ONTOLOGY REPORT - ANNOTATIONS |
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Term: | dendritic shaft |
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Accession: | GO:0043198
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browse the term
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Definition: | Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines. |
Synonyms: | related_synonym: | trunk |
| xref: | NIF_Subcellular:sao2034472720 |
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Abi3bp |
ABI family member 3 binding protein |
located_in |
IDA |
PMID:22496823 |
ARUK-UCL |
PMID:22496823 |
RGD:42722000 |
NCBI chr11:43,912,187...44,128,888
Ensembl chr11:43,913,043...44,128,929
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Akap5 |
A-kinase anchoring protein 5 |
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IDA |
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RGD |
PMID:16510716 |
RGD:2313219 |
NCBI chr 6:95,051,527...95,061,075
Ensembl chr 6:95,051,537...95,061,578
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App |
amyloid beta precursor protein |
located_in |
ISO IEA |
(PMID:11988176) GO_REF:0000107 |
RGD Ensembl |
PMID:11988176 |
GO_REF:0000107 |
NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
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Arhgef2 |
Rho/Rac guanine nucleotide exchange factor 2 |
located_in |
ISO |
(MGI:3583726|PMID:15996550) |
RGD |
PMID:15996550 |
MGI:3583726 |
NCBI chr 2:174,061,126...174,118,355
Ensembl chr 2:174,062,976...174,118,355
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Arpc2 |
actin related protein 2/3 complex, subunit 2 |
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IDA |
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RGD |
PMID:18509026 |
RGD:11530067 |
NCBI chr 9:75,820,782...75,851,471
Ensembl chr 9:75,820,770...75,851,471
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Baiap2 |
BAR/IMD domain containing adaptor protein 2 |
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IDA |
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RGD |
PMID:24639075 |
RGD:11576288 |
NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134
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Cacna1b |
calcium voltage-gated channel subunit alpha1 B |
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IDA |
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RGD |
PMID:11353727 |
RGD:1580151 |
NCBI chr 3:7,380,892...7,546,104
Ensembl chr 3:7,380,922...7,546,091
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Cacna1c |
calcium voltage-gated channel subunit alpha1 C |
located_in |
ISO |
(MGI:3580191|PMID:15090038) |
RGD |
PMID:15090038 |
MGI:3580191 |
NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
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Chrna7 |
cholinergic receptor nicotinic alpha 7 subunit |
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IDA |
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RGD |
PMID:12077196 |
RGD:1600985 |
NCBI chr 1:116,715,286...116,837,223
Ensembl chr 1:116,714,711...116,837,240
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Cnih2 |
cornichon family AMPA receptor auxiliary protein 2 |
located_in |
IDA |
PMID:19265014 |
UniProt |
PMID:19265014 |
RGD:8554136 |
NCBI chr 1:202,399,416...202,405,110
Ensembl chr 1:202,399,419...202,405,089
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Cnih3 |
cornichon family AMPA receptor auxiliary protein 3 |
located_in |
IDA |
PMID:19265014 |
UniProt |
PMID:19265014 |
RGD:8554136 |
NCBI chr13:93,016,707...93,208,168
Ensembl chr13:93,099,784...93,208,121
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Cript |
CXXC repeat containing interactor of PDZ3 domain |
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IDA |
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RGD |
PMID:9581762 |
RGD:632510 |
NCBI chr 6:7,581,428...7,589,384
Ensembl chr 6:7,580,703...7,589,399
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Ctnnb1 |
catenin beta 1 |
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IDA |
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RGD |
PMID:12123611 |
RGD:1299225 |
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Dbn1 |
drebrin 1 |
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IDA |
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RGD |
PMID:12878700 |
RGD:10398728 |
NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984
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Dlg3 |
discs large MAGUK scaffold protein 3 |
located_in |
IDA |
PMID:12738960 |
UniProt |
PMID:12738960 |
RGD:8554028 |
NCBI chr X:65,859,653...65,911,887
Ensembl chr X:65,860,172...65,910,322
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Drd1 |
dopamine receptor D1 |
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IDA |
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RGD |
PMID:16228995 |
RGD:7248764 |
NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
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Epha4 |
Eph receptor A4 |
located_in |
IDA |
PMID:24658113 |
ARUK-UCL |
PMID:24658113 |
RGD:12911004 |
NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
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Exoc4 |
exocyst complex component 4 |
located_in |
IDA |
PMID:12738960 |
UniProt |
PMID:12738960 |
RGD:8554028 |
NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723
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Flna |
filamin A |
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IDA |
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RGD |
PMID:22434607 |
RGD:7207403 |
NCBI chr X:152,007,758...152,034,266
Ensembl chr X:152,007,758...152,031,052
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Fubp3 |
far upstream element binding protein 3 |
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IDA |
MMO:0000538 |
RGD |
PMID:23121659 |
RGD:12792285 |
NCBI chr 3:14,855,527...14,904,540
Ensembl chr 3:14,855,557...14,904,540
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Gabbr1 |
gamma-aminobutyric acid type B receptor subunit 1 |
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IDA |
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RGD |
PMID:17241134 |
RGD:2315460 |
NCBI chr20:1,464,534...1,494,114
Ensembl chr20:1,464,534...1,493,994
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Gipc1 |
GIPC PDZ domain containing family, member 1 |
located_in |
ISO IEA |
(MGI:3654775|PMID:16819522) GO_REF:0000107 |
RGD Ensembl |
PMID:16819522 |
GO_REF:0000107 MGI:3654775 |
NCBI chr19:24,474,291...24,487,083
Ensembl chr19:24,453,123...24,486,997
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Gper1 |
G protein-coupled estrogen receptor 1 |
located_in |
IDA |
PMID:22919059 PMID:23822769 |
UniProt |
PMID:22919059 PMID:23822769 |
RGD:8553395, RGD:8554508 |
NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889
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Gria1 |
glutamate ionotropic receptor AMPA type subunit 1 |
located_in |
IDA |
PMID:11100149 MMO:0000538 |
RGD UniProt |
PMID:12077196 PMID:11100149 PMID:19160501 |
RGD:1600985, RGD:8554168, RGD:152998909 |
NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
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Gria2 |
glutamate ionotropic receptor AMPA type subunit 2 |
located_in |
IDA |
PMID:11100149 PMID:10414981 MMO:0000538 MMO:0000686 |
RGD UniProt |
PMID:12077196 PMID:11100149 PMID:10414981 PMID:11007883 PMID:11978826 PMID:16157387 PMID:19160501 PMID:10414981 More...
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RGD:1600985, RGD:8554168, RGD:632958, RGD:5688258, RGD:625696, RGD:152995269, RGD:152998909, RGD:632958 |
NCBI chr 2:165,949,379...166,069,510
Ensembl chr 2:165,947,521...166,069,510
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Gria3 |
glutamate ionotropic receptor AMPA type subunit 3 |
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IDA |
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RGD |
PMID:12077196 |
RGD:1600985 |
NCBI chr X:120,238,515...120,504,106
Ensembl chr X:120,238,534...120,504,096
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Grip1 |
glutamate receptor interacting protein 1 |
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IDA |
MMO:0000686 |
RGD |
PMID:17626212 |
RGD:152995392 |
NCBI chr 7:54,934,856...55,592,274
Ensembl chr 7:54,934,250...55,592,273
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Grip2 |
glutamate receptor interacting protein 2 |
located_in |
IDA |
PMID:10414981 |
UniProt |
PMID:10414981 |
RGD:632958 |
NCBI chr 4:124,271,456...124,356,538
Ensembl chr 4:124,271,456...124,321,268
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Grk2 |
G protein-coupled receptor kinase 2 |
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IDA |
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RGD |
PMID:1403099 |
RGD:632163 |
NCBI chr 1:201,581,480...201,601,580
Ensembl chr 1:201,581,480...201,601,582
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Grk3 |
G protein-coupled receptor kinase 3 |
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IDA |
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RGD |
PMID:1403099 |
RGD:632163 |
NCBI chr12:43,624,778...43,735,375
Ensembl chr12:43,624,897...43,731,262
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Grm4 |
glutamate metabotropic receptor 4 |
located_in |
IDA |
PMID:11906782 |
UniProt |
PMID:11906782 |
RGD:8554275 |
NCBI chr20:5,484,172...5,572,821
Ensembl chr20:5,481,124...5,572,821
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Grm5 |
glutamate metabotropic receptor 5 |
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IDA |
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RGD |
PMID:18582438 |
RGD:2303068 |
NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274
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Grm7 |
glutamate metabotropic receptor 7 |
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IDA |
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RGD |
PMID:12823458 |
RGD:2289008 |
NCBI chr 4:143,730,862...144,613,230
Ensembl chr 4:143,731,259...144,612,344
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Gsk3b |
glycogen synthase kinase 3 beta |
located_in |
ISO |
(MGI:2664026|PMID:12805290) |
RGD |
PMID:12805290 |
MGI:2664026 |
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
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Hcn1 |
hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 |
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IDA |
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RGD |
PMID:17439493 |
RGD:2316636 |
NCBI chr 2:49,495,771...49,899,702
Ensembl chr 2:49,495,771...49,899,774
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Hcn2 |
hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 |
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IDA |
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RGD |
PMID:17439493 |
RGD:2316636 |
NCBI chr 7:9,969,801...9,988,839
Ensembl chr 7:9,970,368...9,988,841
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Homer1 |
homer scaffold protein 1 |
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IDA |
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RGD |
PMID:9069287 |
RGD:633021 |
NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
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Hspa8 |
heat shock protein family A (Hsp70) member 8 |
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IDA |
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RGD |
PMID:11230095 |
RGD:10059401 |
NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
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Htr2a |
5-hydroxytryptamine receptor 2A |
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IDA |
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RGD |
PMID:18622042 |
RGD:2303638 |
NCBI chr15:49,950,035...50,022,188
Ensembl chr15:49,950,804...50,020,928
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Ilk |
integrin-linked kinase |
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IDA |
localized to the ends of axons but not dendrites in polarized neurons |
RGD |
PMID:17490631 |
RGD:2301744 |
NCBI chr 1:160,088,839...160,095,140
Ensembl chr 1:160,088,897...160,095,140
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Inpp5j |
inositol polyphosphate-5-phosphatase J |
located_in |
ISO IEA |
(MGI:3654813|PMID:16280363) GO_REF:0000107 |
RGD Ensembl |
PMID:16280363 |
GO_REF:0000107 MGI:3654813 |
NCBI chr14:78,374,161...78,385,305
Ensembl chr14:78,374,161...78,385,326
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Jph4 |
junctophilin 4 |
located_in |
ISO |
(MGI:3714568|PMID:17347645) |
RGD |
PMID:17347645 |
MGI:3714568 |
NCBI chr15:28,579,579...28,588,903
Ensembl chr15:28,571,568...28,587,573
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Kcna4 |
potassium voltage-gated channel subfamily A member 4 |
located_in |
IDA |
PMID:14615029 |
SynGO-UCL |
PMID:14615029 |
RGD:12907553 |
NCBI chr 3:93,756,399...93,778,004
Ensembl chr 3:93,756,446...93,769,162
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Kirrel1 |
kirre like nephrin family adhesion molecule 1 |
located_in |
ISO |
(MGI:3839100|PMID:16874800) |
RGD |
PMID:16874800 |
MGI:3839100 |
NCBI chr 2:172,521,644...172,615,057
Ensembl chr 2:172,525,245...172,615,299
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Kirrel3 |
kirre like nephrin family adhesion molecule 3 |
located_in |
ISO |
(MGI:3839100|PMID:16874800) |
RGD |
PMID:16874800 |
MGI:3839100 |
NCBI chr 8:32,865,779...33,407,555
Ensembl chr 8:32,862,776...33,405,676
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Lpar1 |
lysophosphatidic acid receptor 1 |
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IDA |
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RGD |
PMID:16638019 |
RGD:2317707 |
NCBI chr 5:73,229,047...73,347,874
Ensembl chr 5:73,229,625...73,369,895
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Lzts1 |
leucine zipper tumor suppressor 1 |
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IDA |
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RGD |
PMID:12415013 |
RGD:1299532 |
NCBI chr16:20,542,756...20,598,204
Ensembl chr16:20,542,809...20,598,203
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Map1a |
microtubule-associated protein 1A |
located_in |
IDA |
PMID:2509111 |
ARUK-UCL |
PMID:2509111 |
RGD:13514077 |
NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
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Map2 |
microtubule-associated protein 2 |
located_in |
IDA ISO |
PMID:3835499 (MGI:3583726|PMID:15996550) MMO:0000538 |
RGD |
PMID:15996550 PMID:3835499 PMID:23121659 |
MGI:3583726, RGD:13514083, RGD:12792285 |
NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
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Mpp2 |
MAGUK p55 scaffold protein 2 |
located_in |
ISO IEA |
(MGI:5766670|PMID:26880549) GO_REF:0000107 |
RGD Ensembl |
PMID:26880549 |
GO_REF:0000107 MGI:5766670 |
NCBI chr10:87,011,434...87,043,883
Ensembl chr10:87,011,434...87,043,896
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Nlgn1 |
neuroligin 1 |
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IDA |
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RGD |
PMID:22539981 |
RGD:9831126 |
NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464
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Nlgn2 |
neuroligin 2 |
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IDA |
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RGD |
PMID:22539981 |
RGD:9831126 |
NCBI chr10:54,544,588...54,557,854
Ensembl chr10:54,544,588...54,558,434
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Nsf |
N-ethylmaleimide sensitive factor, vesicle fusing ATPase |
located_in |
IDA |
PMID:1041498 |
UniProt |
PMID:1041498 |
RGD:8553508 |
NCBI chr10:88,727,912...88,857,375
Ensembl chr10:88,727,912...88,857,386
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Ntsr1 |
neurotensin receptor 1 |
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IDA |
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RGD |
PMID:9763490 |
RGD:9831116 |
NCBI chr 3:167,606,215...167,656,377
Ensembl chr 3:167,606,215...167,656,377
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Ntsr2 |
neurotensin receptor 2 |
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IDA |
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RGD |
PMID:16564027 |
RGD:9743898 |
NCBI chr 6:39,424,297...39,431,015
Ensembl chr 6:39,424,324...39,431,014
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Prex1 |
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 |
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IDA |
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RGD |
PMID:18697831 |
RGD:2314615 |
NCBI chr 3:155,306,950...155,456,688
Ensembl chr 3:155,306,950...155,456,688
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Prkar2b |
protein kinase cAMP-dependent type II regulatory subunit beta |
located_in |
ISS ISO |
GO_REF:0000024 (MGI:5553024|PMID:24464040) |
ParkinsonsUK-UCL RGD |
PMID:24464040 |
GO_REF:0000024 MGI:5553024 |
NCBI chr 6:48,563,659...48,653,933
Ensembl chr 6:48,563,662...48,653,933
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Psen1 |
presenilin 1 |
located_in is_active_in |
ISO IBA |
(MGI:2664026|PMID:12805290) PMID:21873635 |
RGD |
PMID:12805290 PMID:21873635 |
MGI:2664026, RGD:13792537 |
NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
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Psen2 |
presenilin 2 |
is_active_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174
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Rgs7bp |
regulator of G-protein signaling 7 binding protein |
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IDA |
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RGD |
PMID:18248908 |
RGD:13524856 |
NCBI chr 2:36,133,944...36,231,505
Ensembl chr 2:36,139,201...36,231,505
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Rtn4r |
reticulon 4 receptor |
located_in |
ISS ISO |
GO_REF:0000024 (MGI:5315189|PMID:22325200) |
UniProt RGD |
PMID:22325200 |
GO_REF:0000024 MGI:5315189 |
NCBI chr11:82,844,585...82,869,012
Ensembl chr11:82,844,309...82,869,466
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Sez6 |
seizure related 6 homolog |
located_in is_active_in |
ISO IBA |
(MGI:3776726|PMID:18031681) PMID:21873635 |
RGD |
PMID:18031681 PMID:21873635 |
MGI:3776726, RGD:13792537 |
NCBI chr10:62,818,931...62,868,686
Ensembl chr10:62,819,069...62,868,671
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Slc12a5 |
solute carrier family 12 member 5 |
located_in |
ISO |
(MGI:3849365|PMID:19307176) |
RGD |
PMID:19307176 |
MGI:3849365 |
NCBI chr 3:153,696,522...153,735,801
Ensembl chr 3:153,696,517...153,735,765
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Slc1a1 |
solute carrier family 1 member 1 |
part_of |
IDA |
PMID:10701825 |
ARUK-UCL |
PMID:10701825 |
RGD:21201260 |
NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
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Slc1a2 |
solute carrier family 1 member 2 |
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IDA |
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RGD |
PMID:11896154 |
RGD:619547 |
NCBI chr 3:89,005,129...89,126,498
Ensembl chr 3:89,005,129...89,126,498
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Slc8a1 |
solute carrier family 8 member A1 |
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IDA |
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RGD |
PMID:17215351 |
RGD:7175092 |
NCBI chr 6:13,194,609...13,547,369
Ensembl chr 6:13,194,662...13,535,628
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Stau2 |
staufen double-stranded RNA binding protein 2 |
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IDA |
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RGD |
PMID:16418534 |
RGD:10043163 |
NCBI chr 5:2,840,801...3,084,451
Ensembl chr 5:2,840,765...3,084,929
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Syndig1 |
synapse differentiation inducing 1 |
located_in |
IDA |
PMID:20152115 |
UniProt |
PMID:20152115 |
RGD:8554654 |
NCBI chr 3:138,030,995...138,234,646
Ensembl chr 3:138,031,769...138,198,122
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Syngap1 |
synaptic Ras GTPase activating protein 1 |
located_in |
ISO IEA |
(MGI:3614311|PMID:16452659) GO_REF:0000107 |
RGD Ensembl |
PMID:16452659 |
GO_REF:0000107 MGI:3614311 |
NCBI chr20:5,026,366...5,056,659
Ensembl chr20:5,026,364...5,056,672
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Whrn |
whirlin |
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IDA |
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RGD |
PMID:12641734 |
RGD:632479 |
NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
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Zfp804a |
zinc finger protein 804A |
located_in |
ISO IDA |
(PMID:27837918) |
RGD |
PMID:27837918 PMID:27837918 |
RGD:13210564 |
NCBI chr 3:67,033,481...67,267,769
Ensembl chr 3:67,034,170...67,263,607
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Zmynd8 |
zinc finger, MYND-type containing 8 |
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IDA |
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RGD |
PMID:24117785 |
RGD:8554267 |
NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463
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Term paths to the root
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