ONTOLOGY REPORT - ANNOTATIONS |
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Term: | dendritic shaft |
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Accession: | GO:0043198
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browse the term
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Definition: | Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines. |
Synonyms: | related_synonym: | trunk |
| xref: | NIF_Subcellular:sao2034472720 |
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Akap5 |
A-kinase anchoring protein 5 |
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IDA |
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RGD |
PMID:16510716 |
RGD:2313219 |
NCBI chr 6:99,356,509...99,361,909
Ensembl chr 6:99,356,509...99,361,909
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App |
amyloid beta precursor protein |
part_of |
ISO |
(PMID:11988176) |
RGD |
PMID:11988176 |
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NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
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Arhgef2 |
Rho/Rac guanine nucleotide exchange factor 2 |
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ISO |
(MGI:3583726|PMID:15996550) |
RGD |
PMID:15996550 |
MGI:3583726 |
NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
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Arpc2 |
actin related protein 2/3 complex, subunit 2 |
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IDA |
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RGD |
PMID:18509026 |
RGD:11530067 |
NCBI chr 9:81,518,163...81,548,871
Ensembl chr 9:81,518,176...81,548,871
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Baiap2 |
BAR/IMD domain containing adaptor protein 2 |
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IDA |
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RGD |
PMID:24639075 |
RGD:11576288 |
NCBI chr10:109,107,326...109,187,458
Ensembl chr10:109,107,389...109,187,115
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Cacna1b |
calcium voltage-gated channel subunit alpha1 B |
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IDA |
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RGD |
PMID:11353727 |
RGD:1580151 |
NCBI chr 3:1,740,026...1,924,959
Ensembl chr 3:1,740,024...1,924,827
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Cacna1c |
calcium voltage-gated channel subunit alpha1 C |
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ISO |
(MGI:3580191|PMID:15090038) |
RGD |
PMID:15090038 |
MGI:3580191 |
NCBI chr 4:150,635,808...151,270,790
Ensembl chr 4:150,641,066...150,829,913
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Chrna7 |
cholinergic receptor nicotinic alpha 7 subunit |
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IDA |
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RGD |
PMID:12077196 |
RGD:1600985 |
NCBI chr 1:123,897,341...124,039,263
Ensembl chr 1:123,899,657...124,039,196
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Cnih2 |
cornichon family AMPA receptor auxiliary protein 2 |
located_in |
IDA |
PMID:19265014 |
UniProt |
PMID:19265014, PMID:19265014 |
RGD:8554136, RGD:8554136 |
NCBI chr 1:220,474,485...220,480,723
Ensembl chr 1:220,474,493...220,480,132
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Cnih3 |
cornichon family AMPA receptor auxiliary protein 3 |
located_in |
IDA |
PMID:19265014 |
UniProt |
PMID:19265014, PMID:19265014 |
RGD:8554136, RGD:8554136 |
NCBI chr13:99,663,150...99,770,625
Ensembl chr13:99,663,150...99,770,625
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Cript |
CXXC repeat containing interactor of PDZ3 domain |
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IDA |
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RGD |
PMID:9581762 |
RGD:632510 |
NCBI chr 6:10,594,147...10,602,103
Ensembl chr 6:10,594,122...10,602,085
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Ctnnb1 |
catenin beta 1 |
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IDA |
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RGD |
PMID:12123611 |
RGD:1299225 |
NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
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Dbn1 |
drebrin 1 |
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IDA |
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RGD |
PMID:12878700 |
RGD:10398728 |
NCBI chr17:9,679,511...9,693,878
Ensembl chr17:9,679,628...9,693,820
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Dlg3 |
discs large MAGUK scaffold protein 3 |
located_in |
IDA |
PMID:12738960 |
UniProt |
PMID:12738960, PMID:12738960 |
RGD:8554028, RGD:8554028 |
NCBI chr X:70,596,246...70,648,529
Ensembl chr X:70,596,576...70,648,532
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Drd1 |
dopamine receptor D1 |
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IDA |
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RGD |
PMID:16228995 |
RGD:7248764 |
NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
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Epha4 |
Eph receptor A4 |
located_in |
IDA |
PMID:24658113 |
ARUK-UCL |
PMID:24658113, PMID:24658113 |
RGD:12911004, RGD:12911004 |
NCBI chr 9:83,111,222...83,253,486
Ensembl chr 9:83,111,222...83,253,458
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Exoc4 |
exocyst complex component 4 |
located_in |
IDA |
PMID:12738960 |
UniProt |
PMID:12738960, PMID:12738960 |
RGD:8554028, RGD:8554028 |
NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
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Flna |
filamin A |
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IDA |
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RGD |
PMID:22434607 |
RGD:7207403 |
NCBI chr X:156,460,785...156,487,245
Ensembl chr X:156,463,953...156,487,245
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Gabbr1 |
gamma-aminobutyric acid type B receptor subunit 1 |
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IDA |
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RGD |
PMID:17241134 |
RGD:2315460 |
NCBI chr20:1,955,344...1,984,907
Ensembl chr20:1,955,359...1,984,863
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Gipc1 |
GIPC PDZ domain containing family, member 1 |
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ISO |
(MGI:3654775|PMID:16819522) |
RGD |
PMID:16819522 |
MGI:3654775 |
NCBI chr19:24,786,604...24,798,231
Ensembl chr19:24,786,628...24,798,233
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Gper1 |
G protein-coupled estrogen receptor 1 |
located_in |
IDA |
PMID:22919059 PMID:23822769 |
UniProt |
PMID:22919059, PMID:23822769, PMID:22919059, PMID:23822769 |
RGD:8553395, RGD:8554508, RGD:8553395, RGD:8554508 |
NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
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Gria1 |
glutamate ionotropic receptor AMPA type subunit 1 |
located_in |
IDA |
PMID:11100149 |
RGD UniProt |
PMID:12077196, PMID:11100149, PMID:11100149 |
RGD:1600985, RGD:8554168, RGD:8554168 |
NCBI chr10:42,441,723...42,760,200
Ensembl chr10:42,614,713...42,760,200
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Gria2 |
glutamate ionotropic receptor AMPA type subunit 2 |
located_in |
IDA |
PMID:10414981 PMID:11100149 |
RGD UniProt |
PMID:12077196, PMID:10414981, PMID:11100149, PMID:11100149, PMID:10414981 |
RGD:1600985, RGD:632958, RGD:8554168, RGD:8554168, RGD:632958 |
NCBI chr 2:179,584,302...179,704,629
Ensembl chr 2:179,584,308...179,704,629
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Gria3 |
glutamate ionotropic receptor AMPA type subunit 3 |
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IDA |
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RGD |
PMID:12077196 |
RGD:1600985 |
NCBI chr X:127,561,843...127,829,763
Ensembl chr X:127,562,660...127,829,753
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Grip2 |
glutamate receptor interacting protein 2 |
located_in |
IDA |
PMID:10414981 |
UniProt |
PMID:10414981, PMID:10414981 |
RGD:632958, RGD:632958 |
NCBI chr 4:123,585,184...123,636,040
Ensembl chr 4:123,586,231...123,636,040
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Grk2 |
G protein-coupled receptor kinase 2 |
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IDA |
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RGD |
PMID:1403099 |
RGD:632163 |
NCBI chr 1:219,536,220...219,544,329
Ensembl chr 1:219,536,220...219,544,328
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Grk3 |
G protein-coupled receptor kinase 3 |
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IDA |
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RGD |
PMID:1403099 |
RGD:632163 |
NCBI chr12:49,626,871...49,750,389
Ensembl chr12:49,626,871...49,746,272
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Grm4 |
glutamate metabotropic receptor 4 |
located_in |
IDA |
PMID:11906782 |
UniProt |
PMID:11906782, PMID:11906782 |
RGD:8554275, RGD:8554275 |
NCBI chr20:6,745,682...6,791,521
Ensembl chr20:6,745,682...6,791,519
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Grm5 |
glutamate metabotropic receptor 5 |
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IDA |
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RGD |
PMID:18582438 |
RGD:2303068 |
NCBI chr 1:151,207,846...151,785,038
Ensembl chr 1:151,439,409...151,783,392
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Grm7 |
glutamate metabotropic receptor 7 |
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IDA |
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RGD |
PMID:12823458 |
RGD:2289008 |
NCBI chr 4:142,452,616...143,368,460
Ensembl chr 4:142,780,987...143,367,578
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Gsk3b |
glycogen synthase kinase 3 beta |
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ISO |
(MGI:2664026|PMID:12805290) |
RGD |
PMID:12805290 |
MGI:2664026 |
NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
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Hcn1 |
hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 |
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IDA |
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RGD |
PMID:17439493 |
RGD:2316636 |
NCBI chr 2:50,099,576...50,499,799
Ensembl chr 2:50,099,576...50,499,799
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Hcn2 |
hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 |
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IDA |
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RGD |
PMID:17439493 |
RGD:2316636 |
NCBI chr 7:12,851,730...12,870,087
Ensembl chr 7:12,851,739...12,874,215
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Homer1 |
homer scaffold protein 1 |
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IDA |
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RGD |
PMID:9069287 |
RGD:633021 |
NCBI chr 2:22,909,550...23,012,303
Ensembl chr 2:22,909,569...23,009,678
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Hspa8 |
heat shock protein family A (Hsp70) member 8 |
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IDA |
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RGD |
PMID:11230095 |
RGD:10059401 |
NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
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Htr2a |
5-hydroxytryptamine receptor 2A |
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IDA |
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RGD |
PMID:18622042 |
RGD:2303638 |
NCBI chr15:56,666,152...56,732,469
Ensembl chr15:56,666,012...56,735,382
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Ilk |
integrin-linked kinase |
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IDA |
localized to the ends of axons but not dendrites in polarized neurons |
RGD |
PMID:17490631 |
RGD:2301744 |
NCBI chr 1:170,578,941...170,585,192
Ensembl chr 1:170,578,889...170,585,189
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Inpp5j |
inositol polyphosphate-5-phosphatase J |
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ISO |
(MGI:3654813|PMID:16280363) |
RGD |
PMID:16280363 |
MGI:3654813 |
NCBI chr14:83,730,861...83,742,016
Ensembl chr14:83,730,862...83,741,969
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Jph4 |
junctophilin 4 |
located_in |
IEA ISO |
GO_REF:0000107 (MGI:3714568|PMID:17347645) |
Ensembl RGD |
PMID:17347645 |
GO_REF:0000107 MGI:3714568 |
NCBI chr15:33,767,116...33,777,289
Ensembl chr15:33,768,595...33,775,109
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Kcna4 |
potassium voltage-gated channel subfamily A member 4 |
located_in |
IDA |
PMID:14615029 |
SynGO-UCL |
PMID:14615029, PMID:14615029 |
RGD:12907553, RGD:12907553 |
NCBI chr 3:98,293,295...98,300,763
Ensembl chr 3:98,297,554...98,300,680
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Kirrel1 |
kirre like nephrin family adhesion molecule 1 |
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ISO |
(MGI:3839100|PMID:16874800) |
RGD |
PMID:16874800 |
MGI:3839100 |
NCBI chr 2:186,420,743...186,515,209
Ensembl chr 2:186,420,795...186,515,135
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Kirrel3 |
kirre like nephrin family adhesion molecule 3 |
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ISO |
(MGI:3839100|PMID:16874800) |
RGD |
PMID:16874800 |
MGI:3839100 |
NCBI chr 8:35,692,525...36,254,755
Ensembl chr 8:36,125,999...36,254,753
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Lpar1 |
lysophosphatidic acid receptor 1 |
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IDA |
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RGD |
PMID:16638019 |
RGD:2317707 |
NCBI chr 5:75,557,038...75,678,067
Ensembl chr 5:75,557,042...75,676,584
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Lzts1 |
leucine zipper tumor suppressor 1 |
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IDA |
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RGD |
PMID:12415013 |
RGD:1299532 |
NCBI chr16:22,250,452...22,306,667
Ensembl chr16:22,250,470...22,306,662
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Map1a |
microtubule-associated protein 1A |
located_in |
IDA |
PMID:2509111 |
ARUK-UCL |
PMID:2509111, PMID:2509111 |
RGD:13514077, RGD:13514077 |
NCBI chr 3:113,251,918...113,272,193
Ensembl chr 3:113,251,778...113,272,186
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Map2 |
microtubule-associated protein 2 |
located_in |
IDA ISO |
PMID:3835499 (MGI:3583726|PMID:15996550) |
RGD |
PMID:15996550, PMID:3835499, PMID:3835499 |
MGI:3583726, RGD:13514083, RGD:13514083 |
NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
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Mpp2 |
membrane palmitoylated protein 2 |
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ISO |
(MGI:5766670|PMID:26880549) |
RGD |
PMID:26880549 |
MGI:5766670 |
NCBI chr10:89,998,284...90,030,766
Ensembl chr10:89,999,917...90,030,639
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Nlgn1 |
neuroligin 1 |
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IDA |
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RGD |
PMID:22539981 |
RGD:9831126 |
NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
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Nlgn2 |
neuroligin 2 |
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IDA |
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RGD |
PMID:22539981 |
RGD:9831126 |
NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
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Nsf |
N-ethylmaleimide sensitive factor, vesicle fusing ATPase |
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IDA |
PMID:1041498 |
UniProt |
PMID:1041498 |
RGD:8553508 |
NCBI chr10:91,879,608...91,986,242
Ensembl chr10:91,878,633...92,008,082
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Ntsr1 |
neurotensin receptor 1 |
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IDA |
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RGD |
PMID:9763490 |
RGD:9831116 |
NCBI chr 3:175,982,313...176,046,345
Ensembl chr 3:175,885,894...176,046,345
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Ntsr2 |
neurotensin receptor 2 |
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IDA |
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RGD |
PMID:16564027 |
RGD:9743898 |
NCBI chr 6:41,917,065...41,923,780
Ensembl chr 6:41,917,132...41,923,542
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Prex1 |
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 |
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IDA |
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RGD |
PMID:18697831 |
RGD:2314615 |
NCBI chr 3:163,329,580...163,477,822
Ensembl chr 3:163,329,975...163,477,715
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Prkar2b |
protein kinase cAMP-dependent type II regulatory subunit beta |
located_in |
ISS ISO |
GO_REF:0000024 (MGI:5553024|PMID:24464040) |
ParkinsonsUK-UCL RGD |
PMID:24464040 |
GO_REF:0000024 MGI:5553024 |
NCBI chr 6:51,265,509...51,356,383
Ensembl chr 6:51,265,515...51,356,383
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Psen1 |
presenilin 1 |
part_of |
ISO IBA |
(MGI:2664026|PMID:12805290) PMID:21873635 |
RGD |
PMID:12805290, PMID:21873635, PMID:21873635 |
MGI:2664026, RGD:13792537, RGD:13792537 |
NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
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Psen2 |
presenilin 2 |
part_of |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635, PMID:21873635 |
RGD:13792537, RGD:13792537 |
NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
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Rgs7bp |
regulator of G-protein signaling 7 binding protein |
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IDA |
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RGD |
PMID:18248908 |
RGD:13524856 |
NCBI chr 2:35,072,081...35,619,085
Ensembl chr 2:35,077,504...35,104,963
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Rtn4r |
reticulon 4 receptor |
located_in |
ISS ISO |
GO_REF:0000024 (MGI:5315189|PMID:22325200) |
UniProt RGD |
PMID:22325200 |
GO_REF:0000024 MGI:5315189 |
NCBI chr11:86,992,665...87,017,091
Ensembl chr11:86,992,399...87,017,115
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Sez6 |
seizure related 6 homolog |
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ISO |
(MGI:3776726|PMID:18031681) |
RGD |
PMID:18031681 |
MGI:3776726 |
NCBI chr10:64,865,802...64,915,461
Ensembl chr10:64,865,805...64,915,148
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Slc12a5 |
solute carrier family 12 member 5 |
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ISO |
(MGI:3849365|PMID:19307176) |
RGD |
PMID:19307176 |
MGI:3849365 |
NCBI chr 3:161,433,303...161,465,078
Ensembl chr 3:161,425,988...161,462,879
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Slc1a1 |
solute carrier family 1 member 1 |
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IDA |
PMID:10701825 |
ARUK-UCL |
PMID:10701825 |
RGD:21201260 |
NCBI chr 1:246,955,017...247,035,159
Ensembl chr 1:246,954,980...247,037,056
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Slc1a2 |
solute carrier family 1 member 2 |
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IDA |
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RGD |
PMID:11896154 |
RGD:619547 |
NCBI chr 3:92,518,679...92,665,731
Ensembl chr 3:92,640,752...92,665,644
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Slc8a1 |
solute carrier family 8 member A1 |
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IDA |
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RGD |
PMID:17215351 |
RGD:7175092 |
NCBI chr 6:4,244,076...4,564,262
Ensembl chr 6:4,258,991...4,520,604
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Stau2 |
staufen double-stranded RNA binding protein 2 |
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IDA |
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RGD |
PMID:16418534 |
RGD:10043163 |
NCBI chr 5:2,257,910...2,497,429
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Syndig1 |
synapse differentiation inducing 1 |
located_in |
IDA |
PMID:20152115 |
UniProt |
PMID:20152115, PMID:20152115 |
RGD:8554654, RGD:8554654 |
NCBI chr 3:145,031,427...145,199,273
Ensembl chr 3:145,032,200...145,199,356
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Syngap1 |
synaptic Ras GTPase activating protein 1 |
located_in |
IEA ISO |
GO_REF:0000107 (MGI:3614311|PMID:16452659) |
Ensembl RGD |
PMID:16452659 |
GO_REF:0000107 MGI:3614311 |
NCBI chr20:5,535,434...5,564,657
Ensembl chr20:5,535,432...5,564,437
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Whrn |
whirlin |
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IDA |
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RGD |
PMID:12641734 |
RGD:632479 |
NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
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Zfp804a |
zinc finger protein 804A |
located_in |
IDA ISO |
PMID:27837918 (PMID:27837918) |
RGD |
PMID:27837918, PMID:27837918, PMID:27837918 |
RGD:13210564, RGD:13210564 |
NCBI chr 3:69,268,348...69,574,118
Ensembl chr 3:69,549,673...69,573,420
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Zmynd8 |
zinc finger, MYND-type containing 8 |
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IDA |
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RGD |
PMID:24117785 |
RGD:8554267 |
NCBI chr 3:162,480,766...162,594,145
Ensembl chr 3:162,480,804...162,581,610
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Term paths to the root
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