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ONTOLOGY REPORT - ANNOTATIONS

Term:stress fiber assembly
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Accession:GO:0043149 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a stress fiber. A stress fiber is a contractile actin filament bundle that consists of short actin filaments with alternating polarity.
Synonyms:related_synonym: actin cable assembly;   actin cable formation;   stress fibre biosynthesis;   stress fibre formation


show annotations for term's descendants           Sort by:
stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 involved_in ISO (PMID:15611106) RGD PMID:15611106 NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061 		JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of ISO (PMID:15199148) RGD PMID:15199148 NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463 		JBrowse link
G Cul3 cullin 3 involved_in ISO
IEA		 (PMID:19782033)
GO_REF:0000107		 RGD
Ensembl		 PMID:19782033 GO_REF:0000107 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Dnm2 dynamin 2 involved_in IMP PMID:35620056 UniProt PMID:35620056 RGD:401901236 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Eln elastin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2153007 (PMID:14614988)		 Ensembl
RGD		 PMID:14614988 GO_REF:0000107 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928 		JBrowse link
G Fam171a1 family with sequence similarity 171, member A1 involved_in ISO
IBA		 (PMID:30312582)
GO_REF:0000033		 RGD
GO_Central		 PMID:30312582 GO_REF:0000033 NCBI chr17:75,024,582...75,148,348
Ensembl chr17:75,024,575...75,150,255 		JBrowse link
G Fhdc1 FH2 domain containing 1 involved_in ISO (PMID:18815276) RGD PMID:18815276 NCBI chr 2:169,790,917...169,829,580
Ensembl chr 2:169,790,947...169,827,896 		JBrowse link
G Itgb1 integrin subunit beta 1 NOT|involved_in ISO (PMID:24036928)
(MGI:5582864|PMID:24036928)		 RGD PMID:24036928 MGI:5582864 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itgb5 integrin subunit beta 5 involved_in ISO (PMID:24036928)
(MGI:5582864|PMID:24036928)		 RGD PMID:24036928 MGI:5582864 NCBI chr11:66,828,428...66,944,231
Ensembl chr11:66,829,285...66,944,472 		JBrowse link
G Kctd13 potassium channel tetramerization domain containing 13 involved_in ISO (PMID:19782033) RGD PMID:19782033 NCBI chr 1:181,534,534...181,552,843
Ensembl chr 1:181,534,515...181,552,881 		JBrowse link
G Limk1 LIM domain kinase 1 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:88190 (PMID:15199148)		 Ensembl
RGD		 PMID:15199148 GO_REF:0000107 NCBI chr12:22,026,697...22,060,605
Ensembl chr12:22,026,672...22,060,606 		JBrowse link
G Pdcd10 programmed cell death 10 NOT|involved_in ISO (PMID:20332113) RGD PMID:20332113 NCBI chr 2:160,303,465...160,346,086
Ensembl chr 2:160,303,449...160,346,018 		JBrowse link
G Pdlim1 PDZ and LIM domain 1 involved_in IMP PMID:22659164 UniProt PMID:22659164 RGD:13432282 NCBI chr 1:239,042,372...239,091,074
Ensembl chr 1:239,042,385...239,091,076 		JBrowse link
G Phactr1 phosphatase and actin regulator 1 involved_in ISO
IEA
IBA
ISS		 (PMID:22976292)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:5487491|PMID:22976292)
GO_REF:0000024		 RGD
TreeGrafter
GO_Central
Ensembl
UniProt		 PMID:22976292 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5487491 NCBI chr17:21,560,364...22,040,166
Ensembl chr17:21,562,721...22,039,831 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta IMP RGD PMID:11739395 RGD:70597 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282 		JBrowse link
G Rhoa ras homolog family member A involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA
ISS		 (PMID:19782033), (PMID:31570889)
(PMID:10699171), (PMID:14614988)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
Ensembl
UniProt		 PMID:10699171 PMID:14614988 PMID:19782033 PMID:31570889 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Rhoc ras homolog family member C involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:192,287,065...192,293,292
Ensembl chr 2:192,287,130...192,295,306 		JBrowse link
G RSA-14-44 RSA-14-44 protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:95,251,657...95,253,029
Ensembl chr 4:95,251,610...95,253,088 		JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:1196128|PMID:9461600)		 UniProt
RGD		 PMID:9461600 GO_REF:0000024 MGI:1196128 NCBI chr 1:239,107,882...239,330,276
Ensembl chr 1:239,108,777...239,330,169 		JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO MGI:2662475 (PMID:26585507) RGD PMID:26585507 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:24036928) RGD PMID:24036928 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206|MGI:3764698 (PMID:20525922) RGD PMID:20525922 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tnfaip1 TNF alpha induced protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19782033)		 UniProt
RGD		 PMID:19782033 GO_REF:0000024 NCBI chr10:63,417,774...63,432,466
Ensembl chr10:63,417,775...63,432,466 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 IMP RGD PMID:31784544 RGD:155882534 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
G Zyx zyxin involved_in ISO (PMID:24036928) RGD PMID:24036928 NCBI chr 4:71,236,767...71,246,553
Ensembl chr 4:71,237,451...71,246,553 		JBrowse link
negative regulation of stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arap1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 involved_in ISO (PMID:11804590) RGD PMID:11804590 NCBI chr 1:155,748,622...155,814,186
Ensembl chr 1:155,748,652...155,814,184 		JBrowse link
G Arhgap28 Rho GTPase activating protein 28 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:25211221)		 GO_Central
RGD		 PMID:25211221 GO_REF:0000033 NCBI chr 9:107,832,584...107,998,030
Ensembl chr 9:107,833,330...107,998,000 		JBrowse link
G Arhgap6 Rho GTPase activating protein 6 involved_in ISO (PMID:10699171) RGD PMID:10699171 NCBI chr  X:24,953,464...25,490,003
Ensembl chr  X:24,953,464...25,488,663 		JBrowse link
G Arhgef18 Rho/Rac guanine nucleotide exchange factor 18 involved_in ISO (PMID:25753039) RGD PMID:25753039 NCBI chr12:1,395,035...1,503,082
Ensembl chr12:1,395,088...1,503,081 		JBrowse link
G Cgnl1 cingulin-like 1 involved_in ISO (PMID:25753039) RGD PMID:25753039 NCBI chr 8:72,273,401...72,424,842
Ensembl chr 8:72,275,645...72,422,917 		JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) RGD PMID:24859005 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) RGD PMID:24859005 NCBI chr 8:113,677,345...113,859,957
Ensembl chr 8:113,677,284...113,858,731 		JBrowse link
G Coro2b coronin 2B acts_upstream_of_or_within ISO MGI:4419137 (PMID:29162887) RGD PMID:29162887 NCBI chr 8:62,906,861...63,017,295
Ensembl chr 8:62,906,867...63,017,302 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein involved_in ISO
IEA		 (PMID:17932950)
GO_REF:0000107		 RGD
Ensembl		 PMID:17932950 GO_REF:0000107 NCBI chr16:55,246,716...55,671,441
Ensembl chr16:55,291,584...55,671,439 		JBrowse link
G F11r F11 receptor involved_in ISO (PMID:25753039) RGD PMID:25753039 NCBI chr13:83,873,797...83,897,388
Ensembl chr13:83,873,797...83,897,402 		JBrowse link
G Frmd7 FERM domain containing 7 acts_upstream_of_or_within ISO (PMID:23967341) RGD PMID:23967341 NCBI chr  X:130,375,925...130,423,836
Ensembl chr  X:130,377,227...130,423,771 		JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K involved_in ISO (PMID:12556481) RGD PMID:12556481 NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773 		JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase involved_in ISO
IEA		 (PMID:25198505)
GO_REF:0000107		 RGD
Ensembl		 PMID:25198505 GO_REF:0000107 NCBI chr 4:45,790,456...45,898,139
Ensembl chr 4:45,790,791...45,897,876 		JBrowse link
G Mir138-1 microRNA 138-1 involved_in ISO (PMID:20232393) RGD PMID:20232393 NCBI chr 8:122,300,966...122,301,064
Ensembl chr 8:122,300,966...122,301,064 		JBrowse link
G Mir138-2 microRNA 138-2 involved_in ISO (PMID:20232393) RGD PMID:20232393 NCBI chr19:10,674,193...10,674,274
Ensembl chr19:10,674,193...10,674,274 		JBrowse link
G Mir20a microRNA 20a involved_in ISO (PMID:22696064) RGD PMID:22696064 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Mir21 microRNA 21 involved_in ISO (PMID:21347332) RGD PMID:21347332 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Myoc myocilin involved_in ISO
IEA
ISS		 (PMID:17984096)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17984096 GO_REF:0000024 GO_REF:0000107 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127 		JBrowse link
G Pak2 p21 (RAC1) activated kinase 2 involved_in ISO (PMID:25753039) RGD PMID:25753039 NCBI chr11:68,707,940...68,768,816
Ensembl chr11:68,707,969...68,768,816 		JBrowse link
G Pfn1 profilin 1 involved_in ISO
IEA		 (PMID:23153535)
GO_REF:0000107		 RGD
Ensembl		 PMID:23153535 GO_REF:0000107 NCBI chr10:55,365,263...55,367,968
Ensembl chr10:55,365,262...55,527,631 		JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 involved_in ISO (PMID:24859005) RGD PMID:24859005 NCBI chr11:54,859,173...55,078,212
Ensembl chr11:54,859,135...55,078,467 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:6450670|PMID:11038173)		 Ensembl
RGD		 PMID:11038173 GO_REF:0000107 MGI:6450670 NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631 		JBrowse link
G Ppfia1 PTPRF interacting protein alpha 1 acts_upstream_of_or_within ISO (PMID:22266902) RGD PMID:22266902 NCBI chr 1:199,641,277...199,718,371
Ensembl chr 1:199,641,277...199,717,277 		JBrowse link
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A IMP RGD PMID:12052877 RGD:1299363 NCBI chr 4:32,970,501...33,292,360
Ensembl chr 4:33,024,450...33,286,907 		JBrowse link
G Rhpn1 rhophilin, Rho GTPase binding protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:25071083)		 GO_Central
RGD		 PMID:25071083 GO_REF:0000033 NCBI chr 7:107,391,948...107,402,713
Ensembl chr 7:107,391,984...107,402,713 		JBrowse link
G Rhpn2 rhophilin, Rho GTPase binding protein 2 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:25071083)
GO_REF:0000033		 RGD
GO_Central		 PMID:25071083 GO_REF:0000033 NCBI chr 1:87,991,143...88,051,895
Ensembl chr 1:87,991,144...88,051,902 		JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 IDA RGD PMID:11094076 RGD:1581790 NCBI chr 2:203,624,752...203,629,110
Ensembl chr 2:203,621,587...203,629,681 		JBrowse link
G Stmn1 stathmin 1 involved_in ISO (PMID:25198505) RGD PMID:25198505 NCBI chr 5:146,680,757...146,687,154
Ensembl chr 5:146,681,436...146,687,154 		JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:5315060|PMID:22194864)		 Ensembl
UniProt
RGD		 PMID:22194864 GO_REF:0000024 GO_REF:0000107 MGI:5315060 NCBI chr 4:96,707,950...96,709,650
Ensembl chr 4:96,707,951...96,709,650 		JBrowse link
G Tjp1 tight junction protein 1 involved_in ISO (MGI:6206452|PMID:25753039) RGD PMID:25753039 MGI:6206452 NCBI chr 1:118,849,838...119,094,492
Ensembl chr 1:118,849,838...119,094,432 		JBrowse link
G Tmeff2 transmembrane protein with EGF-like and two follistatin-like domains 2 acts_upstream_of_or_within ISO (PMID:24632071) RGD PMID:24632071 NCBI chr 9:50,445,947...50,733,473
Ensembl chr 9:50,436,079...50,733,475 		JBrowse link
G Tmsb15b2 thymosin beta 15B2 acts_upstream_of_or_within ISO (PMID:19233202) RGD PMID:19233202 NCBI chr  X:100,298,705...100,300,820
Ensembl chr  X:100,298,514...100,300,886 		JBrowse link
G Was WASP actin nucleation promoting factor involved_in ISO (PMID:8625410) RGD PMID:8625410 NCBI chr  X:14,405,105...14,413,850
Ensembl chr  X:14,405,124...14,413,849 		JBrowse link
G Wasf2 WASP family member 2 involved_in ISO (PMID:21107423) RGD PMID:21107423 NCBI chr 5:145,336,817...145,402,041
Ensembl chr 5:145,336,842...145,399,242 		JBrowse link
positive regulation of stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO (PMID:24863063) RGD PMID:24863063 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA		 (PMID:23726972)
GO_REF:0000107		 RGD
Ensembl		 PMID:23726972 GO_REF:0000107 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Arhgef10 Rho guanine nucleotide exchange factor 10 involved_in ISO
IBA		 (PMID:16896804)
GO_REF:0000033		 RGD
GO_Central		 PMID:16896804 GO_REF:0000033 NCBI chr16:74,647,147...74,738,784
Ensembl chr16:74,647,153...74,738,173 		JBrowse link
G Arhgef10l Rho guanine nucleotide exchange factor 10 like involved_in ISO
IBA		 (PMID:16112081)
GO_REF:0000033		 RGD
GO_Central		 PMID:16112081 GO_REF:0000033 NCBI chr 5:152,792,247...152,935,255
Ensembl chr 5:152,792,252...152,919,538 		JBrowse link
G Arhgef15 Rho guanine nucleotide exchange factor 15 involved_in IDA PMID:12775584 UniProt PMID:12775584 RGD:8554375 NCBI chr10:53,650,521...53,663,269
Ensembl chr10:53,650,553...53,663,913 		JBrowse link
G Arhgef5 Rho guanine nucleotide exchange factor 5 involved_in ISO (PMID:15601624) RGD PMID:15601624 NCBI chr 4:72,087,205...72,112,316
Ensembl chr 4:72,087,247...72,111,254 		JBrowse link
G Bag4 BAG cochaperone 4 involved_in ISO (MGI:5292318|PMID:21712384) RGD PMID:21712384 MGI:5292318 NCBI chr16:66,288,678...66,305,893
Ensembl chr16:66,288,678...66,308,663 		JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:104572 (PMID:15199148) RGD PMID:15199148 NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463 		JBrowse link
G Carmil1 capping protein regulator and myosin 1 linker 1 involved_in ISO (PMID:16054028)
(MGI:3588909|PMID:16054028)		 RGD PMID:16054028 MGI:3588909 NCBI chr17:40,807,921...41,088,326
Ensembl chr17:40,808,389...41,088,326 		JBrowse link
G Ccdc88a coiled coil domain containing 88A involved_in ISO (PMID:16139227) RGD PMID:16139227 NCBI chr14:103,104,091...103,256,112
Ensembl chr14:103,103,513...103,252,368 		JBrowse link
G Ccn2 cellular communication network factor 2 involved_in ISO
IEA		 (PMID:20008146)
GO_REF:0000107		 RGD
Ensembl		 PMID:20008146 GO_REF:0000107 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Cd47 Cd47 molecule involved_in IMP PMID:12023387 ARUK-UCL PMID:12023387 RGD:625650 NCBI chr11:50,906,052...50,970,000
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:26051942), (PMID:8625410) RGD PMID:8625410 PMID:26051942 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Epha1 Eph receptor A1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5294306|PMID:12775584)		 UniProt
RGD		 PMID:12775584 GO_REF:0000024 MGI:5294306 NCBI chr 4:71,246,409...71,260,920
Ensembl chr 4:71,246,409...71,260,846 		JBrowse link
G Evl Enah/Vasp-like involved_in ISO
IEA		 (PMID:23153535)
GO_REF:0000107		 RGD
Ensembl		 PMID:23153535 GO_REF:0000107 NCBI chr 6:127,473,119...127,594,342
Ensembl chr 6:127,474,543...127,594,344 		JBrowse link
G Fermt2 FERM domain containing kindlin 2 involved_in ISO (PMID:29496737) RGD PMID:29496737 NCBI chr15:18,682,927...18,751,959
Ensembl chr15:18,682,927...18,751,811 		JBrowse link
G Fhod1 formin homology 2 domain containing 1 involved_in ISO (PMID:15095401) RGD PMID:15095401 NCBI chr19:33,206,492...33,225,448
Ensembl chr19:33,206,492...33,225,356 		JBrowse link
G Gpr65 G-protein coupled receptor 65 involved_in ISO (PMID:15618224) RGD PMID:15618224 NCBI chr 6:117,515,786...117,536,514
Ensembl chr 6:117,515,648...117,536,512 		JBrowse link
G Itgb1bp1 integrin subunit beta 1 binding protein 1 involved_in ISO (MGI:5486551|PMID:17654484) RGD PMID:17654484 MGI:5486551 NCBI chr 6:40,820,693...40,836,074
Ensembl chr 6:40,821,339...40,836,037 		JBrowse link
G Kiss1r KISS1 receptor IDA RGD PMID:11457843 RGD:1357971 NCBI chr 7:9,785,135...9,790,283
Ensembl chr 7:9,785,135...9,788,793 		JBrowse link
G Limch1 LIM and calponin homology domains 1 involved_in ISO
IBA		 (PMID:28228547)
GO_REF:0000033		 RGD
GO_Central		 PMID:28228547 GO_REF:0000033 NCBI chr14:41,112,579...41,425,001
Ensembl chr14:41,114,803...41,425,191 		JBrowse link
G Limk1 LIM domain kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:88190 (PMID:15199148)
GO_REF:0000033
GO_REF:0000118		 Ensembl
RGD
GO_Central
TreeGrafter		 PMID:15199148 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:22,026,697...22,060,605
Ensembl chr12:22,026,672...22,060,606 		JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5645214|PMID:9600933)		 UniProt
RGD		 PMID:9600933 GO_REF:0000024 MGI:5645214 NCBI chr 5:73,229,047...73,347,874
Ensembl chr 5:73,229,625...73,369,895 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:15467718)		 Ensembl
RGD		 PMID:15467718 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Myoc myocilin involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:19188438)		 Ensembl
UniProt
RGD		 PMID:19188438 GO_REF:0000024 GO_REF:0000107 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in ISO
IEA		 (PMID:9537418)
GO_REF:0000107		 RGD
Ensembl		 PMID:9537418 GO_REF:0000107 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Nox4 NADPH oxidase 4 IMP RGD PMID:17511984 RGD:2324670 NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:26051942) RGD PMID:26051942 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO
ISS		 (PMID:11864573)
GO_REF:0000024		 RGD
UniProt		 PMID:11864573 GO_REF:0000024 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383 		JBrowse link
G Pdlim4 PDZ and LIM domain 4 involved_in IDA
IMP		 PMID:14729062
PMID:22659164		 UniProt PMID:14729062 PMID:22659164 RGD:1300470, RGD:13432282 NCBI chr10:38,198,686...38,212,935
Ensembl chr10:38,198,689...38,212,938 		JBrowse link
G Pfn1 profilin 1 IMP RGD PMID:12740026 RGD:2324854 NCBI chr10:55,365,263...55,367,968
Ensembl chr10:55,365,262...55,527,631 		JBrowse link
G Pfn2 profilin 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5545940|PMID:23153535)
(PMID:23153535)		 Ensembl
RGD		 PMID:23153535 GO_REF:0000107 MGI:5545940 NCBI chr 2:142,067,102...142,072,938
Ensembl chr 2:142,067,104...142,072,938 		JBrowse link
G Ppm1e protein phosphatase, Mg2+/Mn2+ dependent, 1E involved_in ISO (PMID:11864573) RGD PMID:11864573 NCBI chr10:72,051,643...72,187,439
Ensembl chr10:72,055,208...72,187,282 		JBrowse link
G Ppm1f protein phosphatase, Mg2+/Mn2+ dependent, 1F involved_in ISO RNAcentral:URS00001C770D_9606 (PMID:11864573), (PMID:20016286), (PMID:26498692) RGD PMID:11864573 PMID:20016286 PMID:26498692 NCBI chr11:84,064,422...84,094,410
Ensembl chr11:84,064,420...84,094,340 		JBrowse link
G Prkcq protein kinase C, theta IMP RGD PMID:9353339 RGD:1625621 NCBI chr17:67,246,394...67,379,049
Ensembl chr17:67,246,394...67,378,704 		JBrowse link
G Pxn paxillin involved_in ISO (PMID:24863063) RGD PMID:24863063 NCBI chr12:41,060,791...41,107,952
Ensembl chr12:41,060,791...41,107,931 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO
IEA		 (PMID:23129259), (PMID:8625410)
GO_REF:0000107		 RGD
Ensembl		 PMID:8625410 PMID:23129259 GO_REF:0000107 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 involved_in ISO
IEA
ISS		 (PMID:21840392)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21840392 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:128,875,772...128,898,203
Ensembl chr 7:128,875,773...128,898,521 		JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:19158077) RGD PMID:19158077 NCBI chr15:54,662,483...54,675,320
Ensembl chr15:54,662,483...54,681,141 		JBrowse link
G Rhoa ras homolog family member A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:8625410)
(PMID:25071083)
GO_REF:0000107
(PMID:15467718)		 RGD
Ensembl		 PMID:8625410 PMID:15467718 PMID:25071083 GO_REF:0000107 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Rhoc ras homolog family member C involved_in ISO (PMID:20232393) RGD PMID:20232393 NCBI chr 2:192,287,065...192,293,292
Ensembl chr 2:192,287,130...192,295,306 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO
IEA		 (PMID:20232393)
GO_REF:0000107		 RGD
Ensembl		 PMID:20232393 GO_REF:0000107 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031 		JBrowse link
G S100a10 S100 calcium binding protein A10 involved_in ISO
IEA		 (PMID:23129259)
GO_REF:0000107		 RGD
Ensembl		 PMID:23129259 GO_REF:0000107 NCBI chr 2:179,221,012...179,229,659
Ensembl chr 2:179,220,887...179,229,661 		JBrowse link
G Sdc4 syndecan 4 IMP RGD PMID:10504291 RGD:2312327 NCBI chr 3:153,154,888...153,173,576
Ensembl chr 3:153,154,896...153,173,580 		JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (PMID:20008146) RGD PMID:20008146 NCBI chr10:60,272,400...60,280,506
Ensembl chr10:60,272,400...60,281,243 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (MGI:5800302|PMID:27711054) RGD PMID:27711054 MGI:5800302 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Smad3 SMAD family member 3 IDA during transdifferentiation RGD PMID:15987742 RGD:2300418 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sorbs3 sorbin and SH3 domain containing 3 involved_in ISO (PMID:9885244) RGD PMID:9885244 NCBI chr15:45,252,921...45,284,758
Ensembl chr15:45,253,379...45,284,758 		JBrowse link
G Synpo2l synaptopodin 2-like involved_in ISO (MGI:6102963|PMID:29206857) RGD PMID:29206857 MGI:6102963 NCBI chr15:3,631,974...3,641,429
Ensembl chr15:3,631,834...3,641,429 		JBrowse link
G Tac1 tachykinin, precursor 1 IDA RGD PMID:17435548 RGD:2304338 NCBI chr 4:35,679,183...35,687,180
Ensembl chr 4:35,679,704...35,687,178 		JBrowse link
G Tacr1 tachykinin receptor 1 IMP RGD PMID:17435548 RGD:2304338 NCBI chr 4:114,920,844...115,089,733
Ensembl chr 4:114,920,844...115,089,733 		JBrowse link
G Tesk1 testis associated actin remodelling kinase 1 involved_in IDA
IBA		 PMID:18216281
GO_REF:0000033		 GO_Central PMID:18216281 GO_REF:0000033, RGD:13461749 NCBI chr 5:57,691,922...57,697,698
Ensembl chr 5:57,691,969...57,697,698 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in ISO (PMID:18718461) RGD PMID:18718461 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in ISO
IEA		 UniProtKB:P10600 (MGI:3820811|PMID:18718461)
GO_REF:0000107		 RGD
Ensembl		 PMID:18718461 GO_REF:0000107 MGI:3820811 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tpm1 tropomyosin 1 involved_in IGI PMID:15897890 BHF-UCL PMID:15897890 RGD:8656006 NCBI chr 8:67,635,479...67,662,330
Ensembl chr 8:67,635,479...67,662,802 		JBrowse link
G Tsc1 TSC complex subunit 1 IMP RGD PMID:15611338 RGD:1601406 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:20103596) RGD PMID:20103596 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt4 Wnt family member 4 involved_in ISO UniProtKB:P01112 (MGI:5487484|PMID:23027131) RGD PMID:23027131 MGI:5487484 NCBI chr 5:149,513,573...149,535,415
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
regulation of stress fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actg1 actin, gamma 1 involved_in ISO
IEA		 (PMID:25705373)
GO_REF:0000107		 RGD
Ensembl		 PMID:25705373 GO_REF:0000107 NCBI chr10:105,619,738...105,622,587
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Actg1l1 actin, gamma 1 like 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:72,977,767...72,979,691
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:22693585) RGD PMID:22693585 NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Asap3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 involved_in ISO
IBA		 (PMID:18400762)
GO_REF:0000033		 RGD
GO_Central		 PMID:18400762 GO_REF:0000033 NCBI chr 5:148,433,382...148,476,027
Ensembl chr 5:148,433,494...148,474,073 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3055492 (PMID:23716571) RGD PMID:23716571 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO UniProtKB:P42768 (PMID:8625410) RGD PMID:8625410 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Fhod1 formin homology 2 domain containing 1 involved_in ISO (PMID:16361249) RGD PMID:16361249 NCBI chr19:33,206,492...33,225,448
Ensembl chr19:33,206,492...33,225,356 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3608879 (PMID:23716571) RGD PMID:23716571 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 acts_upstream_of_or_within ISO MGI:2149438 (PMID:25217619) RGD PMID:25217619 NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631 		JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 acts_upstream_of_or_within ISO MGI:2159732 (PMID:25217619) RGD PMID:25217619 NCBI chr16:18,665,517...18,674,067
Ensembl chr16:18,665,457...18,674,065 		JBrowse link
G Ptger4 prostaglandin E receptor 4 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5315359|PMID:14665434)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:14665434 GO_REF:0000024 GO_REF:0000107 MGI:5315359 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO UniProtKB:P42768 (PMID:8625410) RGD PMID:8625410 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Synpo synaptopodin involved_in ISO (MGI:3577135|PMID:15841212) RGD PMID:15841212 MGI:3577135 NCBI chr18:54,048,299...54,106,388
Ensembl chr18:54,026,152...54,102,126 		JBrowse link
G Tsc1 TSC complex subunit 1 involved_in ISO
IEA		 (PMID:10806479)
GO_REF:0000107		 RGD
Ensembl		 PMID:10806479 GO_REF:0000107 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:23716571) RGD PMID:23716571 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
G Was WASP actin nucleation promoting factor involved_in ISO UniProtKB:P60953|UniProtKB:P63000 (PMID:8625410) RGD PMID:8625410 NCBI chr  X:14,405,105...14,413,850
Ensembl chr  X:14,405,124...14,413,849 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      actin filament-based process 873
        actin cytoskeleton organization 782
          actomyosin structure organization 230
            stress fiber assembly 121
              negative regulation of stress fiber assembly 34
              positive regulation of stress fiber assembly 58
              regulation of stress fiber assembly + 100
Path 2
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular component organization or biogenesis 7217
        cellular component organization 6909
          organelle organization 3831
            cytoskeleton organization 1627
              actin cytoskeleton organization 782
                actin filament organization 517
                  actin filament bundle organization 195
                    actin filament bundle assembly 192
                      contractile actin filament bundle assembly 121
                        stress fiber assembly 121
                          negative regulation of stress fiber assembly 34
                          positive regulation of stress fiber assembly 58
                          regulation of stress fiber assembly + 100
paths to the root