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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic cleft
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Accession:GO:0043083 term browser browse the term
Definition:The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released.
Synonyms:xref: NIF_Subcellular:sao243541954



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synaptic cleft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase located_in
is_active_in
IDA PMID:26820598 SynGO PMID:26820598 PMID:26820598 RGD:12050110, RGD:12050110 NCBI chr12:19,406,133...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Adgrb3 adhesion G protein-coupled receptor B3 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:25611509)
GO_Central
RGD
PMID:25611509 GO_REF:0000033 NCBI chr 9:27,421,168...28,148,979
Ensembl chr 9:27,421,168...28,148,855
JBrowse link
G Agrn agrin located_in ISO (MGI:5464044|PMID:23056392) RGD PMID:23056392 MGI:5464044 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003
JBrowse link
G Apoe apolipoprotein E is_active_in
located_in
ISO
IEA
(PMID:22637583)
GO_REF:0000107
RGD
Ensembl
PMID:22637583 GO_REF:0000107 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G C11h22orf39 similar to human chromosome 22 open reading frame 39 located_in ISO (MGI:7311075|PMID:35771867) RGD PMID:35771867 MGI:7311075 NCBI chr11:82,155,992...82,160,235
Ensembl chr11:82,159,528...82,160,235
JBrowse link
G C1ql1 complement C1q like 1 is_active_in
located_in
ISO (PMID:25611509) RGD PMID:25611509 NCBI chr10:87,902,125...87,909,556
Ensembl chr10:87,902,137...87,909,310
JBrowse link
G C1ql2 complement C1q like 2 is_active_in ISO (PMID:27133466) RGD PMID:27133466 NCBI chr13:31,471,150...31,472,685
Ensembl chr13:31,471,150...31,472,689
JBrowse link
G C1ql3 complement C1q like 3 is_active_in ISO (PMID:27133466) RGD PMID:27133466 NCBI chr17:76,119,344...76,129,170
Ensembl chr17:76,119,447...76,128,530
JBrowse link
G Cbln1 cerebellin 1 precursor is_active_in IBA
ISO
GO_REF:0000033
(PMID:19250438)
GO_Central
RGD
PMID:19250438 GO_REF:0000033 NCBI chr19:19,608,763...19,612,572
Ensembl chr19:19,608,716...19,612,572
JBrowse link
G Cbln2 cerebellin 2 precursor is_active_in ISO (PMID:36205393) RGD PMID:36205393 NCBI chr18:79,940,412...79,948,766
Ensembl chr18:79,942,590...79,947,855
JBrowse link
G Cbln3 cerebellin 3 precursor located_in
is_active_in
IEA
ISO
GO_REF:0000118
(PMID:17331201)
TreeGrafter
RGD
PMID:17331201 GO_REF:0000118 NCBI chr15:29,362,014...29,364,523
Ensembl chr15:29,362,302...29,364,612
JBrowse link
G Cbln4 cerebellin 4 precursor is_active_in ISO (PMID:35544694) RGD PMID:35544694 NCBI chr 3:160,799,587...160,807,143
Ensembl chr 3:160,799,587...160,807,143
JBrowse link
G Cdh8 cadherin 8 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
(PMID:17392463)
Ensembl
GO_Central
TreeGrafter
RGD
PMID:17392463 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr19:5,494,038...5,901,810
Ensembl chr19:5,494,174...5,895,669
JBrowse link
G Dnm3 dynamin 3 IDA RGD PMID:17880892 RGD:8553820 NCBI chr13:74,359,043...74,838,135
Ensembl chr13:74,359,213...74,838,108
JBrowse link
G Egflam EGF-like, fibronectin type III and laminin G domains located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:56,301,945...56,476,665
Ensembl chr 2:56,302,566...56,476,298
JBrowse link
G Gria3 glutamate ionotropic receptor AMPA type subunit 3 IDA RGD PMID:17207780 RGD:1642304 NCBI chr  X:120,238,515...120,504,106
Ensembl chr  X:120,238,534...120,504,096
JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 IDA RGD PMID:17207780 RGD:1642304 NCBI chr 3:8,103,680...8,130,603
Ensembl chr 3:8,103,680...8,130,603
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B IDA RGD PMID:17207780 RGD:1642304 NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
JBrowse link
G Grip1 glutamate receptor interacting protein 1 IDA MMO:0000110 RGD PMID:26109571 RGD:152995513 NCBI chr 7:54,934,856...55,592,274
Ensembl chr 7:54,934,250...55,592,273
JBrowse link
G Lama2 laminin subunit alpha 2 is_active_in ISO (PMID:9396756) RGD PMID:9396756 NCBI chr 1:17,672,675...18,320,641
Ensembl chr 1:17,672,536...18,320,530
JBrowse link
G Lama4 laminin subunit alpha 4 is_active_in ISO (PMID:9396756) RGD PMID:9396756 NCBI chr20:42,392,268...42,533,347
Ensembl chr20:42,392,268...42,533,347
JBrowse link
G Lama5 laminin subunit alpha 5 is_active_in ISO (PMID:9396756) RGD PMID:9396756 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Lamb2 laminin subunit beta 2 located_in
is_active_in
IEA
ISO
GO_REF:0000107
(PMID:9396756)
Ensembl
RGD
PMID:9396756 GO_REF:0000107 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
JBrowse link
G Lamc1 laminin subunit gamma 1 is_active_in ISO (PMID:9396756) RGD PMID:9396756 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492
JBrowse link
G Lgi1 leucine-rich, glioma inactivated 1 is_active_in ISO (PMID:20133599) RGD PMID:20133599 NCBI chr 1:236,043,269...236,084,617
Ensembl chr 1:236,042,954...236,084,616
JBrowse link
G Msr1 macrophage scavenger receptor 1 located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:52,717,775...52,803,602
Ensembl chr16:52,717,732...52,799,676
JBrowse link
G Nlgn1 neuroligin 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464
JBrowse link
G Nptx1 neuronal pentraxin 1 is_active_in IDA PMID:29024665 SynGO PMID:29024665 RGD:13702141 NCBI chr10:104,811,107...104,820,358
Ensembl chr10:104,811,403...104,820,367
JBrowse link
G Nptx2 neuronal pentraxin 2 is_active_in IMP
IDA
PMID:10399937 SynGO PMID:10399937 PMID:10399937 RGD:13702159, RGD:13702159 NCBI chr12:10,037,435...10,048,345
Ensembl chr12:10,037,435...10,048,345
JBrowse link
G Nxph1 neurexophilin 1 is_active_in ISO (PMID:24639499) RGD PMID:24639499 NCBI chr 4:36,998,068...37,311,135
Ensembl chr 4:36,997,669...37,311,132
JBrowse link
G Prss12 serine protease 12 is_active_in
located_in
IBA
ISO
GO_REF:0000033
(PMID:18272678)
GO_Central
RGD
PMID:18272678 GO_REF:0000033 NCBI chr 2:211,624,134...211,684,126
Ensembl chr 2:211,624,134...211,684,126
JBrowse link
G Scara5 scavenger receptor class A, member 5 located_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr15:39,880,017...39,985,007
Ensembl chr15:39,880,035...39,983,373
JBrowse link
G Slc1a1 solute carrier family 1 member 1 located_in IDA PMID:10701825 ARUK-UCL PMID:10701825 RGD:21201260 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21254
    cellular anatomical entity 21098
      extracellular region 2692
        synaptic cleft 33
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