid binding 29
          glycosphingolipid binding 12
            ganglioside binding + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.