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ONTOLOGY REPORT - ANNOTATIONS


Term:dendritic shaft
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Accession:GO:0043198 term browser browse the term
Definition:Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
Synonyms:related_synonym: trunk
 xref: NIF_Subcellular:sao2034472720


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dendritic shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap5 A-kinase anchoring protein 5 IDA RGD PMID:16510716 RGD:2313219 NCBI chr 6:99,356,509...99,361,909
Ensembl chr 6:99,356,509...99,361,909
JBrowse link
G App amyloid beta precursor protein part_of ISO (PMID:11988176) RGD PMID:11988176 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 ISO (MGI:3583726|PMID:15996550) RGD PMID:15996550 MGI:3583726 NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IDA RGD PMID:18509026 RGD:11530067 NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IDA RGD PMID:24639075 RGD:11576288 NCBI chr10:109,107,326...109,187,458
Ensembl chr10:109,107,389...109,187,115
JBrowse link
G Cacna1b calcium voltage-gated channel subunit alpha1 B IDA RGD PMID:11353727 RGD:1580151 NCBI chr 3:1,740,026...1,924,959
Ensembl chr 3:1,740,024...1,924,827
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO (MGI:3580191|PMID:15090038) RGD PMID:15090038 MGI:3580191 NCBI chr 4:150,635,808...151,270,790
Ensembl chr 4:150,641,066...150,829,913
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit IDA RGD PMID:12077196 RGD:1600985 NCBI chr 1:123,897,341...124,039,263
Ensembl chr 1:123,899,657...124,039,196
JBrowse link
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 located_in IDA PMID:19265014 UniProt PMID:19265014, PMID:19265014 RGD:8554136, RGD:8554136 NCBI chr 1:220,474,485...220,480,723
Ensembl chr 1:220,474,493...220,480,132
JBrowse link
G Cnih3 cornichon family AMPA receptor auxiliary protein 3 located_in IDA PMID:19265014 UniProt PMID:19265014, PMID:19265014 RGD:8554136, RGD:8554136 NCBI chr13:99,663,150...99,770,625
Ensembl chr13:99,663,150...99,770,625
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain IDA RGD PMID:9581762 RGD:632510 NCBI chr 6:10,594,147...10,602,103
Ensembl chr 6:10,594,122...10,602,085
JBrowse link
G Ctnnb1 catenin beta 1 IDA RGD PMID:12123611 RGD:1299225 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dbn1 drebrin 1 IDA RGD PMID:12878700 RGD:10398728 NCBI chr17:9,679,511...9,693,878
Ensembl chr17:9,679,628...9,693,820
JBrowse link
G Dlg3 discs large MAGUK scaffold protein 3 located_in IDA PMID:12738960 UniProt PMID:12738960, PMID:12738960 RGD:8554028, RGD:8554028 NCBI chr  X:70,596,246...70,648,529
Ensembl chr  X:70,596,576...70,648,532
JBrowse link
G Drd1 dopamine receptor D1 IDA RGD PMID:16228995 RGD:7248764 NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
JBrowse link
G Epha4 Eph receptor A4 located_in IDA PMID:24658113 ARUK-UCL PMID:24658113, PMID:24658113 RGD:12911004, RGD:12911004 NCBI chr 9:83,111,222...83,253,486
Ensembl chr 9:83,111,222...83,253,458
JBrowse link
G Exoc4 exocyst complex component 4 located_in IDA PMID:12738960 UniProt PMID:12738960, PMID:12738960 RGD:8554028, RGD:8554028 NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
JBrowse link
G Flna filamin A IDA RGD PMID:22434607 RGD:7207403 NCBI chr  X:156,460,785...156,487,245
Ensembl chr  X:156,463,953...156,487,245
JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IDA RGD PMID:17241134 RGD:2315460 NCBI chr20:1,955,344...1,984,907
Ensembl chr20:1,955,359...1,984,863
JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 ISO (MGI:3654775|PMID:16819522) RGD PMID:16819522 MGI:3654775 NCBI chr19:24,786,604...24,798,231
Ensembl chr19:24,786,628...24,798,233
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 located_in IDA PMID:22919059
PMID:23822769
UniProt PMID:22919059, PMID:23822769, PMID:22919059, PMID:23822769 RGD:8553395, RGD:8554508, RGD:8553395, RGD:8554508 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 located_in IDA PMID:11100149 RGD
UniProt
PMID:12077196, PMID:11100149, PMID:11100149 RGD:1600985, RGD:8554168, RGD:8554168 NCBI chr10:42,441,723...42,760,200
Ensembl chr10:42,614,713...42,760,200
JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 located_in IDA PMID:10414981
PMID:11100149
RGD
UniProt
PMID:12077196, PMID:10414981, PMID:11100149, PMID:11100149, PMID:10414981 RGD:1600985, RGD:632958, RGD:8554168, RGD:8554168, RGD:632958 NCBI chr 2:179,584,302...179,704,629
Ensembl chr 2:179,584,308...179,704,629
JBrowse link
G Gria3 glutamate ionotropic receptor AMPA type subunit 3 IDA RGD PMID:12077196 RGD:1600985 NCBI chr  X:127,561,843...127,829,763
Ensembl chr  X:127,562,660...127,829,753
JBrowse link
G Grip2 glutamate receptor interacting protein 2 located_in IDA PMID:10414981 UniProt PMID:10414981, PMID:10414981 RGD:632958, RGD:632958 NCBI chr 4:123,585,184...123,636,040
Ensembl chr 4:123,586,231...123,636,040
JBrowse link
G Grk2 G protein-coupled receptor kinase 2 IDA RGD PMID:1403099 RGD:632163 NCBI chr 1:219,536,220...219,544,329
Ensembl chr 1:219,536,220...219,544,328
JBrowse link
G Grk3 G protein-coupled receptor kinase 3 IDA RGD PMID:1403099 RGD:632163 NCBI chr12:49,626,871...49,750,389
Ensembl chr12:49,626,871...49,746,272
JBrowse link
G Grm4 glutamate metabotropic receptor 4 located_in IDA PMID:11906782 UniProt PMID:11906782, PMID:11906782 RGD:8554275, RGD:8554275 NCBI chr20:6,745,682...6,791,521
Ensembl chr20:6,745,682...6,791,519
JBrowse link
G Grm5 glutamate metabotropic receptor 5 IDA RGD PMID:18582438 RGD:2303068 NCBI chr 1:151,207,846...151,785,038
Ensembl chr 1:151,439,409...151,783,392
JBrowse link
G Grm7 glutamate metabotropic receptor 7 IDA RGD PMID:12823458 RGD:2289008 NCBI chr 4:142,452,616...143,368,460
Ensembl chr 4:142,780,987...143,367,578
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO (MGI:2664026|PMID:12805290) RGD PMID:12805290 MGI:2664026 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 IDA RGD PMID:17439493 RGD:2316636 NCBI chr 2:50,099,576...50,499,799
Ensembl chr 2:50,099,576...50,499,799
JBrowse link
G Hcn2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 IDA RGD PMID:17439493 RGD:2316636 NCBI chr 7:12,851,730...12,870,087
Ensembl chr 7:12,851,739...12,874,215
JBrowse link
G Homer1 homer scaffold protein 1 IDA RGD PMID:9069287 RGD:633021 NCBI chr 2:22,909,550...23,012,303
Ensembl chr 2:22,909,569...23,009,678
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:11230095 RGD:10059401 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A IDA RGD PMID:18622042 RGD:2303638 NCBI chr15:56,666,152...56,732,469
Ensembl chr15:56,666,012...56,735,382
JBrowse link
G Ilk integrin-linked kinase IDA localized to the ends of axons but not dendrites in polarized neurons RGD PMID:17490631 RGD:2301744 NCBI chr 1:170,578,941...170,585,192
Ensembl chr 1:170,578,889...170,585,189
JBrowse link
G Inpp5j inositol polyphosphate-5-phosphatase J ISO (MGI:3654813|PMID:16280363) RGD PMID:16280363 MGI:3654813 NCBI chr14:83,730,861...83,742,016
Ensembl chr14:83,730,862...83,741,969
JBrowse link
G Jph4 junctophilin 4 located_in IEA
ISO
GO_REF:0000107
(MGI:3714568|PMID:17347645)
Ensembl
RGD
PMID:17347645 GO_REF:0000107 MGI:3714568 NCBI chr15:33,767,116...33,777,289
Ensembl chr15:33,768,595...33,775,109
JBrowse link
G Kcna4 potassium voltage-gated channel subfamily A member 4 located_in IDA PMID:14615029 SynGO-UCL PMID:14615029, PMID:14615029 RGD:12907553, RGD:12907553 NCBI chr 3:98,293,295...98,300,763
Ensembl chr 3:98,297,554...98,300,680
JBrowse link
G Kirrel1 kirre like nephrin family adhesion molecule 1 ISO (MGI:3839100|PMID:16874800) RGD PMID:16874800 MGI:3839100 NCBI chr 2:186,420,743...186,515,209
Ensembl chr 2:186,420,795...186,515,135
JBrowse link
G Kirrel3 kirre like nephrin family adhesion molecule 3 ISO (MGI:3839100|PMID:16874800) RGD PMID:16874800 MGI:3839100 NCBI chr 8:35,692,525...36,254,755
Ensembl chr 8:36,125,999...36,254,753
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 IDA RGD PMID:16638019 RGD:2317707 NCBI chr 5:75,557,038...75,678,067
Ensembl chr 5:75,557,042...75,676,584
JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 IDA RGD PMID:12415013 RGD:1299532 NCBI chr16:22,250,452...22,306,667
Ensembl chr16:22,250,470...22,306,662
JBrowse link
G Map1a microtubule-associated protein 1A located_in IDA PMID:2509111 ARUK-UCL PMID:2509111, PMID:2509111 RGD:13514077, RGD:13514077 NCBI chr 3:113,251,918...113,272,193
Ensembl chr 3:113,251,778...113,272,186
JBrowse link
G Map2 microtubule-associated protein 2 located_in IDA
ISO
PMID:3835499
(MGI:3583726|PMID:15996550)
RGD PMID:15996550, PMID:3835499, PMID:3835499 MGI:3583726, RGD:13514083, RGD:13514083 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
G Mpp2 membrane palmitoylated protein 2 ISO (MGI:5766670|PMID:26880549) RGD PMID:26880549 MGI:5766670 NCBI chr10:89,998,284...90,030,766
Ensembl chr10:89,999,917...90,030,639
JBrowse link
G Nlgn1 neuroligin 1 IDA RGD PMID:22539981 RGD:9831126 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IDA RGD PMID:22539981 RGD:9831126 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase IDA PMID:1041498 UniProt PMID:1041498 RGD:8553508 NCBI chr10:91,879,608...91,986,242
Ensembl chr10:91,878,633...92,008,082
JBrowse link
G Ntsr1 neurotensin receptor 1 IDA RGD PMID:9763490 RGD:9831116 NCBI chr 3:175,982,313...176,046,345
Ensembl chr 3:175,885,894...176,046,345
JBrowse link
G Ntsr2 neurotensin receptor 2 IDA RGD PMID:16564027 RGD:9743898 NCBI chr 6:41,917,065...41,923,780
Ensembl chr 6:41,917,132...41,923,542
JBrowse link
G Prex1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 IDA RGD PMID:18697831 RGD:2314615 NCBI chr 3:163,329,580...163,477,822
Ensembl chr 3:163,329,975...163,477,715
JBrowse link
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta located_in ISS
ISO
GO_REF:0000024
(MGI:5553024|PMID:24464040)
ParkinsonsUK-UCL
RGD
PMID:24464040 GO_REF:0000024 MGI:5553024 NCBI chr 6:51,265,509...51,356,383
Ensembl chr 6:51,265,515...51,356,383
JBrowse link
G Psen1 presenilin 1 part_of ISO
IBA
(MGI:2664026|PMID:12805290)
PMID:21873635
RGD PMID:12805290, PMID:21873635, PMID:21873635 MGI:2664026, RGD:13792537, RGD:13792537 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 part_of IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Rgs7bp regulator of G-protein signaling 7 binding protein IDA RGD PMID:18248908 RGD:13524856 NCBI chr 2:35,072,081...35,619,085
Ensembl chr 2:35,077,504...35,104,963
JBrowse link
G Rtn4r reticulon 4 receptor located_in ISS
ISO
GO_REF:0000024
(MGI:5315189|PMID:22325200)
UniProt
RGD
PMID:22325200 GO_REF:0000024 MGI:5315189 NCBI chr11:86,992,665...87,017,091
Ensembl chr11:86,992,399...87,017,115
JBrowse link
G Sez6 seizure related 6 homolog ISO (MGI:3776726|PMID:18031681) RGD PMID:18031681 MGI:3776726 NCBI chr10:64,865,802...64,915,461
Ensembl chr10:64,865,805...64,915,148
JBrowse link
G Slc12a5 solute carrier family 12 member 5 ISO (MGI:3849365|PMID:19307176) RGD PMID:19307176 MGI:3849365 NCBI chr 3:161,433,303...161,465,078
Ensembl chr 3:161,425,988...161,462,879
JBrowse link
G Slc1a1 solute carrier family 1 member 1 IDA PMID:10701825 ARUK-UCL PMID:10701825 RGD:21201260 NCBI chr 1:246,955,017...247,035,159
Ensembl chr 1:246,954,980...247,037,056
JBrowse link
G Slc1a2 solute carrier family 1 member 2 IDA RGD PMID:11896154 RGD:619547 NCBI chr 3:92,518,679...92,665,731
Ensembl chr 3:92,640,752...92,665,644
JBrowse link
G Slc8a1 solute carrier family 8 member A1 IDA RGD PMID:17215351 RGD:7175092 NCBI chr 6:4,244,076...4,564,262
Ensembl chr 6:4,258,991...4,520,604
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IDA RGD PMID:16418534 RGD:10043163 NCBI chr 5:2,257,910...2,497,429 JBrowse link
G Syndig1 synapse differentiation inducing 1 located_in IDA PMID:20152115 UniProt PMID:20152115, PMID:20152115 RGD:8554654, RGD:8554654 NCBI chr 3:145,031,427...145,199,273
Ensembl chr 3:145,032,200...145,199,356
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3614311|PMID:16452659)
Ensembl
RGD
PMID:16452659 GO_REF:0000107 MGI:3614311 NCBI chr20:5,535,434...5,564,657
Ensembl chr20:5,535,432...5,564,437
JBrowse link
G Whrn whirlin IDA RGD PMID:12641734 RGD:632479 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
G Zfp804a zinc finger protein 804A located_in IDA
ISO
PMID:27837918
(PMID:27837918)
RGD PMID:27837918, PMID:27837918, PMID:27837918 RGD:13210564, RGD:13210564 NCBI chr 3:69,268,348...69,574,118
Ensembl chr 3:69,549,673...69,573,420
JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 IDA RGD PMID:24117785 RGD:8554267 NCBI chr 3:162,480,766...162,594,145
Ensembl chr 3:162,480,804...162,581,610
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20685
    cellular anatomical entity 20386
      dendritic shaft 69
Path 2
Term Annotations click to browse term
  cellular_component 20685
    cellular anatomical entity 20386
      cell projection 2557
        plasma membrane bounded cell projection 2485
          neuron projection 1667
            dendritic tree 822
              dendrite 820
                dendritic shaft 69
paths to the root