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ONTOLOGY REPORT - ANNOTATIONS


Term:dendritic shaft
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Accession:GO:0043198 term browser browse the term
Definition:Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
Synonyms:related_synonym: trunk
 xref: NIF_Subcellular:sao2034472720



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dendritic shaft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein located_in IDA PMID:22496823 ARUK-UCL PMID:22496823 RGD:42722000 NCBI chr11:43,912,187...44,128,888
Ensembl chr11:43,913,043...44,128,929
JBrowse link
G Akap5 A-kinase anchoring protein 5 IDA RGD PMID:16510716 RGD:2313219 NCBI chr 6:95,051,527...95,061,075
Ensembl chr 6:95,051,537...95,061,578
JBrowse link
G App amyloid beta precursor protein located_in ISO (PMID:11988176) RGD PMID:11988176 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 located_in ISO (MGI:3583726|PMID:15996550) RGD PMID:15996550 MGI:3583726 NCBI chr 2:174,061,126...174,118,355
Ensembl chr 2:174,062,976...174,118,355
JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 IDA RGD PMID:18509026 RGD:11530067 NCBI chr 9:75,820,782...75,851,471
Ensembl chr 9:75,820,770...75,851,471
JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IDA RGD PMID:24639075 RGD:11576288 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134
JBrowse link
G Cacna1b calcium voltage-gated channel subunit alpha1 B IDA RGD PMID:11353727 RGD:1580151 NCBI chr 3:7,380,892...7,546,104
Ensembl chr 3:7,380,922...7,546,091
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C located_in ISO (MGI:3580191|PMID:15090038) RGD PMID:15090038 MGI:3580191 NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit IDA RGD PMID:12077196 RGD:1600985 NCBI chr 1:116,715,286...116,837,223
Ensembl chr 1:116,714,711...116,837,240
JBrowse link
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 located_in IDA PMID:19265014 UniProt PMID:19265014 RGD:8554136 NCBI chr 1:202,399,416...202,405,110
Ensembl chr 1:202,399,419...202,405,089
JBrowse link
G Cnih3 cornichon family AMPA receptor auxiliary protein 3 located_in IDA PMID:19265014 UniProt PMID:19265014 RGD:8554136 NCBI chr13:93,016,707...93,208,168
Ensembl chr13:93,099,784...93,208,121
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain IDA RGD PMID:9581762 RGD:632510 NCBI chr 6:7,581,428...7,589,384
Ensembl chr 6:7,580,703...7,589,399
JBrowse link
G Ctnnb1 catenin beta 1 IDA RGD PMID:12123611 RGD:1299225 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Dbn1 drebrin 1 IDA RGD PMID:12878700 RGD:10398728 NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984
JBrowse link
G Dlg3 discs large MAGUK scaffold protein 3 located_in IDA PMID:12738960 UniProt PMID:12738960 RGD:8554028 NCBI chr  X:65,859,653...65,911,887
Ensembl chr  X:65,860,172...65,910,322
JBrowse link
G Drd1 dopamine receptor D1 IDA RGD PMID:16228995 RGD:7248764 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Epha4 Eph receptor A4 located_in IDA PMID:24658113 ARUK-UCL PMID:24658113 RGD:12911004 NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
JBrowse link
G Exoc4 exocyst complex component 4 located_in IDA PMID:12738960 UniProt PMID:12738960 RGD:8554028 NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723
JBrowse link
G Flna filamin A IDA RGD PMID:22434607 RGD:7207403 NCBI chr  X:152,007,758...152,034,266
Ensembl chr  X:152,007,758...152,031,052
JBrowse link
G Fubp3 far upstream element binding protein 3 IDA MMO:0000538 RGD PMID:23121659 RGD:12792285 NCBI chr 3:14,855,527...14,904,540
Ensembl chr 3:14,855,557...14,904,540
JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 IDA RGD PMID:17241134 RGD:2315460 NCBI chr20:1,464,534...1,494,114
Ensembl chr20:1,464,534...1,493,994
JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 located_in ISO (MGI:3654775|PMID:16819522) RGD PMID:16819522 MGI:3654775 NCBI chr19:24,474,291...24,487,083
Ensembl chr19:24,453,123...24,486,997
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 located_in IDA PMID:22919059
PMID:23822769
UniProt PMID:22919059 PMID:23822769 RGD:8553395, RGD:8554508 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 located_in IDA PMID:11100149 RGD
UniProt
PMID:12077196 PMID:11100149 RGD:1600985, RGD:8554168 NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 located_in IDA PMID:10414981
PMID:11100149
RGD
UniProt
PMID:12077196 PMID:10414981 PMID:11100149 RGD:1600985, RGD:632958, RGD:8554168 NCBI chr 2:165,949,379...166,069,510
Ensembl chr 2:165,947,521...166,069,510
JBrowse link
G Gria3 glutamate ionotropic receptor AMPA type subunit 3 IDA RGD PMID:12077196 RGD:1600985 NCBI chr  X:120,238,515...120,504,106
Ensembl chr  X:120,238,534...120,504,096
JBrowse link
G Grip2 glutamate receptor interacting protein 2 located_in IDA PMID:10414981 UniProt PMID:10414981 RGD:632958 NCBI chr 4:124,271,456...124,356,538
Ensembl chr 4:124,271,456...124,321,268
JBrowse link
G Grk2 G protein-coupled receptor kinase 2 IDA RGD PMID:1403099 RGD:632163 NCBI chr 1:201,581,480...201,601,580
Ensembl chr 1:201,581,480...201,601,582
JBrowse link
G Grk3 G protein-coupled receptor kinase 3 IDA RGD PMID:1403099 RGD:632163 NCBI chr12:43,624,778...43,735,375
Ensembl chr12:43,624,897...43,731,262
JBrowse link
G Grm4 glutamate metabotropic receptor 4 located_in IDA PMID:11906782 UniProt PMID:11906782 RGD:8554275 NCBI chr20:5,484,172...5,572,821
Ensembl chr20:5,481,124...5,572,821
JBrowse link
G Grm5 glutamate metabotropic receptor 5 IDA RGD PMID:18582438 RGD:2303068 NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274
JBrowse link
G Grm7 glutamate metabotropic receptor 7 IDA RGD PMID:12823458 RGD:2289008 NCBI chr 4:143,730,862...144,613,230
Ensembl chr 4:143,731,259...144,612,344
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta located_in ISO (MGI:2664026|PMID:12805290) RGD PMID:12805290 MGI:2664026 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 IDA RGD PMID:17439493 RGD:2316636 NCBI chr 2:49,495,771...49,899,702
Ensembl chr 2:49,495,771...49,899,774
JBrowse link
G Hcn2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 IDA RGD PMID:17439493 RGD:2316636 NCBI chr 7:9,969,801...9,988,839
Ensembl chr 7:9,970,368...9,988,841
JBrowse link
G Homer1 homer scaffold protein 1 IDA RGD PMID:9069287 RGD:633021 NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:11230095 RGD:10059401 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Htr2a 5-hydroxytryptamine receptor 2A IDA RGD PMID:18622042 RGD:2303638 NCBI chr15:49,950,035...50,022,188
Ensembl chr15:49,950,804...50,020,928
JBrowse link
G Ilk integrin-linked kinase IDA localized to the ends of axons but not dendrites in polarized neurons RGD PMID:17490631 RGD:2301744 NCBI chr 1:160,088,839...160,095,140
Ensembl chr 1:160,088,897...160,095,140
JBrowse link
G Inpp5j inositol polyphosphate-5-phosphatase J located_in ISO (MGI:3654813|PMID:16280363) RGD PMID:16280363 MGI:3654813 NCBI chr14:78,374,161...78,385,305
Ensembl chr14:78,374,161...78,385,326
JBrowse link
G Jph4 junctophilin 4 located_in ISO (MGI:3714568|PMID:17347645) RGD PMID:17347645 MGI:3714568 NCBI chr15:28,579,579...28,588,903
Ensembl chr15:28,571,568...28,587,573
JBrowse link
G Kcna4 potassium voltage-gated channel subfamily A member 4 located_in IDA PMID:14615029 SynGO-UCL PMID:14615029 RGD:12907553 NCBI chr 3:93,756,399...93,778,004
Ensembl chr 3:93,756,446...93,769,162
JBrowse link
G Kirrel1 kirre like nephrin family adhesion molecule 1 located_in ISO (MGI:3839100|PMID:16874800) RGD PMID:16874800 MGI:3839100 NCBI chr 2:172,521,644...172,615,057
Ensembl chr 2:172,525,245...172,615,299
JBrowse link
G Kirrel3 kirre like nephrin family adhesion molecule 3 located_in ISO (MGI:3839100|PMID:16874800) RGD PMID:16874800 MGI:3839100 NCBI chr 8:32,865,779...33,407,555
Ensembl chr 8:32,862,776...33,405,676
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 IDA RGD PMID:16638019 RGD:2317707 NCBI chr 5:73,229,047...73,347,874
Ensembl chr 5:73,229,625...73,369,895
JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 IDA RGD PMID:12415013 RGD:1299532 NCBI chr16:20,542,756...20,598,204
Ensembl chr16:20,542,809...20,598,203
JBrowse link
G Map1a microtubule-associated protein 1A located_in IDA PMID:2509111 ARUK-UCL PMID:2509111 RGD:13514077 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
JBrowse link
G Map2 microtubule-associated protein 2 located_in IDA
ISO
PMID:3835499
MMO:0000538
(MGI:3583726|PMID:15996550)
RGD PMID:15996550 PMID:3835499 PMID:23121659 MGI:3583726, RGD:13514083, RGD:12792285 NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
JBrowse link
G Mpp2 MAGUK p55 scaffold protein 2 located_in ISO (MGI:5766670|PMID:26880549) RGD PMID:26880549 MGI:5766670 NCBI chr10:87,011,434...87,043,883
Ensembl chr10:87,011,434...87,043,896
JBrowse link
G Nlgn1 neuroligin 1 IDA RGD PMID:22539981 RGD:9831126 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464
JBrowse link
G Nlgn2 neuroligin 2 IDA RGD PMID:22539981 RGD:9831126 NCBI chr10:54,544,588...54,557,854
Ensembl chr10:54,544,588...54,558,434
JBrowse link
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase located_in IDA PMID:1041498 UniProt PMID:1041498 RGD:8553508 NCBI chr10:88,727,912...88,857,375
Ensembl chr10:88,727,912...88,857,386
JBrowse link
G Ntsr1 neurotensin receptor 1 IDA RGD PMID:9763490 RGD:9831116 NCBI chr 3:167,606,215...167,656,377
Ensembl chr 3:167,606,215...167,656,377
JBrowse link
G Ntsr2 neurotensin receptor 2 IDA RGD PMID:16564027 RGD:9743898 NCBI chr 6:39,424,297...39,431,015
Ensembl chr 6:39,424,324...39,431,014
JBrowse link
G Prex1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 IDA RGD PMID:18697831 RGD:2314615 NCBI chr 3:155,306,950...155,456,688
Ensembl chr 3:155,306,950...155,456,688
JBrowse link
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta located_in ISS
ISO
GO_REF:0000024
(MGI:5553024|PMID:24464040)
ParkinsonsUK-UCL
RGD
PMID:24464040 GO_REF:0000024 MGI:5553024 NCBI chr 6:48,563,659...48,653,933
Ensembl chr 6:48,563,662...48,653,933
JBrowse link
G Psen1 presenilin 1 located_in
is_active_in
ISO
IBA
(MGI:2664026|PMID:12805290)
PMID:21873635
RGD PMID:12805290 PMID:21873635 MGI:2664026, RGD:13792537 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Psen2 presenilin 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174
JBrowse link
G Rgs7bp regulator of G-protein signaling 7 binding protein IDA RGD PMID:18248908 RGD:13524856 NCBI chr 2:36,133,944...36,231,505
Ensembl chr 2:36,139,201...36,231,505
JBrowse link
G Rtn4r reticulon 4 receptor located_in ISS
ISO
GO_REF:0000024
(MGI:5315189|PMID:22325200)
UniProt
RGD
PMID:22325200 GO_REF:0000024 MGI:5315189 NCBI chr11:82,844,585...82,869,012
Ensembl chr11:82,844,309...82,869,466
JBrowse link
G Sez6 seizure related 6 homolog located_in
is_active_in
ISO
IBA
(MGI:3776726|PMID:18031681)
PMID:21873635
RGD PMID:18031681 PMID:21873635 MGI:3776726, RGD:13792537 NCBI chr10:62,818,931...62,868,686
Ensembl chr10:62,819,069...62,868,671
JBrowse link
G Slc12a5 solute carrier family 12 member 5 located_in ISO (MGI:3849365|PMID:19307176) RGD PMID:19307176 MGI:3849365 NCBI chr 3:153,696,522...153,735,801
Ensembl chr 3:153,696,517...153,735,765
JBrowse link
G Slc1a1 solute carrier family 1 member 1 part_of IDA PMID:10701825 ARUK-UCL PMID:10701825 RGD:21201260 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
JBrowse link
G Slc1a2 solute carrier family 1 member 2 IDA RGD PMID:11896154 RGD:619547 NCBI chr 3:89,005,129...89,126,498
Ensembl chr 3:89,005,129...89,126,498
JBrowse link
G Slc8a1 solute carrier family 8 member A1 IDA RGD PMID:17215351 RGD:7175092 NCBI chr 6:13,194,609...13,547,369
Ensembl chr 6:13,194,662...13,535,628
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IDA RGD PMID:16418534 RGD:10043163 NCBI chr 5:2,840,801...3,084,451
Ensembl chr 5:2,840,765...3,084,929
JBrowse link
G Syndig1 synapse differentiation inducing 1 located_in IDA PMID:20152115 UniProt PMID:20152115 RGD:8554654 NCBI chr 3:138,030,995...138,234,646
Ensembl chr 3:138,031,769...138,198,122
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 located_in ISO (MGI:3614311|PMID:16452659) RGD PMID:16452659 MGI:3614311 NCBI chr20:5,026,366...5,056,659
Ensembl chr20:5,026,364...5,056,672
JBrowse link
G Whrn whirlin IDA RGD PMID:12641734 RGD:632479 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
G Zfp804a zinc finger protein 804A located_in ISO
IDA
(PMID:27837918) RGD PMID:27837918 PMID:27837918 RGD:13210564 NCBI chr 3:67,033,481...67,267,769
Ensembl chr 3:67,034,170...67,263,607
JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 IDA RGD PMID:24117785 RGD:8554267 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      dendritic shaft 71
Path 2
Term Annotations click to browse term
  cellular_component 19187
    cellular anatomical entity 18928
      cell projection 2593
        plasma membrane bounded cell projection 2515
          neuron projection 1682
            dendritic tree 812
              dendrite 810
                dendritic shaft 71
paths to the root