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ONTOLOGY REPORT - ANNOTATIONS


Term:lysosomal lumen
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Accession:GO:0043202 term browser browse the term
Definition:The volume enclosed within the lysosomal membrane.


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lysosomal lumen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp2 acid phosphatase 2, lysosomal IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:80,020,346...80,030,365
Ensembl chr 3:80,021,440...80,030,363
JBrowse link
G Cubn cubilin IDA RGD PMID:15578272 RGD:2317835 NCBI chr17:80,584,921...80,807,181
Ensembl chr17:80,584,878...80,807,243
JBrowse link
G Epdr1 ependymin related 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:47,397,558...47,422,183
Ensembl chr17:47,397,558...47,422,182
JBrowse link
G Faslg Fas ligand IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Gba glucosylceramidase beta ISO (MGI:3773765|PMID:18022370) RGD PMID:18022370 MGI:3773765 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601
JBrowse link
G Neu1 neuraminidase 1 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:4,610,995...4,615,258
Ensembl chr20:4,610,995...4,615,247
JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 IDA PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr14:77,380,264...77,402,007
Ensembl chr14:77,380,262...77,401,996
JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 IDA PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr10:15,867,885...15,928,169
Ensembl chr10:15,867,887...15,928,169
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:56,364,586...56,406,381
Ensembl chr18:56,364,620...56,406,381
JBrowse link
G Plbd2 phospholipase B domain containing 2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:41,600,005...41,619,779
Ensembl chr12:41,600,005...41,619,186
JBrowse link
G Pld3 phospholipase D family, member 3 ISS
ISO
GO_REF:0000024
(PMID:30312375)
UniProt
RGD
PMID:30312375 GO_REF:0000024 NCBI chr 1:84,339,269...84,361,686
Ensembl chr 1:84,339,261...84,353,725
JBrowse link
G Rnaset2 ribonuclease T2 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:53,174,879...53,192,048
Ensembl chr 1:53,174,879...53,192,048
JBrowse link
G Scarb2 scavenger receptor class B, member 2 ISO (MGI:3773765|PMID:18022370) RGD PMID:18022370 MGI:3773765 NCBI chr14:17,064,173...17,115,620
Ensembl chr14:17,064,353...17,115,963
JBrowse link
acrosomal lumen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31a5 SPATA31 subfamily A member 5 IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:2,417,700...2,423,486
Ensembl chr17:2,417,635...2,423,572
JBrowse link
G Zp3r zona pellucida 3 receptor IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:47,286,375...47,331,213
Ensembl chr13:47,286,393...47,331,187
JBrowse link
lysosomal matrix term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA PMID:18644871 RGD
MGI
PMID:9038169, PMID:18644871 RGD:10059368, RGD:10412301 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 IDA PMID:18644871 MGI PMID:18644871 RGD:10412301 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      cytoplasm 11462
        vacuole 585
          vacuolar lumen 20
            lysosomal lumen 17
              acrosomal lumen 2
              endolysosome lumen 0
              lysosomal matrix 2
Path 2
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      organelle 13278
        membrane-bounded organelle 11263
          intracellular membrane-bounded organelle 10518
            vacuole 585
              lytic vacuole 477
                lysosome 477
                  lysosomal lumen 17
                    acrosomal lumen 2
                    endolysosome lumen 0
                    lysosomal matrix 2
paths to the root