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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular structure organization
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Accession:GO:0043062 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.
Synonyms:exact_synonym: extracellular structure organisation;   extracellular structure organization and biogenesis

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basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936479:16,177,200...16,245,268
Ensembl chrNW_004936479:16,177,158...16,247,165 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936557:3,429,488...3,487,995
Ensembl chrNW_004936557:3,450,247...3,487,954 		JBrowse link
G Ntn4 netrin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936507:11,771,692...11,880,271
Ensembl chrNW_004936507:11,771,692...11,880,023 		JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467571) Ensembl
MGI		 PMID:16467571 GO_REF:0000107 NCBI chrNW_004936543:1,090,268...1,097,170
Ensembl chrNW_004936543:1,090,253...1,097,301 		JBrowse link
G Pxdn peroxidasin acts_upstream_of
involved_in		 ISO
IEA		 (PMID:32543734) UniProt
Ensembl		 PMID:32543734 GO_REF:0000107 NCBI chrNW_004936532:462,507...543,549
Ensembl chrNW_004936532:462,429...543,555 		JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,479,899...17,481,788
Ensembl chrNW_004936490:17,479,650...17,482,716 		JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctss cathepsin S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:963,176...991,732
Ensembl chrNW_004936580:963,153...991,442 		JBrowse link
G Hpn hepsin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:1,170,951...1,186,501
Ensembl chrNW_004936570:1,170,943...1,186,500 		JBrowse link
G LOC101958059 chymase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:59,118...61,993
Ensembl chrNW_004936722:59,880...62,014 		JBrowse link
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884617) Ensembl
MGI		 PMID:11884617 GO_REF:0000107 NCBI chrNW_004936589:2,504,235...2,536,778
Ensembl chrNW_004936589:2,504,224...2,537,170 		JBrowse link
G Cav2 caveolin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884617) Ensembl
MGI		 PMID:11884617 GO_REF:0000107 NCBI chrNW_004936589:2,553,932...2,561,186
Ensembl chrNW_004936589:2,552,477...2,561,569 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:8,886,494...8,923,921
Ensembl chrNW_004936506:8,886,494...8,923,930 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:2,416,043...2,543,561
Ensembl chrNW_004936472:2,416,566...2,542,814 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:25158062) MGI PMID:25158062 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Dag1 dystroglycan 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23217742) Ensembl
MGI		 PMID:23217742 GO_REF:0000107 NCBI chrNW_004936529:1,099,510...1,171,587
Ensembl chrNW_004936529:1,099,647...1,173,124 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26024086) Ensembl
MGI		 PMID:26024086 GO_REF:0000107 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Fermt1 FERM domain containing kindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:12,985,552...13,016,997
Ensembl chrNW_004936485:12,985,552...13,016,906 		JBrowse link
G Fkrp fukutin related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28039900) Ensembl
MGI		 PMID:28039900 GO_REF:0000107 NCBI chrNW_004936664:577,109...586,848
Ensembl chrNW_004936664:578,126...586,795 		JBrowse link
G Fktn fukutin acts_upstream_of_or_within ISO (PMID:29360985) MGI PMID:29360985 NCBI chrNW_004936559:6,612,318...6,680,690
Ensembl chrNW_004936559:6,619,531...6,670,727
Ensembl chrNW_004936559:6,619,531...6,670,727 		JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:13,372,889...13,457,586
Ensembl chrNW_004936488:13,373,030...13,457,300 		JBrowse link
G Fshr follicle stimulating hormone receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9811848) Ensembl
MGI		 PMID:9811848 GO_REF:0000107 NCBI chrNW_004936508:3,601,205...3,754,234
Ensembl chrNW_004936508:3,601,315...3,753,706 		JBrowse link
G Gas2 growth arrest specific 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27734842) Ensembl
MGI		 PMID:27734842 GO_REF:0000107 NCBI chrNW_004936654:3,326,557...3,448,930
Ensembl chrNW_004936654:3,326,511...3,448,872 		JBrowse link
G Hmcn1 hemicentin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:4,212,713...4,494,469
Ensembl chrNW_004936481:4,213,631...4,589,464 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:1,465,981...1,495,717
Ensembl chrNW_004936574:1,465,897...1,495,762 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12140558), (PMID:21970971) Ensembl
MGI		 PMID:12140558 PMID:21970971 GO_REF:0000107 NCBI chrNW_004936492:6,160,979...6,657,491
Ensembl chrNW_004936492:6,289,517...6,659,465 		JBrowse link
G Mmp11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
MGI		 PMID:18622425 GO_REF:0000107 NCBI chrNW_004936619:1,309,013...1,320,062
Ensembl chrNW_004936619:1,310,846...1,320,062 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:16436605) MGI PMID:16436605 NCBI chrNW_004936724:1,747,015...1,780,298
Ensembl chrNW_004936724:1,747,005...1,778,141 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chrNW_004936474:27,229,262...27,239,034
Ensembl chrNW_004936474:27,229,113...27,239,123 		JBrowse link
G Pomt2 protein O-mannosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chrNW_004936488:6,102,612...6,141,842
Ensembl chrNW_004936488:6,102,524...6,141,875 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Pxdn peroxidasin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:462,507...543,549
Ensembl chrNW_004936532:462,429...543,555 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21069829) Ensembl
MGI		 PMID:21069829 GO_REF:0000107 NCBI chrNW_004936888:57,212...62,722
Ensembl chrNW_004936888:56,811...63,776 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19592578) Ensembl
MGI		 PMID:19592578 GO_REF:0000107 NCBI chrNW_004936801:1,041,946...1,069,617
Ensembl chrNW_004936801:1,041,708...1,069,776 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:16186342) MGI PMID:16186342 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
biofilm matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101959956 cathepsin G-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:34,410...37,097
Ensembl chrNW_004936722:34,392...37,097 		JBrowse link
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chrNW_004936483:14,811,152...14,846,305
Ensembl chrNW_004936483:14,811,152...14,846,305 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:7,180,262...7,483,416
Ensembl chrNW_004936518:7,180,428...7,480,802 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11741898) Ensembl
MGI		 PMID:11741898 GO_REF:0000107 NCBI chrNW_004936521:7,951,176...8,025,666
Ensembl chrNW_004936521:7,952,365...8,025,614 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:2,567,433...2,823,087
Ensembl chrNW_004936504:2,567,552...2,821,576 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16556917) Ensembl
MGI		 PMID:16556917 GO_REF:0000107 NCBI chrNW_004936739:1,394,119...1,643,422
Ensembl chrNW_004936739:1,394,119...1,641,130 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:36,978,555...37,025,733
Ensembl chrNW_004936471:36,978,667...37,025,773 		JBrowse link
G Antxr2 ANTXR cell adhesion molecule 2 acts_upstream_of_or_within ISO (PMID:28604699) MGI PMID:28604699 NCBI chrNW_004936749:1,936,307...2,014,452
Ensembl chrNW_004936749:1,936,449...2,015,200 		JBrowse link
G Anxa2 annexin A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14702107) Ensembl
MGI		 PMID:14702107 GO_REF:0000107 NCBI chrNW_004936471:21,274,112...21,329,286
Ensembl chrNW_004936471:21,274,027...21,329,503 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:16338116)
(PMID:8096378)
(PMID:20889), (PMID:8895222)
(PMID:4808708)		 MGI PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17029294), (PMID:21467034)
(PMID:17029294), (PMID:17683922), (PMID:21467034), (PMID:3070812), (PMID:4100752), (PMID:4110409), (PMID:7859283)		 Ensembl
MGI		 PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... GO_REF:0000107 NCBI chrNW_004936730:466,912...680,823
Ensembl chrNW_004936730:468,039...680,753 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10581026), (PMID:11668593) Ensembl
TreeGrafter
MGI		 PMID:10581026 PMID:11668593 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:25,663,563...25,692,315
Ensembl chrNW_004936476:25,663,755...25,691,344 		JBrowse link
G Col14a1 collagen type XIV alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22906538) Ensembl
MGI		 PMID:22906538 GO_REF:0000107 NCBI chrNW_004936470:26,440,606...26,643,015
Ensembl chrNW_004936470:26,440,615...26,643,015 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,448,552...11,465,836
Ensembl chrNW_004936490:11,448,654...11,464,444 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936585:5,650,322...5,686,393
Ensembl chrNW_004936585:5,651,180...5,685,923 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11171689), (PMID:7590256), (PMID:9832566), (PMID:9915573)
(PMID:3070812), (PMID:7276808), (PMID:8989518)
(PMID:9022054)		 Ensembl
TreeGrafter
MGI		 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 PMID:9022054 More... GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:5,861,933...5,894,898
Ensembl chrNW_004936512:5,861,933...5,892,853 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9050868) Ensembl
MGI		 PMID:9050868 GO_REF:0000107 NCBI chrNW_004936506:8,886,494...8,923,921
Ensembl chrNW_004936506:8,886,494...8,923,930 		JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383546), (PMID:16492673), (PMID:17029294)
(PMID:17029294), (PMID:21467034)		 Ensembl
MGI		 PMID:15383546 PMID:16492673 PMID:17029294 PMID:21467034 GO_REF:0000107 NCBI chrNW_004936669:2,474,381...2,613,541
Ensembl chrNW_004936669:2,476,818...2,580,891 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:8,739,475...8,873,073
Ensembl chrNW_004936506:8,822,517...8,870,836 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:28604699)
(PMID:25158062)		 MGI PMID:25158062 PMID:28604699 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26746240)
(PMID:24312420)
(PMID:19808781)		 Ensembl
MGI		 PMID:19808781 PMID:24312420 PMID:26746240 GO_REF:0000107 NCBI chrNW_004936596:2,544,389...2,551,155
Ensembl chrNW_004936596:2,544,389...2,551,164 		JBrowse link
G Crtap cartilage associated protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936473:23,451,394...23,472,645
Ensembl chrNW_004936473:23,451,411...23,472,736 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936831:799,948...946,139
Ensembl chrNW_004936831:865,965...946,139 		JBrowse link
G Dpt dermatopontin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12230512), (PMID:16877395) Ensembl
TreeGrafter
MGI		 PMID:12230512 PMID:16877395 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936481:17,723,108...17,747,712
Ensembl chrNW_004936481:17,722,977...17,747,718 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:28106121) MGI
Ensembl		 PMID:28106121 GO_REF:0000107 NCBI chrNW_004936697:2,154,517...2,199,913
Ensembl chrNW_004936697:2,154,065...2,199,926 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19850926) Ensembl
MGI		 PMID:19850926 GO_REF:0000107 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28206698)
(PMID:24777781)		 Ensembl
MGI		 PMID:24777781 PMID:28206698 GO_REF:0000107 NCBI chrNW_004936490:16,712,843...16,720,438
Ensembl chrNW_004936490:16,712,761...16,720,499 		JBrowse link
G Fmod fibromodulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:1,271,401...1,282,651
Ensembl chrNW_004936567:1,271,252...1,282,841 		JBrowse link
G Foxc2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10767326) Ensembl
MGI		 PMID:10767326 GO_REF:0000107 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10660670) MGI PMID:10660670 NCBI chrNW_004936487:14,513,303...14,587,771
Ensembl chrNW_004936487:14,513,290...14,587,902 		JBrowse link
G LOC101970101 cytochrome P450 1B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936663:345,021...355,188
Ensembl chrNW_004936663:348,368...355,191 		JBrowse link
G Lox lysyl oxidase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:26700732) RGD
TreeGrafter
MGI
Ensembl		 PMID:16432278 PMID:16804742 PMID:26700732 GO_REF:0000107 GO_REF:0000118 RGD:1600668 RGD:1600669 NCBI chrNW_004936575:2,526,067...2,533,996
Ensembl chrNW_004936575:2,524,342...2,533,559 		JBrowse link
G Loxl1 lysyl oxidase like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,075,542...33,099,877
Ensembl chrNW_004936471:33,075,461...33,099,910 		JBrowse link
G Loxl2 lysyl oxidase like 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936555:6,781,563...6,865,662
Ensembl chrNW_004936555:6,781,321...6,865,768 		JBrowse link
G Loxl3 lysyl oxidase like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936556:745,798...765,926
Ensembl chrNW_004936556:745,798...765,918 		JBrowse link
G Loxl4 lysyl oxidase like 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:1,556,334...1,575,512
Ensembl chrNW_004936636:1,556,328...1,574,825 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO (PMID:20696843) MGI PMID:20696843 NCBI chrNW_004936613:2,019,815...2,083,724
Ensembl chrNW_004936613:2,019,783...2,084,267 		JBrowse link
G Mmp11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
MGI		 PMID:18622425 GO_REF:0000107 NCBI chrNW_004936619:1,309,013...1,320,062
Ensembl chrNW_004936619:1,310,846...1,320,062 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10383727) Ensembl
MGI		 PMID:10383727 GO_REF:0000107 NCBI chrNW_004936538:3,394,623...3,596,025
Ensembl chrNW_004936538:3,398,222...3,595,261 		JBrowse link
G Optc opticin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936567:1,142,994...1,152,311
Ensembl chrNW_004936567:1,142,428...1,152,717 		JBrowse link
G P3h1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within ISO (PMID:20363744) MGI PMID:20363744 NCBI chrNW_004936474:24,077,270...24,093,399
Ensembl chrNW_004936474:24,075,312...24,093,399 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:16,705,716...16,712,324
Ensembl chrNW_004936490:16,705,690...16,712,324 		JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17135260) Ensembl
MGI		 PMID:17135260 GO_REF:0000107 NCBI chrNW_004936521:5,981,205...6,045,195
Ensembl chrNW_004936521:5,981,079...6,047,499 		JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467571) Ensembl
MGI		 PMID:16467571 GO_REF:0000107 NCBI chrNW_004936543:1,090,268...1,097,170
Ensembl chrNW_004936543:1,090,253...1,097,301 		JBrowse link
G Pxdn peroxidasin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:462,507...543,549
Ensembl chrNW_004936532:462,429...543,555 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027)
(PMID:18802027)		 UniProt PMID:18802027 MGI:4413438 NCBI chrNW_004936470:7,966,096...7,972,379 JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:28106121) MGI
Ensembl		 PMID:28106121 GO_REF:0000107 NCBI chrNW_004936474:10,381,646...10,396,638
Ensembl chrNW_004936474:10,381,743...10,394,502 		JBrowse link
G Serpinf2 serpin family F member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,870,898...7,877,279
Ensembl chrNW_004936538:7,870,898...7,877,219 		JBrowse link
G Serpinh1 serpin family H member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10995453)
(PMID:22492985)		 Ensembl
TreeGrafter
MGI		 PMID:10995453 PMID:22492985 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:4,341,944...4,351,432
Ensembl chrNW_004936498:4,341,899...4,351,524 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19079247) Ensembl
MGI		 PMID:19079247 GO_REF:0000107 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA
ISS		 Ensembl
AgBase		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15993878) Ensembl
MGI		 PMID:15993878 GO_REF:0000107 NCBI chrNW_004936524:7,656,523...7,680,043
Ensembl chrNW_004936524:7,655,847...7,681,097 		JBrowse link
G Tnxb tenascin XB involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11925569)
(PMID:15194424)		 Ensembl
MGI		 PMID:11925569 PMID:15194424 GO_REF:0000107 NCBI chrNW_004936727:1,492,725...1,550,762
Ensembl chrNW_004936727:1,500,200...1,550,564 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27435297) Ensembl
MGI		 PMID:27435297 GO_REF:0000107 NCBI chrNW_004936488:6,247,329...6,277,494
Ensembl chrNW_004936488:6,247,296...6,277,506 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27435297) Ensembl
MGI		 PMID:27435297 GO_REF:0000107 NCBI chrNW_004936483:16,007,448...16,031,353
Ensembl chrNW_004936483:16,007,465...16,032,392 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004936641:1,193,085...1,205,283 JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:16338116)
(PMID:20889), (PMID:3385878), (PMID:937819)		 MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:8,886,494...8,923,921
Ensembl chrNW_004936506:8,886,494...8,923,930 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19855011) Ensembl
MGI		 PMID:19855011 GO_REF:0000107 NCBI chrNW_004936599:3,663,288...3,670,048
Ensembl chrNW_004936599:3,663,326...3,670,047 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,455,369...5,463,205
Ensembl chrNW_004936493:5,455,197...5,463,223 		JBrowse link
G Fbln5 fibulin 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936733:136,374...200,106
Ensembl chrNW_004936733:137,207...209,473 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23413430)
(PMID:12417550), (PMID:16192629)		 RGD
MGI
Ensembl		 PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000107 RGD:1600669 NCBI chrNW_004936575:2,526,067...2,533,996
Ensembl chrNW_004936575:2,524,342...2,533,559 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chrNW_004936661:2,919,444...2,945,847
Ensembl chrNW_004936661:2,919,550...2,945,599 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936881:369,161...372,628
Ensembl chrNW_004936881:368,877...373,974 		JBrowse link
G Myh11 myosin heavy chain 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:3,223,057...3,313,487
Ensembl chrNW_004936501:3,222,300...3,313,610 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19940141) Ensembl
MGI		 PMID:19940141 GO_REF:0000107 NCBI chrNW_004936471:31,002,241...31,213,057
Ensembl chrNW_004936471:30,654,136...31,207,266 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:15102077) UniProt PMID:15102077 NCBI chrNW_004936727:1,492,725...1,550,762
Ensembl chrNW_004936727:1,500,200...1,550,564 		JBrowse link
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chrNW_004936585:5,650,322...5,686,393
Ensembl chrNW_004936585:5,651,180...5,685,923 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:19114551) MGI PMID:19114551 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Eln elastin involved_in ISO (MGI:5142190|PMID:20576933) BHF-UCL PMID:20576933 MGI:5142190 NCBI chrNW_004936543:3,135,169...3,165,023 JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28774593) Ensembl
MGI		 PMID:28774593 GO_REF:0000107 NCBI chrNW_004936490:16,712,843...16,720,438
Ensembl chrNW_004936490:16,712,761...16,720,499 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chrNW_004936472:27,116...57,158
Ensembl chrNW_004936472:32,123...54,028 		JBrowse link
G Gpm6b glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:3,332,856...3,496,178
Ensembl chrNW_004936470:3,332,859...3,496,615 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO (PMID:20181608) MGI PMID:20181608 NCBI chrNW_004936580:5,792,421...5,811,096 JBrowse link
G Has1 hyaluronan synthase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004937026:125,622...132,141
Ensembl chrNW_004937026:125,881...135,235 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:25,418,069...25,443,332
Ensembl chrNW_004936470:25,418,063...25,444,634 		JBrowse link
G Has3 hyaluronan synthase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:19,270,788...19,282,922
Ensembl chrNW_004936475:19,270,830...19,282,907 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:8,975,818...9,013,684
Ensembl chrNW_004936481:8,975,790...9,013,723 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chrNW_004936475:18,667,563...18,755,132
Ensembl chrNW_004936475:18,671,428...18,755,208 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:20881014) Ensembl
MGI		 PMID:20881014 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISS
IEA		 AgBase
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272 		JBrowse link
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 ISO positive regulation RGD PMID:18613219 RGD:2314619 NCBI chrNW_004936560:42,561...45,748
Ensembl chrNW_004936560:42,537...45,807 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3 like 1 involved_in ISO (MGI:4438316|PMID:19767743)
(PMID:19767743)		 UniProt PMID:19767743 MGI:4438316 NCBI chrNW_004936562:2,739,908...2,772,484
Ensembl chrNW_004936562:2,739,905...2,772,484 		JBrowse link
G Eng endoglin ISO RGD PMID:15539634 RGD:1601032 NCBI chrNW_004936487:15,467,165...15,499,180
Ensembl chrNW_004936487:15,467,835...15,477,488 		JBrowse link
G Tmem38b transmembrane protein 38B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27188440) Ensembl
MGI		 PMID:27188440 GO_REF:0000107 NCBI chrNW_004936559:6,501,890...6,553,446
Ensembl chrNW_004936559:6,500,190...6,553,513 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004936641:1,193,085...1,205,283 JBrowse link
extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:1,935,780...1,960,888
Ensembl chrNW_004936572:1,936,529...1,960,800 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936640:857,565...899,355
Ensembl chrNW_004936640:858,322...898,182 		JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004936712:1,793,666...1,803,621
Ensembl chrNW_004936712:1,793,480...1,806,602 		JBrowse link
G Eng endoglin involved_in ISO (PMID:18223685) BHF-UCL PMID:18223685 NCBI chrNW_004936487:15,467,165...15,499,180
Ensembl chrNW_004936487:15,467,835...15,477,488 		JBrowse link
G Exoc8 exocyst complex component 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,403,458...19,407,202
Ensembl chrNW_004936484:19,403,458...19,405,197 		JBrowse link
G Flot1 flotillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:387,012...401,076
Ensembl chrNW_004936837:380,288...401,071 		JBrowse link
G Gsn gelsolin NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004936487:9,749,755...9,802,787
Ensembl chrNW_004936487:9,764,944...9,802,841 		JBrowse link
G Kif9 kinesin family member 9 involved_in ISO (PMID:21119006) UniProt PMID:21119006 NCBI chrNW_004936596:952,028...1,010,889 JBrowse link
G Klk4 kallikrein related peptidase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chrNW_004936889:583,259...586,412
Ensembl chrNW_004936889:583,302...586,412 		JBrowse link
G Klk5 kallikrein related peptidase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936889:609,807...616,777
Ensembl chrNW_004936889:610,172...617,088 		JBrowse link
G Lamc1 laminin subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,675,620...6,783,184
Ensembl chrNW_004936481:6,673,488...6,783,191 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936857:646,363...726,338
Ensembl chrNW_004936857:646,118...698,035 		JBrowse link
G LOC101958059 chymase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:59,118...61,993
Ensembl chrNW_004936722:59,880...62,014 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,040,084...5,050,384
Ensembl chrNW_004936551:5,040,084...5,050,384 		JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chrNW_004936551:5,310,426...5,352,883
Ensembl chrNW_004936551:5,310,426...5,352,883 		JBrowse link
G Noxo1 NADPH oxidase organizer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:2,054,429...2,060,098
Ensembl chrNW_004936694:2,057,836...2,059,891 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO (PMID:30659184) MGI PMID:30659184 NCBI chrNW_004936580:4,496,112...4,505,968
Ensembl chrNW_004936580:4,495,099...4,503,252 		JBrowse link
G Plg plasminogen involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:11,775,243...11,808,482
Ensembl chrNW_004936489:11,775,243...11,805,651 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936609:2,934,814...2,975,111
Ensembl chrNW_004936609:2,926,771...2,978,914 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO (PMID:24344185) UniProt PMID:24344185 NCBI chrNW_004936606:209,289...228,986 JBrowse link
G Wdr72 WD repeat domain 72 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26247047) Ensembl
MGI		 PMID:26247047 GO_REF:0000107 NCBI chrNW_004936471:15,233,828...15,416,415
Ensembl chrNW_004936471:15,233,840...15,416,415 		JBrowse link
extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936630:2,286,089...2,518,588
Ensembl chrNW_004936630:2,286,153...2,517,511 		JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936640:959,405...967,305
Ensembl chrNW_004936640:959,417...968,842 		JBrowse link
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif 10 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936588:5,337,519...5,356,978
Ensembl chrNW_004936588:5,337,877...5,354,848 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936518:7,180,262...7,483,416
Ensembl chrNW_004936518:7,180,428...7,480,802 		JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936669:3,449,259...3,478,471
Ensembl chrNW_004936669:3,456,494...3,478,512 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif 14 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936521:7,951,176...8,025,666
Ensembl chrNW_004936521:7,952,365...8,025,614 		JBrowse link
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936572:1,935,780...1,960,888
Ensembl chrNW_004936572:1,936,529...1,960,800 		JBrowse link
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936634:1,830,252...1,925,622
Ensembl chrNW_004936634:1,830,593...1,958,640 		JBrowse link
G Adamts17 ADAM metallopeptidase with thrombospondin type 1 motif 17 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936483:3,388,269...3,735,169
Ensembl chrNW_004936483:3,388,342...3,732,639 		JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936475:25,698,117...25,831,291
Ensembl chrNW_004936475:25,699,840...25,831,284 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936504:2,567,433...2,823,087
Ensembl chrNW_004936504:2,567,552...2,821,576 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936739:1,394,119...1,643,422
Ensembl chrNW_004936739:1,394,119...1,641,130 		JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18454205) Ensembl
TreeGrafter
MGI
InterPro		 PMID:18454205 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:1,942,902...2,088,122
Ensembl chrNW_004936512:1,943,196...2,088,122 		JBrowse link
G Adamts3 ADAM metallopeptidase with thrombospondin type 1 motif 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936598:2,680,623...2,901,308
Ensembl chrNW_004936598:2,680,087...2,901,330 		JBrowse link
G Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936903:490,718...500,443
Ensembl chrNW_004936903:491,139...500,443 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936640:857,565...899,355
Ensembl chrNW_004936640:858,322...898,182 		JBrowse link
G Adamts6 ADAM metallopeptidase with thrombospondin type 1 motif 6 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936480:3,798,044...3,965,203
Ensembl chrNW_004936480:3,675,805...3,965,210 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:36,978,555...37,025,733
Ensembl chrNW_004936471:36,978,667...37,025,773 		JBrowse link
G Adamts8 ADAM metallopeptidase with thrombospondin type 1 motif 8 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936572:1,978,642...1,999,411 JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936637:1,787,987...1,946,250
Ensembl chrNW_004936637:1,788,276...1,942,833 		JBrowse link
G Adamtsl1 ADAMTS like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936652:540,815...870,607
Ensembl chrNW_004936652:510,057...870,622 		JBrowse link
G Adamtsl2 ADAMTS like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25762570) Ensembl
TreeGrafter
MGI
InterPro		 PMID:25762570 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936669:3,363,991...3,397,099
Ensembl chrNW_004936669:3,363,867...3,397,402 		JBrowse link
G Adamtsl3 ADAMTS like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936483:18,191,568...18,523,988
Ensembl chrNW_004936483:18,193,198...18,522,028 		JBrowse link
G Adamtsl4 ADAMTS like 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:782,146...791,388
Ensembl chrNW_004936580:782,112...791,605 		JBrowse link
G Adamtsl5 ADAMTS like 5 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936588:810,880...817,636
Ensembl chrNW_004936588:810,234...817,656 		JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within ISO (PMID:9734405) MGI PMID:9734405 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004936842:452,682...476,533
Ensembl chrNW_004936842:452,681...476,513 		JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004936482:8,166,380...8,489,489 JBrowse link
G Aplp1 amyloid beta precursor like protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15385965) Ensembl
MGI		 PMID:15385965 GO_REF:0000107 NCBI chrNW_004936570:475,446...484,379
Ensembl chrNW_004936570:474,902...484,188 		JBrowse link
G Aplp2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004936572:2,205,527...2,277,786
Ensembl chrNW_004936572:2,205,478...2,277,842 		JBrowse link
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15385965) Ensembl
MGI		 PMID:15385965 GO_REF:0000107 NCBI chrNW_004936640:1,549,977...1,787,436
Ensembl chrNW_004936640:1,550,167...1,787,286 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:1115218) MGI PMID:1115218 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Atxn1l ataxin 1 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22014525) Ensembl
MGI		 PMID:22014525 GO_REF:0000107 NCBI chrNW_004936475:21,941,682...21,953,071
Ensembl chrNW_004936475:21,941,684...21,953,105 		JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900463) Ensembl
MGI		 PMID:11900463 GO_REF:0000107 NCBI chrNW_004936524:1,659,791...1,713,971
Ensembl chrNW_004936524:1,659,608...1,714,102 		JBrowse link
G Bcl3 BCL3 transcription coactivator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10586052) Ensembl
MGI		 PMID:10586052 GO_REF:0000107 NCBI chrNW_004936706:1,410,848...1,427,822
Ensembl chrNW_004936706:1,416,249...1,427,407 		JBrowse link
G Ccdc80 coiled-coil domain containing 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936536:294,650...330,875
Ensembl chrNW_004936536:293,549...330,998 		JBrowse link
G Ccn1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936608:152,174...155,123
Ensembl chrNW_004936608:151,838...155,358 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936730:466,912...680,823
Ensembl chrNW_004936730:468,039...680,753 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:25,663,563...25,692,315
Ensembl chrNW_004936476:25,663,755...25,691,344 		JBrowse link
G Col15a1 collagen type XV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:7,481,541...7,591,452
Ensembl chrNW_004936524:7,481,761...7,590,544 		JBrowse link
G Col17a1 collagen type XVII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936600:2,084,854...2,133,028
Ensembl chrNW_004936600:2,091,150...2,132,173 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15254016) MGI
TreeGrafter		 PMID:15254016 GO_REF:0000118 NCBI chrNW_004936778:847,473...943,038 JBrowse link
G Col19a1 collagen type XIX alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15302855) Ensembl
MGI		 PMID:15302855 GO_REF:0000107 NCBI chrNW_004936618:1,856,473...2,169,869
Ensembl chrNW_004936618:1,868,564...2,165,131 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:11,448,552...11,465,836
Ensembl chrNW_004936490:11,448,654...11,464,444 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936585:5,650,322...5,686,393
Ensembl chrNW_004936585:5,651,180...5,685,923 		JBrowse link
G Col24a1 collagen type XXIV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936865:473,968...814,756
Ensembl chrNW_004936865:474,340...814,819 		JBrowse link
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22206015) MGI
TreeGrafter		 PMID:22206015 GO_REF:0000118 NCBI chrNW_004936487:3,487,776...3,601,779 JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936585:2,390,383...2,547,859
Ensembl chrNW_004936585:2,390,414...2,546,366 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936506:8,886,494...8,923,921
Ensembl chrNW_004936506:8,886,494...8,923,930 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:2,416,043...2,543,561
Ensembl chrNW_004936472:2,416,566...2,542,814 		JBrowse link
G Col4a5 collagen type IV alpha 5 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:6,143,736...6,360,565
Ensembl chrNW_004936499:6,144,857...6,360,368 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10965041) Ensembl
TreeGrafter
MGI		 PMID:10965041 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936499:6,421,930...6,640,429
Ensembl chrNW_004936499:6,362,295...6,639,047 		JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936669:2,474,381...2,613,541
Ensembl chrNW_004936669:2,476,818...2,580,891 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936506:8,739,475...8,873,073
Ensembl chrNW_004936506:8,822,517...8,870,836 		JBrowse link
G Col5a3 collagen type V alpha 3 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:401,834...437,896
Ensembl chrNW_004936659:402,637...437,697 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:348,938...381,701 JBrowse link
G Col9a1 collagen type IX alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936618:2,176,328...2,260,000
Ensembl chrNW_004936618:2,176,240...2,260,000 		JBrowse link
G Col9a2 collagen type IX alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:22,081,672...22,095,997
Ensembl chrNW_004936474:22,081,858...22,095,921 		JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936473:2,877,543...2,941,374
Ensembl chrNW_004936473:2,877,568...2,939,840 		JBrowse link
G Crispld2 cysteine rich secretory protein LCCL domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936641:3,228,791...3,277,379
Ensembl chrNW_004936641:3,228,762...3,277,427 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21148564) Ensembl
MGI		 PMID:21148564 GO_REF:0000107 NCBI chrNW_004936555:3,639,459...3,807,483
Ensembl chrNW_004936555:3,637,630...3,807,488 		JBrowse link
G CUNH6orf15 chromosome unknown C6orf15 homolog acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004936837:781,958...783,112 JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI
InterPro		 PMID:18757743 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936905:419,478...427,335
Ensembl chrNW_004936905:420,354...427,324 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:21972064) MGI PMID:21972064 NCBI chrNW_004936797:332,962...377,397 JBrowse link
G Ecm2 extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936487:2,117,226...2,150,382
Ensembl chrNW_004936487:2,116,604...2,150,398 		JBrowse link
G Egfl6 EGF like domain multiple 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936470:3,156,593...3,215,039
Ensembl chrNW_004936470:3,156,518...3,215,990 		JBrowse link
G Egflam EGF like, fibronectin type III and laminin G domains involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936518:3,706,818...3,882,308
Ensembl chrNW_004936518:3,706,803...3,881,592 		JBrowse link
G Elf3 E74 like ETS transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11984530) Ensembl
MGI		 PMID:11984530 GO_REF:0000107 NCBI chrNW_004936567:2,494,645...2,500,361
Ensembl chrNW_004936567:2,494,505...2,499,601 		JBrowse link
G Eln elastin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004936543:3,135,169...3,165,023 JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936493:5,455,369...5,463,205
Ensembl chrNW_004936493:5,455,197...5,463,223 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9651581) Ensembl
MGI		 PMID:9651581 GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22981861) Ensembl
MGI		 PMID:22981861 GO_REF:0000107 NCBI chrNW_004936697:2,154,517...2,199,913
Ensembl chrNW_004936697:2,154,065...2,199,926 		JBrowse link
G Ero1b endoplasmic reticulum oxidoreductase 1 beta acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004936484:16,495,953...16,537,716
Ensembl chrNW_004936484:16,502,828...16,534,887 		JBrowse link
G Fbln1 fibulin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI
InterPro		 PMID:18757743 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936629:4,170,186...4,242,100
Ensembl chrNW_004936629:4,170,817...4,242,103 		JBrowse link
G Fbln2 fibulin 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936898:112,687...148,686 JBrowse link
G Fbln5 fibulin 5 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004936733:136,374...200,106
Ensembl chrNW_004936733:137,207...209,473 		JBrowse link
G Fkrp fukutin related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31296900) Ensembl
MGI		 PMID:31296900 GO_REF:0000107 NCBI chrNW_004936664:577,109...586,848
Ensembl chrNW_004936664:578,126...586,795 		JBrowse link
G Fn1 fibronectin 1 ISO RGD PMID:12388756 RGD:1358623 NCBI chrNW_004936586:1,708,803...1,773,372
Ensembl chrNW_004936586:1,708,684...1,773,383 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004943883:4...1,756 JBrowse link
G Foxf2 forkhead box F2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16439479) Ensembl
MGI		 PMID:16439479 GO_REF:0000107 NCBI chrNW_004936633:2,538,209...2,543,649
Ensembl chrNW_004936633:2,536,970...2,543,765 		JBrowse link
G Gfap glial fibrillary acidic protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11487638) Ensembl
MGI		 PMID:11487638 GO_REF:0000107 NCBI chrNW_004936541:1,265,915...1,275,232
Ensembl chrNW_004936541:1,265,436...1,275,296 		JBrowse link
G Gfod2 Gfo/Idh/MocA-like oxidoreductase domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:18,065,626...18,114,683
Ensembl chrNW_004936475:18,064,098...18,114,749 		JBrowse link
G Hpse2 heparanase 2 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25510506) Ensembl
TreeGrafter
MGI		 PMID:25510506 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936636:774,705...1,402,009
Ensembl chrNW_004936636:774,778...1,399,702 		JBrowse link
G Hsd17b12 hydroxysteroid 17-beta dehydrogenase 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936562:4,802,282...4,949,500
Ensembl chrNW_004936562:4,802,282...4,949,468 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chrNW_004936474:7,407,622...7,478,950
Ensembl chrNW_004936474:7,408,518...7,467,851 		JBrowse link
G Ibsp integrin binding sialoprotein involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:18757743) Ensembl
TreeGrafter
MGI
UniProt		 PMID:18757743 GO_REF:0000024 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936905:316,459...323,446
Ensembl chrNW_004936905:316,459...323,446 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:25410057) MGI PMID:25410057 NCBI chrNW_004936477:22,200,471...22,215,473
Ensembl chrNW_004936477:22,200,474...22,215,077 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32265257) Ensembl
MGI		 PMID:32265257 GO_REF:0000107 NCBI chrNW_004936788:1,258,547...1,401,910
Ensembl chrNW_004936788:1,268,614...1,401,998 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32265257) Ensembl
MGI		 PMID:32265257 GO_REF:0000107 NCBI chrNW_004936630:1,982,860...2,069,472
Ensembl chrNW_004936630:1,982,783...2,071,953 		JBrowse link
G Itga8 integrin subunit alpha 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10742111) Ensembl
MGI		 PMID:10742111 GO_REF:0000107 NCBI chrNW_004936574:5,985,181...6,155,067
Ensembl chrNW_004936574:5,984,939...6,155,164 		JBrowse link
G Itih1 inter-alpha-trypsin inhibitor heavy chain 1 acts_upstream_of_or_within ISO (PMID:17675295) MGI PMID:17675295 NCBI chrNW_004936473:3,534,071...3,548,554
Ensembl chrNW_004936473:3,533,819...3,548,411 		JBrowse link
G Kazald1 Kazal type serine peptidase inhibitor domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936600:4,625,909...4,633,163
Ensembl chrNW_004936600:4,628,277...4,632,792 		JBrowse link
G Lgals3 galectin 3 acts_upstream_of_or_within ISO (PMID:15800063) MGI PMID:15800063 NCBI chrNW_004936697:20,861...38,568
Ensembl chrNW_004936697:27,145...38,586 		JBrowse link
G LOC101957150 stromelysin-1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,137,801...5,145,934
Ensembl chrNW_004936551:5,137,801...5,145,934 		JBrowse link
G LOC101962956 collagen alpha-4(VI) chain-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,716,934...3,806,237 JBrowse link
G LOC101976665 nephrocan-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:664,616...679,163 JBrowse link
G Matn3 matrilin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,352,206...11,371,596
Ensembl chrNW_004936493:11,352,206...11,371,349 		JBrowse link
G Mia MIA SH3 domain containing acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11839810) MGI
TreeGrafter		 PMID:11839810 GO_REF:0000118 NCBI chrNW_004936661:3,047,735...3,049,050
Ensembl chrNW_004936661:3,047,747...3,049,064 		JBrowse link
G Mmp1 matrix metallopeptidase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,167,909...5,175,149
Ensembl chrNW_004936551:5,168,044...5,174,857 		JBrowse link
G Mmp10 matrix metallopeptidase 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,188,395...5,197,477 JBrowse link
G Mmp11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
TreeGrafter
MGI		 PMID:18622425 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936619:1,309,013...1,320,062
Ensembl chrNW_004936619:1,310,846...1,320,062 		JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,107,567...5,117,843
Ensembl chrNW_004936551:5,106,285...5,117,843 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,040,084...5,050,384
Ensembl chrNW_004936551:5,040,084...5,050,384 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:1,447,189...1,457,632
Ensembl chrNW_004936722:1,447,335...1,457,611 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:9,951,876...9,971,631
Ensembl chrNW_004936475:9,951,778...9,971,666 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:2,297,698...2,546,683
Ensembl chrNW_004936544:2,298,028...2,546,689 		JBrowse link
G Mmp17 matrix metallopeptidase 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,139,777...2,152,159
Ensembl chrNW_004936660:2,139,129...2,150,741 		JBrowse link
G Mmp19 matrix metallopeptidase 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:298,854...304,479
Ensembl chrNW_004936646:299,059...304,430 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936475:7,801,356...7,825,831
Ensembl chrNW_004936475:7,801,277...7,825,851 		JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,310,426...5,352,883
Ensembl chrNW_004936551:5,310,426...5,352,883 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:13,781,441...13,789,018
Ensembl chrNW_004936486:13,781,616...13,788,955 		JBrowse link
G Mmp23b matrix metallopeptidase 23B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936737:1,628,915...1,632,023
Ensembl chrNW_004936737:1,629,639...1,632,023 		JBrowse link
G Mmp24 matrix metallopeptidase 24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936561:5,479,107...5,501,559
Ensembl chrNW_004936561:5,478,145...5,502,529 		JBrowse link
G Mmp25 matrix metallopeptidase 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936694:1,118,432...1,128,315
Ensembl chrNW_004936694:1,118,670...1,128,261 		JBrowse link
G Mmp27 matrix metallopeptidase 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,253,762...5,262,426
Ensembl chrNW_004936551:5,253,762...5,262,426 		JBrowse link
G Mmp28 matrix metallopeptidase 28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:165,462...188,788
Ensembl chrNW_004936490:165,376...188,823 		JBrowse link
G Mmp7 matrix metallopeptidase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,388,456...5,395,071
Ensembl chrNW_004936551:5,388,459...5,395,071 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,228,950...5,238,948
Ensembl chrNW_004936551:5,228,950...5,238,948 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800063) Ensembl
TreeGrafter
MGI		 PMID:15800063 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:7,038,240...7,045,873
Ensembl chrNW_004936514:7,037,639...7,045,793 		JBrowse link
G Mpzl3 myelin protein zero like 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15482472) Ensembl
MGI		 PMID:15482472 GO_REF:0000107 NCBI chrNW_004936542:3,314,921...3,332,785
Ensembl chrNW_004936542:3,313,417...3,331,792 		JBrowse link
G Myf5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16554364) Ensembl
MGI		 PMID:16554364 GO_REF:0000107 NCBI chrNW_004936698:1,609,227...1,611,283
Ensembl chrNW_004936698:1,609,227...1,611,283 		JBrowse link
G Ndnf neuron derived neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936662:593,848...624,974
Ensembl chrNW_004936662:594,331...624,980 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16835260) Ensembl
MGI		 PMID:16835260 GO_REF:0000107 NCBI chrNW_004936538:3,394,623...3,596,025
Ensembl chrNW_004936538:3,398,222...3,595,261 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10586052) Ensembl
MGI		 PMID:10586052 GO_REF:0000107 NCBI chrNW_004936600:3,465,016...3,471,258
Ensembl chrNW_004936600:3,465,162...3,471,205 		JBrowse link
G Nid1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936484:16,621,666...16,691,304
Ensembl chrNW_004936484:16,621,601...16,691,313 		JBrowse link
G Nox1 NADPH oxidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16386251) Ensembl
MGI		 PMID:16386251 GO_REF:0000107 NCBI chrNW_004936584:6,023,960...6,040,041
Ensembl chrNW_004936584:6,024,008...6,039,866 		JBrowse link
G Nphp3 nephrocystin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7539536) Ensembl
MGI		 PMID:7539536 GO_REF:0000107 NCBI chrNW_004936529:6,013,321...6,048,249
Ensembl chrNW_004936529:6,009,301...6,049,447 		JBrowse link
G Npnt nephronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936814:1,096,604...1,165,755
Ensembl chrNW_004936814:1,095,974...1,165,866 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16424942) Ensembl
MGI		 PMID:16424942 GO_REF:0000107 NCBI chrNW_004936564:4,432,556...4,453,056
Ensembl chrNW_004936564:4,432,485...4,453,486 		JBrowse link
G Olfml2a olfactomedin like 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936487:12,999,818...13,031,539
Ensembl chrNW_004936487:12,999,901...13,027,760 		JBrowse link
G Olfml2b olfactomedin like 2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936831:169,866...210,974
Ensembl chrNW_004936831:169,864...211,315 		JBrowse link
G Papln papilin, proteoglycan like sulfated glycoprotein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:2,558,007...2,578,173
Ensembl chrNW_004936488:2,558,289...2,577,942 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15543606) Ensembl
MGI		 PMID:15543606 GO_REF:0000107 NCBI chrNW_004936482:16,804,129...16,853,539
Ensembl chrNW_004936482:16,807,569...16,853,587 		JBrowse link
G Pomt1 protein O-mannosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383666) Ensembl
MGI		 PMID:15383666 GO_REF:0000107 NCBI chrNW_004936487:18,249,472...18,267,875
Ensembl chrNW_004936487:18,249,472...18,267,256 		JBrowse link
G Postn periostin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16314533) Ensembl
TreeGrafter
MGI		 PMID:16314533 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936472:31,644,778...31,677,572
Ensembl chrNW_004936472:31,644,778...31,677,572 		JBrowse link
G Prdx4 peroxiredoxin 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22981861) Ensembl
MGI		 PMID:22981861 GO_REF:0000107 NCBI chrNW_004936624:859,281...873,784
Ensembl chrNW_004936624:859,276...873,860 		JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:14642275) MGI PMID:14642275 NCBI chrNW_004936470:10,379,855...10,578,531
Ensembl chrNW_004936470:10,379,872...10,578,543 		JBrowse link
G Ptx3 pentraxin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17675295) Ensembl
MGI		 PMID:17675295 GO_REF:0000107 NCBI chrNW_004936519:4,303,549...4,309,143
Ensembl chrNW_004936519:4,303,464...4,309,173 		JBrowse link
G Pxdn peroxidasin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:462,507...543,549
Ensembl chrNW_004936532:462,429...543,555 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11747814) Ensembl
TreeGrafter
MGI		 PMID:11747814 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:4,021,666...4,099,703
Ensembl chrNW_004936524:4,021,660...4,099,705 		JBrowse link
G Rxfp1 relaxin family peptide receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15256493) Ensembl
MGI		 PMID:15256493 GO_REF:0000107 NCBI chrNW_004936576:4,996,203...5,131,485
Ensembl chrNW_004936576:4,996,216...5,131,427 		JBrowse link
G Serac1 serine active site containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936489:9,911,484...9,983,826
Ensembl chrNW_004936489:9,918,785...9,983,840 		JBrowse link
G Serpinb5 serpin family B member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18593913) Ensembl
MGI		 PMID:18593913 GO_REF:0000107 NCBI chrNW_004936497:2,067,796...2,089,965
Ensembl chrNW_004936497:2,069,035...2,089,745 		JBrowse link
G Slc39a8 solute carrier family 39 member 8 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:29337306)
(MGI:6117959|PMID:29337306)		 UniProt
Ensembl		 PMID:29337306 GO_REF:0000107 MGI:6117959 NCBI chrNW_004936520:961,376...1,036,801
Ensembl chrNW_004936520:962,756...1,037,274 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:18267097) MGI PMID:18267097 NCBI chrNW_004936659:1,152,846...1,246,718
Ensembl chrNW_004936659:1,169,792...1,249,213 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004936495:13,056,851...13,215,581
Ensembl chrNW_004936495:13,056,766...13,215,620 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004936489:17,454,274...17,594,894
Ensembl chrNW_004936489:17,454,270...17,594,901 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17350610)
(PMID:24191021)		 Ensembl
MGI		 PMID:17350610 PMID:24191021 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17174946) Ensembl
TreeGrafter
MGI		 PMID:17174946 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:4,238,883...4,251,291
Ensembl chrNW_004936471:4,238,845...4,251,350 		JBrowse link
G Spock2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936521:6,799,823...6,823,917
Ensembl chrNW_004936521:6,800,440...6,822,445 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:11784073), (PMID:15528466) MGI PMID:11784073 PMID:15528466 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007 		JBrowse link
G Tgfbi transforming growth factor beta induced involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936597:3,128,007...3,161,885
Ensembl chrNW_004936597:3,127,795...3,162,242 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:31,002,241...31,213,057
Ensembl chrNW_004936471:30,654,136...31,207,266 		JBrowse link
G Tnf tumor necrosis factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15381731) Ensembl
MGI		 PMID:15381731 GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11b involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936470:27,571,263...27,598,725
Ensembl chrNW_004936470:27,571,270...27,599,089 		JBrowse link
G Tnr tenascin R involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10341229), (PMID:11077416), (PMID:16870730) Ensembl
MGI		 PMID:10341229 PMID:11077416 PMID:16870730 GO_REF:0000107 NCBI chrNW_004936481:12,586,460...12,972,348
Ensembl chrNW_004936481:12,787,536...12,965,327 		JBrowse link
G Tnxb tenascin XB involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15242785) Ensembl
MGI		 PMID:15242785 GO_REF:0000107 NCBI chrNW_004936727:1,492,725...1,550,762
Ensembl chrNW_004936727:1,500,200...1,550,564 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537898) Ensembl
MGI		 PMID:16537898 GO_REF:0000107 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
G Vit vitrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936663:1,402,713...1,508,253
Ensembl chrNW_004936663:1,403,128...1,484,353 		JBrowse link
G Vtn vitronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004936538:4,522,275...4,525,245
Ensembl chrNW_004936538:4,522,074...4,525,336 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19279005)
(PMID:18757743)		 Ensembl
MGI		 PMID:18757743 PMID:19279005 GO_REF:0000107 NCBI chrNW_004936737:1,733,837...1,738,861
Ensembl chrNW_004936737:1,733,854...1,738,792 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:35181734) MGI
Ensembl		 PMID:35181734 GO_REF:0000107 NCBI chrNW_004936471:15,233,828...15,416,415
Ensembl chrNW_004936471:15,233,840...15,416,415 		JBrowse link
G Wnt3a Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17943183) Ensembl
MGI		 PMID:17943183 GO_REF:0000107 NCBI chrNW_004936864:150,742...179,205
Ensembl chrNW_004936864:150,732...192,423 		JBrowse link
gene expression involved in extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:23900597) MGI PMID:23900597 NCBI chrNW_004936905:458,062...463,359
Ensembl chrNW_004936905:458,298...463,346 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO (PMID:30659184) MGI PMID:30659184 NCBI chrNW_004936580:4,496,112...4,505,968
Ensembl chrNW_004936580:4,495,099...4,503,252 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004936641:1,193,085...1,205,283 JBrowse link
glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a2 collagen type IV alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:2,270,836...2,416,324
Ensembl chrNW_004936472:2,270,819...2,416,349 		JBrowse link
G Col4a3 collagen type IV alpha 3 chain involved_in ISO (MGI:3610934|PMID:12631063) UniProt PMID:12631063 MGI:3610934 NCBI chrNW_004936525:8,642,744...8,774,975 JBrowse link
G Col4a4 collagen type IV alpha 4 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10534397) Ensembl
TreeGrafter
MGI		 PMID:10534397 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936525:8,788,753...8,899,671
Ensembl chrNW_004936525:8,795,436...8,899,149 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18480751) Ensembl
MGI		 PMID:18480751 GO_REF:0000107 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 involved_in ISO (MGI:3776221|PMID:16041630) UniProt PMID:16041630 MGI:3776221 NCBI chrNW_004936493:5,246,803...5,258,147
Ensembl chrNW_004936493:5,248,059...5,258,147 		JBrowse link
G Myo1e myosin IE involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:20,244,424...20,435,604
Ensembl chrNW_004936471:20,244,397...20,435,648 		JBrowse link
G Nid1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14566019) Ensembl
MGI		 PMID:14566019 GO_REF:0000107 NCBI chrNW_004936484:16,621,666...16,691,304
Ensembl chrNW_004936484:16,621,601...16,691,313 		JBrowse link
G Nphs1 NPHS1 adhesion molecule, nephrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:495,421...514,179
Ensembl chrNW_004936570:494,971...513,874 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936496:4,755,806...4,931,964
Ensembl chrNW_004936496:4,755,754...4,893,027 		JBrowse link
G Sulf2 sulfatase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:5,819,375...5,899,324
Ensembl chrNW_004936514:5,819,400...5,899,316 		JBrowse link
G Wt1 WT1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:5,411,949...5,459,693
Ensembl chrNW_004936533:5,411,848...5,459,693 		JBrowse link
intercellular bridge organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tex14 testis expressed 14, intercellular bridge forming factor involved_in ISO (MGI:3621609|PMID:16549803) UniProt PMID:16549803 MGI:3621609 NCBI chrNW_004936490:4,499,825...4,576,952 JBrowse link
metanephric glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16886065), (PMID:7670489) Ensembl
MGI		 PMID:7670489 PMID:16886065 GO_REF:0000107 NCBI chrNW_004936529:826,178...841,304
Ensembl chrNW_004936529:826,142...841,337 		JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:633,443...643,550
Ensembl chrNW_004936492:633,477...646,002 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,455,369...5,463,205
Ensembl chrNW_004936493:5,455,197...5,463,223 		JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25572963) Ensembl
MGI		 PMID:25572963 GO_REF:0000107 NCBI chrNW_004936491:13,288,986...13,516,878
Ensembl chrNW_004936491:13,288,717...13,516,984 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:25704091) BHF-UCL PMID:25704091 NCBI chrNW_004936602:1,230,907...1,368,588
Ensembl chrNW_004936602:1,230,907...1,304,743 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:7,154,125...7,340,218
Ensembl chrNW_004936537:7,175,516...7,336,895 		JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen dependent TFPI regulating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:1,332,682...1,389,242
Ensembl chrNW_004936534:1,332,625...1,389,572 		JBrowse link
G Notch1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:1,407,327...1,421,448
Ensembl chrNW_004936709:1,407,278...1,421,921 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:908,414...935,765
Ensembl chrNW_004936474:908,485...934,177 		JBrowse link
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpp4 dipeptidyl peptidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:16,979,220...17,062,198
Ensembl chrNW_004936469:16,979,410...17,061,159 		JBrowse link
G Fap fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:16,817,000...16,889,066
Ensembl chrNW_004936469:16,817,232...16,888,773 		JBrowse link
negative regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:16,817,000...16,889,066
Ensembl chrNW_004936469:16,817,232...16,888,773 		JBrowse link
polarized secretion of basement membrane proteins in epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936469:49,067,357...49,335,212
Ensembl chrNW_004936469:49,067,012...49,335,219 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936473:23,756,291...23,940,966
Ensembl chrNW_004936473:23,755,627...23,900,014 		JBrowse link
G Dag1 dystroglycan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,099,510...1,171,587
Ensembl chrNW_004936529:1,099,647...1,173,124 		JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004936542:3,639,992...3,688,000
Ensembl chrNW_004936542:3,639,982...3,688,450 		JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936834:592,688...791,533
Ensembl chrNW_004936834:592,584...793,386 		JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 involved_in ISO (PMID:27402836) UniProt PMID:27402836 NCBI chrNW_004936596:3,377,805...3,395,124 JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913)
(PMID:26178373), (PMID:26220971), (PMID:26711913)		 UniProt PMID:26178373 PMID:26220971 PMID:26711913 MGI:5660411 MGI:5695689 MGI:6158865 NCBI chrNW_004936599:3,663,288...3,670,048
Ensembl chrNW_004936599:3,663,326...3,670,047 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:1,596,227...1,746,706
Ensembl chrNW_004936565:1,597,593...1,746,846 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:17033827) ComplexPortal PMID:17033827 NCBI chrNW_004936727:1,492,725...1,550,762
Ensembl chrNW_004936727:1,500,200...1,550,564 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in
acts_upstream_of		 IEA
ISO		 (PMID:30729664) Ensembl
BHF-UCL		 PMID:30729664 GO_REF:0000107 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,455,369...5,463,205
Ensembl chrNW_004936493:5,455,197...5,463,223 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO RGD PMID:27488450 RGD:152995505 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Rgcc regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936667:232,807...245,131
Ensembl chrNW_004936667:232,782...245,131 		JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:30729664) Ensembl
BHF-UCL		 PMID:30729664 GO_REF:0000107 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20881014) Ensembl
MGI		 PMID:20881014 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in
acts_upstream_of		 IEA
ISO		 (MGI:5775885|PMID:24279830) Ensembl
BHF-UCL		 PMID:24279830 GO_REF:0000107 MGI:5775885 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:28251559) BHF-UCL
Ensembl		 PMID:28251559 GO_REF:0000107 NCBI chrNW_004936524:7,656,523...7,680,043
Ensembl chrNW_004936524:7,655,847...7,681,097 		JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:21419085 RGD:5129171 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:12,428,765...12,439,570
Ensembl chrNW_004936485:12,428,710...12,439,454 		JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:23369837 RGD:7243115 NCBI chrNW_004936857:577,067...609,855
Ensembl chrNW_004936857:577,585...626,267 		JBrowse link
G Rgcc regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936667:232,807...245,131
Ensembl chrNW_004936667:232,782...245,131 		JBrowse link
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carmil2 capping protein regulator and myosin 1 linker 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,036,233...18,049,144
Ensembl chrNW_004936475:18,035,994...18,049,129 		JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chrNW_004936469:49,067,357...49,335,212
Ensembl chrNW_004936469:49,067,012...49,335,219 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chrNW_004936473:23,756,291...23,940,966
Ensembl chrNW_004936473:23,755,627...23,900,014 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936831:799,948...946,139
Ensembl chrNW_004936831:865,965...946,139 		JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:609,894...619,417
Ensembl chrNW_004936765:609,861...619,456 		JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:26587789) ARUK-UCL PMID:26587789 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Meltf melanotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936833:853,925...875,069
Ensembl chrNW_004936833:853,007...875,547 		JBrowse link
G Pdpn podoplanin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:1,751,159...1,779,011
Ensembl chrNW_004936474:1,750,944...1,781,156 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:5688835|PMID:21984612) UniProt PMID:21984612 MGI:5688835 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007 		JBrowse link
positive regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO RGD PMID:19846571 RGD:8693597 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G Cflar CASP8 and FADD like apoptosis regulator ISO RGD PMID:24691542 RGD:11341715 NCBI chrNW_004936726:381,888...425,565
Ensembl chrNW_004936726:381,835...423,311 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:1,596,227...1,746,706
Ensembl chrNW_004936565:1,597,593...1,746,846 		JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:19,065,092...19,074,783
Ensembl chrNW_004936478:19,065,441...19,074,541 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:20951202) MGI PMID:20951202 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5776647|PMID:26690653) UniProt PMID:26690653 MGI:5776647 NCBI chrNW_004936599:3,663,288...3,670,048
Ensembl chrNW_004936599:3,663,326...3,670,047 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Has2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chrNW_004936470:25,418,069...25,443,332
Ensembl chrNW_004936470:25,418,063...25,444,634 		JBrowse link
G Notch1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:6370101|PMID:31319059)
(PMID:31319059)		 BHF-UCL
Ensembl		 PMID:31319059 GO_REF:0000107 MGI:6370101 NCBI chrNW_004936474:24,709,424...24,729,246
Ensembl chrNW_004936474:24,709,424...24,729,245 		JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:290,429...404,928
Ensembl chrNW_004936539:290,416...404,881 		JBrowse link
regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddr1 discoidin domain receptor tyrosine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:523,227...538,799
Ensembl chrNW_004936837:523,266...538,833 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:16738537 RGD:2313717 NCBI chrNW_004936572:3,728,971...3,795,612
Ensembl chrNW_004936572:3,730,327...3,795,625 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,388,394...1,397,731
Ensembl chrNW_004936597:1,385,624...1,397,758 		JBrowse link
regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20980600) Ensembl
MGI		 PMID:20980600 GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004936481:9,823,790...9,847,291
Ensembl chrNW_004936481:9,824,392...9,847,104 		JBrowse link
G Angptl7 angiopoietin like 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:224,836...230,682
Ensembl chrNW_004936474:224,576...230,711 		JBrowse link
G Axin2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,155,963...7,242,466
Ensembl chrNW_004936541:7,211,985...7,242,470 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22984613) Ensembl
MGI		 PMID:22984613 GO_REF:0000107 NCBI chrNW_004936541:2,822,789...2,871,069
Ensembl chrNW_004936541:2,815,738...2,871,035 		JBrowse link
G Lemd3 LEM domain containing 3 acts_upstream_of_or_within ISO (PMID:16943282) MGI PMID:16943282 NCBI chrNW_004936545:3,385,821...3,453,861
Ensembl chrNW_004936545:3,385,062...3,454,243 		JBrowse link
G Prdm5 PR/SET domain 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:388,279...524,803
Ensembl chrNW_004936662:390,894...516,485 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:4,021,666...4,099,703
Ensembl chrNW_004936524:4,021,660...4,099,705 		JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:26376865) ARUK-UCL
Ensembl		 PMID:26376865 GO_REF:0000107 NCBI chrNW_004936514:6,490,728...6,504,152
Ensembl chrNW_004936514:6,493,512...6,497,063 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:21780244) MGI PMID:21780244 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007 		JBrowse link
G Znf469 zinc finger protein 469 involved_in ISO (PMID:21664999) ARUK-UCL PMID:21664999 NCBI chrNW_004936641:1,193,085...1,205,283 JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16133
    cellular process 15768
      cellular component organization or biogenesis 6510
        cellular component organization 6313
          extracellular structure organization 312
            extracellular matrix organization + 311
            intercellular bridge organization + 1
paths to the root