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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular structure organization
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Accession:GO:0043062 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.
Synonyms:exact_synonym: extracellular structure organisation;   extracellular structure organization and biogenesis

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basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:21,771,617...21,843,888
Ensembl chrNW_004624739:21,771,226...21,843,884 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:2,320,168...2,378,349 JBrowse link
G Ntn4 netrin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:11,499,755...11,619,249
Ensembl chrNW_004624750:11,499,405...11,621,265 		JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (PMID:16467571) MGI PMID:16467571 NCBI chrNW_004624740:16,074,027...16,082,139
Ensembl chrNW_004624740:16,074,141...16,082,223 		JBrowse link
G Pxdn peroxidasin involved_in
acts_upstream_of		 ISO (PMID:25708780), (PMID:32571911)
(PMID:22842973)
(PMID:25708780), (PMID:27697841), (PMID:32571911)
(MGI:6870970|PMID:22842973)
(MGI:6109597|PMID:25708780), (MGI:6444560|PMID:32571911)
(PMID:32543734)		 UniProt PMID:22842973 PMID:25708780 PMID:27697841 PMID:32543734 PMID:32571911 MGI:6109597 MGI:6444560 MGI:6870970 NCBI chrNW_004624846:6,259,807...6,329,849
Ensembl chrNW_004624846:6,259,765...6,331,100 		JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473)
(PMID:18097473)		 UniProt PMID:18097473 MGI:3772552 NCBI chrNW_004624795:1,435,121...1,436,421 JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cma1 chymase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,021,965...8,024,763
Ensembl chrNW_004624820:8,021,959...8,024,851 		JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:22952693)
(MGI:5553237|PMID:22952693)		 BHF-UCL PMID:22952693 MGI:5553237 NCBI chrNW_004624772:18,421,905...18,446,857
Ensembl chrNW_004624772:18,419,736...18,438,786 		JBrowse link
G Hpn hepsin involved_in ISO (PMID:16908524) UniProt PMID:16908524 NCBI chrNW_004624794:8,426,005...8,439,758
Ensembl chrNW_004624794:8,421,791...8,439,782 		JBrowse link
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 acts_upstream_of_or_within ISO (PMID:11884617) MGI PMID:11884617 NCBI chrNW_004624827:2,844,855...2,878,367
Ensembl chrNW_004624827:2,844,115...2,879,179 		JBrowse link
G Cav2 caveolin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884617) Ensembl
MGI		 PMID:11884617 GO_REF:0000107 NCBI chrNW_004624827:2,897,824...2,905,835
Ensembl chrNW_004624827:2,897,731...2,905,911 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:22235340) MGI PMID:22235340 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:18160688), (PMID:19949034), (PMID:23065703) BHF-UCL PMID:18160688 PMID:19949034 PMID:23065703 NCBI chrNW_004624793:2,325,104...2,426,814
Ensembl chrNW_004624793:2,325,128...2,426,817 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25158062) Ensembl
MGI		 PMID:25158062 GO_REF:0000107 NCBI chrNW_004624745:31,125,136...31,140,126
Ensembl chrNW_004624745:31,125,265...31,139,318 		JBrowse link
G Dag1 dystroglycan 1 acts_upstream_of_or_within ISO (PMID:23217742) MGI PMID:23217742 NCBI chrNW_004624730:3,417,356...3,488,300
Ensembl chrNW_004624730:3,417,347...3,488,879 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26024086) MGI PMID:26024086 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
G Fermt1 FERM domain containing kindlin 1 involved_in ISO (MGI:5571208|PMID:24681597) CAFA PMID:24681597 MGI:5571208 NCBI chrNW_004624741:6,881,477...6,914,910
Ensembl chrNW_004624741:6,880,877...6,915,051 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:28039900) MGI PMID:28039900 NCBI chrNW_004624832:6,849,001...6,858,931
Ensembl chrNW_004624832:6,849,005...6,857,898 		JBrowse link
G Fktn fukutin acts_upstream_of_or_within ISO (PMID:29360985) MGI PMID:29360985 NCBI chrNW_004624758:5,750,804...5,877,797
Ensembl chrNW_004624758:5,792,514...5,877,709 		JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:16,587,367...16,674,998
Ensembl chrNW_004624734:16,587,357...16,676,063 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO (PMID:9811848) MGI PMID:9811848 NCBI chrNW_004624738:30,170,514...30,369,250
Ensembl chrNW_004624738:30,176,817...30,369,166 		JBrowse link
G Gas2 growth arrest specific 2 acts_upstream_of_or_within ISO (PMID:27734842) MGI PMID:27734842 NCBI chrNW_004624766:13,610,229...13,741,604
Ensembl chrNW_004624766:13,612,702...13,741,606 		JBrowse link
G Hmcn1 hemicentin 1 involved_in ISO (PMID:34504132)
(MGI:6762317|PMID:34504132)		 UniProt PMID:34504132 MGI:6762317 NCBI chrNW_004624814:7,423,844...7,844,890
Ensembl chrNW_004624814:7,424,937...7,730,917 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (MGI:5571208|PMID:24681597)
(PMID:24681597)		 CAFA PMID:24681597 MGI:5571208 NCBI chrNW_004624805:8,748,848...8,800,259
Ensembl chrNW_004624805:8,765,949...8,802,149 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:12140558), (PMID:21970971) MGI PMID:12140558 PMID:21970971 NCBI chrNW_004624750:1,190,712...1,524,051
Ensembl chrNW_004624750:1,286,336...1,527,159 		JBrowse link
G Mmp11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
MGI		 PMID:18622425 GO_REF:0000107 NCBI chrNW_004624747:10,398,167...10,408,397
Ensembl chrNW_004624747:10,398,130...10,408,376 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:16436605) MGI PMID:16436605 NCBI chrNW_004624877:3,293,980...3,328,337
Ensembl chrNW_004624877:3,292,244...3,328,660 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chrNW_004624906:2,120,759...2,131,024
Ensembl chrNW_004624906:2,119,684...2,135,656 		JBrowse link
G Pomt2 protein O-mannosyltransferase 2 acts_upstream_of_or_within ISO (PMID:21970971) MGI PMID:21970971 NCBI chrNW_004624734:24,595,748...24,636,845
Ensembl chrNW_004624734:24,595,702...24,636,937 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Pxdn peroxidasin involved_in ISO (MGI:5584206|PMID:24895407), (MGI:6114330|PMID:28424209) UniProt PMID:24895407 PMID:28424209 MGI:5584206 MGI:6114330 NCBI chrNW_004624846:6,259,807...6,329,849
Ensembl chrNW_004624846:6,259,765...6,331,100 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004624766:22,234,484...22,240,874
Ensembl chrNW_004624766:22,234,484...22,240,940 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004624794:11,738,137...11,765,579
Ensembl chrNW_004624794:11,738,487...11,769,117 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:16186342) MGI PMID:16186342 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chrNW_004624768:16,093,552...16,156,655 JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in ISO (PMID:29618652) MGI PMID:29618652 NCBI chrNW_004624759:20,749,548...21,092,816
Ensembl chrNW_004624759:20,898,761...21,088,838 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif 14 acts_upstream_of_or_within ISO (PMID:11741898) MGI PMID:11741898 NCBI chrNW_004624754:4,724,633...4,805,672
Ensembl chrNW_004624754:4,724,591...4,795,127 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in ISO (PMID:31844321) BHF-UCL PMID:31844321 NCBI chrNW_004624774:11,631,446...11,900,692
Ensembl chrNW_004624774:11,631,376...11,900,121 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 acts_upstream_of_or_within ISO (PMID:16556917) MGI PMID:16556917 NCBI chrNW_004624733:42,070,069...42,264,882
Ensembl chrNW_004624733:42,070,087...42,264,849 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in ISO (PMID:29618652) MGI PMID:29618652 NCBI chrNW_004624894:2,782,943...2,918,227
Ensembl chrNW_004624894:2,783,174...2,830,240 		JBrowse link
G Antxr2 ANTXR cell adhesion molecule 2 acts_upstream_of_or_within ISO (PMID:28604699) MGI PMID:28604699 NCBI chrNW_004624757:10,972,976...11,123,103
Ensembl chrNW_004624757:10,972,692...11,125,898 		JBrowse link
G Anxa2 annexin A2 acts_upstream_of_or_within ISO (PMID:14702107) MGI PMID:14702107 NCBI chrNW_004624781:11,781,893...11,820,440
Ensembl chrNW_004624781:11,781,886...11,821,816 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:20889), (PMID:8895222)
(PMID:16338116)
(PMID:8096378)
(PMID:4808708)		 MGI PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17029294), (PMID:17683922), (PMID:21467034), (PMID:3070812), (PMID:4100752), (PMID:4110409), (PMID:7859283)
(PMID:17029294), (PMID:21467034)		 MGI
Ensembl		 PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... GO_REF:0000107 NCBI chrNW_004624857:5,817,472...6,176,421
Ensembl chrNW_004624857:5,817,475...6,029,107 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10581026), (PMID:11668593) TreeGrafter
MGI		 PMID:10581026 PMID:11668593 GO_REF:0000118 NCBI chrNW_004624754:23,614,486...23,640,489
Ensembl chrNW_004624754:23,614,570...23,639,591 		JBrowse link
G Col14a1 collagen type XIV alpha 1 chain acts_upstream_of_or_within ISO (PMID:22906538) MGI PMID:22906538 NCBI chrNW_004624763:17,982,646...18,172,742
Ensembl chrNW_004624763:17,982,646...18,172,904 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391) UniProt PMID:14976317 PMID:15095409 PMID:17211858 PMID:18375391 NCBI chrNW_004624795:6,167,504...6,183,208
Ensembl chrNW_004624795:6,168,797...6,183,071 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624813:1,174,071...1,209,929
Ensembl chrNW_004624813:1,174,224...1,209,616 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO (PMID:9022054)
(PMID:11171689), (PMID:7590256), (PMID:9832566), (PMID:9915573)
(PMID:3070812), (PMID:7276808), (PMID:8989518)
(PMID:1429602)		 MGI
BHF-UCL		 PMID:1429602 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 More... NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:7546986), (PMID:9036918)
(PMID:29551664)
(PMID:9050868)
(PMID:20587693), (PMID:31655293)
(PMID:24820199)		 UniProt
MGI		 PMID:7546986 PMID:9036918 PMID:9050868 PMID:20587693 PMID:24820199 More... NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:11278977), (PMID:15095409), (PMID:9683580)
(PMID:15383546), (PMID:16492673), (PMID:17029294)
(PMID:17029294), (PMID:21467034)		 UniProt
MGI		 PMID:9683580 PMID:11278977 PMID:15095409 PMID:15383546 PMID:16492673 More... NCBI chrNW_004624760:2,593,923...2,713,772
Ensembl chrNW_004624760:2,593,961...2,713,772 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624899:1,035,797...1,175,394
Ensembl chrNW_004624899:1,035,964...1,174,844 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28604699)
(PMID:25158062)		 Ensembl
MGI		 PMID:25158062 PMID:28604699 GO_REF:0000107 NCBI chrNW_004624745:31,125,136...31,140,126
Ensembl chrNW_004624745:31,125,265...31,139,318 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO (PMID:26746240)
(PMID:19808781)
(PMID:24312420)		 MGI PMID:19808781 PMID:24312420 PMID:26746240 NCBI chrNW_004624908:1,870,975...1,877,434
Ensembl chrNW_004624908:1,871,002...1,877,369 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:5318020|PMID:19900459)
(PMID:19900459)		 UniProt PMID:19900459 MGI:5318020 NCBI chrNW_004624826:1,225,217...1,255,889
Ensembl chrNW_004624826:1,173,621...1,249,692 		JBrowse link
G Dpt dermatopontin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12230512), (PMID:16877395) MGI
TreeGrafter		 PMID:12230512 PMID:16877395 GO_REF:0000118 NCBI chrNW_004624826:6,628,059...6,656,064
Ensembl chrNW_004624826:6,627,947...6,656,151 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO (PMID:28106121) MGI PMID:28106121 NCBI chrNW_004624731:16,425,496...16,476,120
Ensembl chrNW_004624731:16,425,437...16,473,043 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:19850926) MGI PMID:19850926 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (PMID:24777781)
(PMID:28206698)		 MGI PMID:24777781 PMID:28206698 NCBI chrNW_004624795:1,936,714...1,942,667
Ensembl chrNW_004624795:1,937,173...1,942,483 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:10767326) MGI PMID:10767326 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:10767326) MGI PMID:10767326 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) BHF-UCL PMID:15539560 NCBI chrNW_004624804:1,606,182...1,620,932
Ensembl chrNW_004624804:1,608,757...1,620,938 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10660670) MGI PMID:10660670 NCBI chrNW_004624760:8,701,204...8,772,147
Ensembl chrNW_004624760:8,698,139...8,772,147 		JBrowse link
G LOC101701066 cytochrome P450 1B1 involved_in ISO (MGI:5544856|PMID:23979599) UniProt PMID:23979599 MGI:5544856 NCBI chrNW_004624738:19,639,215...19,647,807
Ensembl chrNW_004624738:19,638,456...19,647,497 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO (PMID:26700732) RGD
MGI		 PMID:16432278 PMID:16804742 PMID:26700732 RGD:1600668 RGD:1600669 NCBI chrNW_004624774:20,116,625...20,137,767
Ensembl chrNW_004624774:20,116,970...20,134,355 		JBrowse link
G Loxl1 lysyl oxidase like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624781:518,703...537,657
Ensembl chrNW_004624781:520,143...537,727 		JBrowse link
G Loxl2 lysyl oxidase like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:18,567,367...18,644,528
Ensembl chrNW_004624758:18,568,607...18,621,785 		JBrowse link
G Loxl3 lysyl oxidase like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:28,959,682...28,980,428
Ensembl chrNW_004624749:28,960,593...28,980,428 		JBrowse link
G Loxl4 lysyl oxidase like 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:9,834,297...9,854,654
Ensembl chrNW_004624737:9,835,932...9,854,588 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO (PMID:20696843) MGI PMID:20696843 NCBI chrNW_004624805:6,060,131...6,122,305
Ensembl chrNW_004624805:6,061,635...6,121,926 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18622425) MGI
Ensembl		 PMID:18622425 GO_REF:0000107 NCBI chrNW_004624747:10,398,167...10,408,397
Ensembl chrNW_004624747:10,398,130...10,408,376 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:10383727) MGI PMID:10383727 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576 		JBrowse link
G Optc opticin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:7,389,534...7,399,824 JBrowse link
G P3h1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within ISO (PMID:20363744) MGI PMID:20363744 NCBI chrNW_004624892:1,988,309...2,003,285
Ensembl chrNW_004624892:1,988,096...2,003,319 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624795:1,943,113...1,947,365
Ensembl chrNW_004624795:1,943,300...1,947,459 		JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 acts_upstream_of_or_within ISO (PMID:17135260) MGI PMID:17135260 NCBI chrNW_004624754:6,707,429...6,802,333
Ensembl chrNW_004624754:6,705,322...6,802,312 		JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (PMID:16467571) MGI PMID:16467571 NCBI chrNW_004624740:16,074,027...16,082,139
Ensembl chrNW_004624740:16,074,141...16,082,223 		JBrowse link
G Pxdn peroxidasin involved_in ISO (PMID:22842973) FlyBase PMID:22842973 NCBI chrNW_004624846:6,259,807...6,329,849
Ensembl chrNW_004624846:6,259,765...6,331,100 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:18802027)
(MGI:4413438|PMID:18802027)		 UniProt PMID:18802027 MGI:4413438 NCBI chrNW_004624735:12,579,963...12,583,128
Ensembl chrNW_004624735:12,579,956...12,581,736 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO (PMID:28106121) MGI PMID:28106121 NCBI chrNW_004624764:9,892,161...9,905,984
Ensembl chrNW_004624764:9,892,176...9,903,990 		JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (MGI:5306295|PMID:17958745)
(PMID:17958745)		 BHF-UCL PMID:17958745 MGI:5306295 NCBI chrNW_004624786:4,441,912...4,450,487
Ensembl chrNW_004624786:4,443,249...4,449,743 		JBrowse link
G Serpinh1 serpin family H member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10995453)
(PMID:22492985)		 TreeGrafter
MGI
Ensembl		 PMID:10995453 PMID:22492985 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624817:1,561,471...1,570,425
Ensembl chrNW_004624817:1,561,471...1,570,947 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19079247) Ensembl
MGI		 PMID:19079247 GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:15993878) MGI PMID:15993878 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within ISO (PMID:11925569)
(PMID:15194424)		 MGI PMID:11925569 PMID:15194424 NCBI chrNW_004624754:24,198,979...24,253,185 JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27435297) Ensembl
MGI		 PMID:27435297 GO_REF:0000107 NCBI chrNW_004624734:24,435,400...24,464,883
Ensembl chrNW_004624734:24,438,495...24,463,923 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated acts_upstream_of_or_within ISO (PMID:27435297) MGI PMID:27435297 NCBI chrNW_004624768:17,221,809...17,264,264
Ensembl chrNW_004624768:17,244,002...17,264,441 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004624746:1,043,117...1,074,776 JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:16338116)
(PMID:20889), (PMID:3385878), (PMID:937819)		 MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:24820199) MGI PMID:24820199 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:16478991), (PMID:20019329), (PMID:26178373), (PMID:26711913), (PMID:28508064)
(PMID:19855011)
(PMID:18973305), (PMID:27339457)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)		 UniProt
MGI		 PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 More... MGI:3619755 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chrNW_004624767:20,559,801...20,566,326
Ensembl chrNW_004624767:20,559,795...20,566,341 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:9,180,944...9,189,025
Ensembl chrNW_004624738:9,180,877...9,189,025 		JBrowse link
G Fbln5 fibulin 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:10,768,920...10,840,740
Ensembl chrNW_004624734:10,768,751...10,843,654 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO (PMID:23413430)
(PMID:12417550), (PMID:16192629)		 RGD
MGI		 PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 RGD:1600669 NCBI chrNW_004624774:20,116,625...20,137,767
Ensembl chrNW_004624774:20,116,970...20,134,355 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chrNW_004624925:543,656...572,810
Ensembl chrNW_004624925:545,438...573,428 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624849:5,661,916...5,665,290
Ensembl chrNW_004624849:5,661,920...5,664,970 		JBrowse link
G Myh11 myosin heavy chain 11 involved_in ISO (PMID:16444274) UniProt PMID:16444274 NCBI chrNW_004624782:270,183...373,711
Ensembl chrNW_004624782:270,731...354,838 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within ISO (PMID:19940141) MGI PMID:19940141 NCBI chrNW_004624781:2,217,668...2,793,867
Ensembl chrNW_004624781:2,217,684...2,411,072 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:15102077) UniProt PMID:15102077 NCBI chrNW_004624754:24,198,979...24,253,185 JBrowse link
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22910579) MGI
Ensembl		 PMID:22910579 GO_REF:0000107 NCBI chrNW_004624813:1,174,071...1,209,929
Ensembl chrNW_004624813:1,174,224...1,209,616 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19114551) Ensembl
MGI		 PMID:19114551 GO_REF:0000107 NCBI chrNW_004624745:31,125,136...31,140,126
Ensembl chrNW_004624745:31,125,265...31,139,318 		JBrowse link
G Eln elastin involved_in ISO (MGI:5142190|PMID:20576933) BHF-UCL PMID:20576933 MGI:5142190 NCBI chrNW_004624740:13,856,932...13,886,266 JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (PMID:28774593) MGI PMID:28774593 NCBI chrNW_004624795:1,936,714...1,942,667
Ensembl chrNW_004624795:1,937,173...1,942,483 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chrNW_004624793:385,846...410,934
Ensembl chrNW_004624793:385,812...410,934 		JBrowse link
G Gpm6b glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624882:220,267...374,912
Ensembl chrNW_004624882:220,362...374,912 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO (PMID:20181608) MGI PMID:20181608 NCBI chrNW_004624885:1,799,303...1,805,977
Ensembl chrNW_004624885:1,798,904...1,805,318 		JBrowse link
G Has1 hyaluronan synthase 1 involved_in ISO (MGI:5508296|PMID:10455188)
(PMID:10455188)		 UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004624832:3,327,626...3,341,928
Ensembl chrNW_004624832:3,329,920...3,336,290 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in IEA
ISS		 TreeGrafter
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624735:33,095,441...33,121,030
Ensembl chrNW_004624735:33,095,515...33,121,237 		JBrowse link
G Has3 hyaluronan synthase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:17,218,792...17,235,499 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:23867277) UniProt PMID:23867277 NCBI chrNW_004624771:449,761...490,372
Ensembl chrNW_004624771:449,992...489,693 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chrNW_004624746:17,857,779...17,948,469
Ensembl chrNW_004624746:17,920,835...17,948,468 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of ISO (PMID:20881014) MGI PMID:20881014 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in IEA
ISS		 Ensembl
AgBase		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605 		JBrowse link
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 ISO positive regulation RGD PMID:18613219 RGD:2314619 NCBI chrNW_004624753:6,022,033...6,024,866
Ensembl chrNW_004624753:6,023,069...6,024,833 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3 like 1 involved_in ISO (MGI:4438316|PMID:19767743)
(PMID:19767743)		 UniProt PMID:19767743 MGI:4438316 NCBI chrNW_004624767:2,215,850...2,247,470
Ensembl chrNW_004624767:2,215,558...2,247,509 		JBrowse link
G Eng endoglin ISO RGD PMID:15539634 RGD:1601032 NCBI chrNW_004624760:7,703,979...7,735,636
Ensembl chrNW_004624760:7,703,820...7,734,457 		JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO (PMID:27188440) MGI PMID:27188440 NCBI chrNW_004624758:5,664,287...5,720,061
Ensembl chrNW_004624758:5,662,661...5,719,865 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004624746:1,043,117...1,074,776 JBrowse link
extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in ISO (MGI:6508502|PMID:23233679)
(PMID:23233679)		 UniProt PMID:23233679 MGI:6508502 NCBI chrNW_004624812:4,814,753...4,839,843
Ensembl chrNW_004624812:4,814,644...4,839,944 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in ISO (MGI:6508502|PMID:23233679)
(PMID:23233679)		 UniProt PMID:23233679 MGI:6508502 NCBI chrNW_004624745:14,890,111...14,934,972
Ensembl chrNW_004624745:14,896,340...14,935,016 		JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004624749:17,706,582...17,764,087
Ensembl chrNW_004624749:17,723,715...17,746,346 		JBrowse link
G Cma1 chymase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:8,021,965...8,024,763
Ensembl chrNW_004624820:8,021,959...8,024,851 		JBrowse link
G Eng endoglin involved_in ISO (PMID:18223685) BHF-UCL PMID:18223685 NCBI chrNW_004624760:7,703,979...7,735,636
Ensembl chrNW_004624760:7,703,820...7,734,457 		JBrowse link
G Exoc8 exocyst complex component 8 involved_in ISO (PMID:24344185) UniProt PMID:24344185 NCBI chrNW_004624775:18,397,418...18,403,669
Ensembl chrNW_004624775:18,397,673...18,399,823 		JBrowse link
G Flot1 flotillin 1 involved_in ISO (PMID:21119006) UniProt PMID:21119006 NCBI chrNW_004624754:24,992,961...25,000,463
Ensembl chrNW_004624754:24,992,929...25,003,759 		JBrowse link
G Gsn gelsolin NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004624760:13,943,680...14,004,660
Ensembl chrNW_004624760:13,943,888...13,969,905 		JBrowse link
G Kif9 kinesin family member 9 involved_in ISO (PMID:21119006) UniProt PMID:21119006 NCBI chrNW_004624730:74,075,530...74,118,164
Ensembl chrNW_004624730:74,075,752...74,118,164 		JBrowse link
G Klk4 kallikrein related peptidase 4 acts_upstream_of_or_within ISO (PMID:22243248) MGI PMID:22243248 NCBI chrNW_004624832:3,828,676...3,832,025
Ensembl chrNW_004624832:3,828,679...3,831,767 		JBrowse link
G Lamc1 laminin subunit gamma 1 involved_in ISO (PMID:15159456) HGNC-UCL PMID:15159456 NCBI chrNW_004624814:10,572,026...10,701,805
Ensembl chrNW_004624814:10,570,356...10,701,977 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004624748:8,740,563...8,833,091
Ensembl chrNW_004624748:8,779,395...8,835,500 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624918:2,228,688...2,239,852 JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chrNW_004624878:277,569...320,093
Ensembl chrNW_004624878:277,558...320,093 		JBrowse link
G Noxo1 NADPH oxidase organizer 1 involved_in ISO (PMID:19755710) UniProt PMID:19755710 NCBI chrNW_004624913:280,502...282,723
Ensembl chrNW_004624913:279,130...282,790 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30659184) Ensembl
MGI		 PMID:30659184 GO_REF:0000107 NCBI chrNW_004624885:2,526,072...2,535,618
Ensembl chrNW_004624885:2,528,222...2,535,795 		JBrowse link
G Plg plasminogen involved_in ISO (PMID:14699093) BHF-UCL PMID:14699093 NCBI chrNW_004624855:2,362,793...2,401,519
Ensembl chrNW_004624855:2,360,229...2,402,079 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:19755710) UniProt PMID:19755710 NCBI chrNW_004624733:17,577,262...17,686,212
Ensembl chrNW_004624733:17,577,336...17,688,155 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO (PMID:24344185) UniProt PMID:24344185 NCBI chrNW_004624828:249,994...269,347 JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within ISO (PMID:26247047) MGI PMID:26247047 NCBI chrNW_004624731:7,186,570...7,365,900
Ensembl chrNW_004624731:7,205,335...7,367,112 		JBrowse link
extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624789:14,382,216...14,687,434
Ensembl chrNW_004624789:14,383,162...14,687,395 		JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624745:14,802,703...14,811,568
Ensembl chrNW_004624745:14,802,371...14,811,203 		JBrowse link
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif 10 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624828:1,308,920...1,327,528
Ensembl chrNW_004624828:1,308,604...1,326,282 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624759:20,749,548...21,092,816
Ensembl chrNW_004624759:20,898,761...21,088,838 		JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624760:1,865,474...1,889,394
Ensembl chrNW_004624760:1,865,376...1,889,203 		JBrowse link
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624812:4,814,753...4,839,843
Ensembl chrNW_004624812:4,814,644...4,839,944 		JBrowse link
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624751:3,112,602...3,248,643
Ensembl chrNW_004624751:3,116,256...3,247,679 		JBrowse link
G Adamts17 ADAM metallopeptidase with thrombospondin type 1 motif 17 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624768:4,308,993...4,630,499
Ensembl chrNW_004624768:4,309,035...4,629,289 		JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif 18 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624746:9,336,284...9,667,389
Ensembl chrNW_004624746:9,530,093...9,669,129 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624774:11,631,446...11,900,692
Ensembl chrNW_004624774:11,631,376...11,900,121 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624733:42,070,069...42,264,882
Ensembl chrNW_004624733:42,070,087...42,264,849 		JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18454205) Ensembl
MGI
TreeGrafter
InterPro		 PMID:18454205 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624816:9,004,691...9,208,434
Ensembl chrNW_004624816:9,004,905...9,208,545 		JBrowse link
G Adamts3 ADAM metallopeptidase with thrombospondin type 1 motif 3 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624890:3,738,727...3,925,377
Ensembl chrNW_004624890:3,738,186...3,925,491 		JBrowse link
G Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif 4 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624794:187,589...196,465
Ensembl chrNW_004624794:188,207...198,934 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624745:14,890,111...14,934,972
Ensembl chrNW_004624745:14,896,340...14,935,016 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624894:2,782,943...2,918,227
Ensembl chrNW_004624894:2,783,174...2,830,240 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624888:1,333,534...1,474,776
Ensembl chrNW_004624888:1,333,714...1,474,897 		JBrowse link
G Adamtsl2 ADAMTS like 2 acts_upstream_of_or_within ISO (PMID:25762570) MGI PMID:25762570 NCBI chrNW_004624760:1,948,302...1,977,459
Ensembl chrNW_004624760:1,949,907...1,976,894 		JBrowse link
G Adamtsl3 ADAMTS like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624768:19,337,770...19,692,425
Ensembl chrNW_004624768:19,339,106...19,691,905 		JBrowse link
G Adamtsl4 ADAMTS like 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624772:18,264,521...18,275,497
Ensembl chrNW_004624772:18,267,719...18,275,597 		JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within ISO (PMID:9734405) MGI PMID:9734405 NCBI chrNW_004624775:18,846,222...18,856,093
Ensembl chrNW_004624775:18,849,118...18,855,577 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004624817:7,913,541...7,937,945
Ensembl chrNW_004624817:7,909,468...7,936,487 		JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004624761:25,924,747...26,265,763
Ensembl chrNW_004624761:25,924,714...26,262,386 		JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004624794:10,148,575...10,158,101
Ensembl chrNW_004624794:10,148,522...10,167,543 		JBrowse link
G Aplp2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004624812:4,490,798...4,571,500
Ensembl chrNW_004624812:4,490,798...4,571,623 		JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15385965) MGI
Ensembl		 PMID:15385965 GO_REF:0000107 NCBI chrNW_004624745:13,904,912...14,159,374
Ensembl chrNW_004624745:13,902,577...14,159,372 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:1115218) MGI PMID:1115218 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452 		JBrowse link
G Atxn1l ataxin 1 like acts_upstream_of_or_within ISO (PMID:22014525) MGI PMID:22014525 NCBI chrNW_004624746:14,119,413...14,130,622
Ensembl chrNW_004624746:14,119,440...14,130,429 		JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within ISO (PMID:11900463) MGI PMID:11900463 NCBI chrNW_004624736:37,848,431...37,927,291
Ensembl chrNW_004624736:37,848,117...37,927,980 		JBrowse link
G Bcl3 BCL3 transcription coactivator acts_upstream_of_or_within ISO (PMID:10586052) MGI PMID:10586052 NCBI chrNW_004624907:1,656,803...1,666,774
Ensembl chrNW_004624907:1,656,783...1,667,575 		JBrowse link
G Ccdc80 coiled-coil domain containing 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624731:35,891,180...35,928,497
Ensembl chrNW_004624731:35,891,184...35,929,936 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624742:11,882,815...11,885,686
Ensembl chrNW_004624742:11,882,907...11,885,667 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624857:5,817,472...6,176,421
Ensembl chrNW_004624857:5,817,475...6,029,107 		JBrowse link
G Col15a1 collagen type XV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:1,939,685...2,041,575 JBrowse link
G Col16a1 collagen type XVI alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:14,895,811...14,942,644 JBrowse link
G Col17a1 collagen type XVII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624831:3,145,445...3,190,498
Ensembl chrNW_004624831:3,146,527...3,185,396 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain acts_upstream_of_or_within ISO (PMID:15254016) MGI PMID:15254016 NCBI chrNW_004624745:30,754,654...30,792,352
Ensembl chrNW_004624745:30,754,820...30,791,426 		JBrowse link
G Col19a1 collagen type XIX alpha 1 chain acts_upstream_of_or_within ISO (PMID:15302855) MGI PMID:15302855 NCBI chrNW_004624819:9,668,052...10,023,511
Ensembl chrNW_004624819:9,673,233...9,996,628 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624813:1,174,071...1,209,929
Ensembl chrNW_004624813:1,174,224...1,209,616 		JBrowse link
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO (PMID:22206015) MGI PMID:22206015 NCBI chrNW_004624760:20,861,505...20,979,826 JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624813:4,945,733...5,180,098
Ensembl chrNW_004624813:4,947,301...5,152,632 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624816:4,273,969...4,304,519
Ensembl chrNW_004624816:4,274,219...4,304,513 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain acts_upstream_of_or_within ISO (PMID:10965041) MGI PMID:10965041 NCBI chrNW_004624803:7,917,668...8,335,274 JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624899:1,035,797...1,175,394
Ensembl chrNW_004624899:1,035,964...1,174,844 		JBrowse link
G Col5a3 collagen type V alpha 3 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,216,179...2,254,868 JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:2,569,510...2,599,959 JBrowse link
G Col9a2 collagen type IX alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:22,782,027...22,796,401
Ensembl chrNW_004624764:22,782,027...22,795,767 		JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:5,162,989...5,222,140
Ensembl chrNW_004624822:5,163,506...5,222,134 		JBrowse link
G Crispld2 cysteine rich secretory protein LCCL domain containing 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624746:1,648,753...1,691,722
Ensembl chrNW_004624746:1,648,685...1,691,849 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO (PMID:21148564) MGI PMID:21148564 NCBI chrNW_004624758:15,200,726...15,517,146
Ensembl chrNW_004624758:15,200,713...15,367,236 		JBrowse link
G CUNH6orf15 chromosome unknown C6orf15 homolog acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624754:24,802,111...24,805,028 JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI
InterPro		 PMID:18757743 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624872:4,169,052...4,184,189
Ensembl chrNW_004624872:4,177,624...4,183,234 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:21972064) MGI PMID:21972064 NCBI chrNW_004624800:1,174,703...1,234,661
Ensembl chrNW_004624800:1,175,679...1,234,951 		JBrowse link
G Ecm2 extracellular matrix protein 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624868:3,840,598...3,886,074
Ensembl chrNW_004624868:3,840,109...3,888,356 		JBrowse link
G Egfl6 EGF like domain multiple 6 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624882:513,105...575,126
Ensembl chrNW_004624882:513,227...575,126 		JBrowse link
G Egflam EGF like, fibronectin type III and laminin G domains acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624759:16,488,906...16,658,332
Ensembl chrNW_004624759:16,488,798...16,658,428 		JBrowse link
G Elf3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (PMID:11984530) MGI PMID:11984530 NCBI chrNW_004624807:8,719,835...8,725,911 JBrowse link
G Eln elastin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624740:13,856,932...13,886,266 JBrowse link
G Emilin1 elastin microfibril interfacer 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
Ensembl		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004624738:9,180,944...9,189,025
Ensembl chrNW_004624738:9,180,877...9,189,025 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:9651581) MGI PMID:9651581 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004624731:16,425,496...16,476,120
Ensembl chrNW_004624731:16,425,437...16,473,043 		JBrowse link
G Ero1b endoplasmic reticulum oxidoreductase 1 beta acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004624775:14,265,523...14,355,311
Ensembl chrNW_004624775:14,265,769...14,330,032 		JBrowse link
G Fbln1 fibulin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
InterPro		 PMID:18757743 GO_REF:0000002 NCBI chrNW_004624752:4,109,478...4,189,987
Ensembl chrNW_004624752:4,109,478...4,190,066 		JBrowse link
G Fbln5 fibulin 5 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624734:10,768,920...10,840,740
Ensembl chrNW_004624734:10,768,751...10,843,654 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:31296900) MGI PMID:31296900 NCBI chrNW_004624832:6,849,001...6,858,931
Ensembl chrNW_004624832:6,849,005...6,857,898 		JBrowse link
G Fn1 fibronectin 1 ISO RGD PMID:12388756 RGD:1358623 NCBI chrNW_004624765:707,872...775,056
Ensembl chrNW_004624765:707,755...775,056 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802 		JBrowse link
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within ISO (PMID:11487638) MGI PMID:11487638 NCBI chrNW_004624795:395,298...400,781
Ensembl chrNW_004624795:394,436...401,231 		JBrowse link
G Gfod2 Gfo/Idh/MocA-like oxidoreductase domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
Ensembl
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624746:18,634,600...18,677,974
Ensembl chrNW_004624746:18,634,576...18,676,046 		JBrowse link
G Hpse2 heparanase 2 (inactive) acts_upstream_of_or_within ISO (PMID:25510506) MGI PMID:25510506 NCBI chrNW_004624737:10,055,408...10,976,525
Ensembl chrNW_004624737:10,058,787...10,976,525 		JBrowse link
G Hsd17b12 hydroxysteroid 17-beta dehydrogenase 12 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624767:4,163,452...4,315,827
Ensembl chrNW_004624767:4,160,053...4,316,370 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chrNW_004624764:6,639,152...6,736,161
Ensembl chrNW_004624764:6,640,087...6,708,130 		JBrowse link
G Ibsp integrin binding sialoprotein involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:18757743) TreeGrafter
MGI
UniProt
Ensembl		 PMID:18757743 GO_REF:0000024 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624872:4,324,812...4,333,080
Ensembl chrNW_004624872:4,322,330...4,333,080 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:25410057) MGI PMID:25410057 NCBI chrNW_004624755:26,151,302...26,169,324
Ensembl chrNW_004624755:26,154,186...26,169,365 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 acts_upstream_of_or_within ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004624819:3,002,718...3,030,007 JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004624789:15,056,692...15,184,385
Ensembl chrNW_004624789:15,060,525...15,175,617 		JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO (PMID:10742111) MGI PMID:10742111 NCBI chrNW_004624796:11,908,927...12,103,806
Ensembl chrNW_004624796:11,908,964...12,101,139 		JBrowse link
G Itih1 inter-alpha-trypsin inhibitor heavy chain 1 acts_upstream_of_or_within ISO (PMID:17675295) MGI PMID:17675295 NCBI chrNW_004624822:4,432,577...4,445,777
Ensembl chrNW_004624822:4,431,202...4,446,254 		JBrowse link
G Kazald1 Kazal type serine peptidase inhibitor domain 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624831:654,274...659,758
Ensembl chrNW_004624831:640,481...656,924 		JBrowse link
G Lgals3 galectin 3 acts_upstream_of_or_within ISO (PMID:15800063) MGI PMID:15800063 NCBI chrNW_004624731:14,300,138...14,307,843
Ensembl chrNW_004624731:14,298,201...14,304,637 		JBrowse link
G Matn3 matrilin 3 involved_in ISO (MGI:1353153|PMID:10660556) ComplexPortal PMID:10660556 MGI:1353153 NCBI chrNW_004624738:2,722,247...2,740,153
Ensembl chrNW_004624738:2,723,038...2,743,572 		JBrowse link
G Mia MIA SH3 domain containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11839810) TreeGrafter
MGI		 PMID:11839810 GO_REF:0000118 NCBI chrNW_004624925:691,195...696,696
Ensembl chrNW_004624925:694,173...696,696 		JBrowse link
G Mmp1 matrix metallopeptidase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:71,642...79,660
Ensembl chrNW_004624878:71,642...79,602 		JBrowse link
G Mmp10 matrix metallopeptidase 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:107,330...117,654
Ensembl chrNW_004624878:107,361...117,459 		JBrowse link
G Mmp11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) TreeGrafter
MGI
Ensembl		 PMID:18622425 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624747:10,398,167...10,408,397
Ensembl chrNW_004624747:10,398,130...10,408,376 		JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:6,017...17,368
Ensembl chrNW_004624878:6,035...17,445 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624918:2,228,688...2,239,852 JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:9,667,371...9,677,488
Ensembl chrNW_004624820:9,667,262...9,677,774 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:28,128,687...28,147,964
Ensembl chrNW_004624746:28,130,128...28,147,381 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:3,544,258...3,806,097
Ensembl chrNW_004624744:3,544,552...3,796,821 		JBrowse link
G Mmp19 matrix metallopeptidase 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:12,176,406...12,182,128
Ensembl chrNW_004624802:12,175,989...12,181,578 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624757:1,450,680...1,479,160
Ensembl chrNW_004624757:1,448,698...1,479,255 		JBrowse link
G Mmp20 matrix metallopeptidase 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:277,569...320,093
Ensembl chrNW_004624878:277,558...320,093 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:21,395,963...21,402,925
Ensembl chrNW_004624737:21,385,497...21,402,897 		JBrowse link
G Mmp24 matrix metallopeptidase 24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:4,133,323...4,159,501
Ensembl chrNW_004624842:4,131,523...4,160,134 		JBrowse link
G Mmp25 matrix metallopeptidase 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:787,159...803,765
Ensembl chrNW_004624824:791,236...804,591 		JBrowse link
G Mmp27 matrix metallopeptidase 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:180,919...190,525
Ensembl chrNW_004624878:180,939...190,271 		JBrowse link
G Mmp28 matrix metallopeptidase 28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:3,240,386...3,266,811
Ensembl chrNW_004624875:3,243,147...3,266,558 		JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:39,282...47,386
Ensembl chrNW_004624878:39,358...47,075 		JBrowse link
G Mmp7 matrix metallopeptidase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:345,038...364,986
Ensembl chrNW_004624878:345,038...361,652 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624878:124,396...174,584
Ensembl chrNW_004624878:164,171...175,654 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800063) TreeGrafter
MGI		 PMID:15800063 GO_REF:0000118 NCBI chrNW_004624790:8,584,399...8,591,763
Ensembl chrNW_004624790:8,583,457...8,591,713 		JBrowse link
G Mpzl3 myelin protein zero like 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15482472) Ensembl
MGI		 PMID:15482472 GO_REF:0000107 NCBI chrNW_004624784:13,651,217...13,670,413
Ensembl chrNW_004624784:13,650,650...13,670,372 		JBrowse link
G Myf5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16554364) Ensembl
MGI		 PMID:16554364 GO_REF:0000107 NCBI chrNW_004624837:33,735...36,052
Ensembl chrNW_004624837:33,864...35,837 		JBrowse link
G Ndnf neuron derived neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI
Ensembl		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624777:1,036,389...1,072,271
Ensembl chrNW_004624777:1,035,991...1,072,996 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:16835260) MGI PMID:16835260 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 acts_upstream_of_or_within ISO (PMID:10586052) MGI PMID:10586052 NCBI chrNW_004624831:1,804,050...1,810,309
Ensembl chrNW_004624831:1,803,917...1,810,187 		JBrowse link
G Nid1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004624775:14,486,357...14,563,341
Ensembl chrNW_004624775:14,486,145...14,563,447 		JBrowse link
G Nox1 NADPH oxidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16386251) Ensembl
MGI		 PMID:16386251 GO_REF:0000107 NCBI chrNW_004624902:1,741,921...1,754,932
Ensembl chrNW_004624902:1,736,704...1,755,504 		JBrowse link
G Nphp3 nephrocystin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7539536) Ensembl
MGI		 PMID:7539536 GO_REF:0000107 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624830:2,881,948...2,943,577
Ensembl chrNW_004624830:2,881,638...2,943,586 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:16424942) MGI PMID:16424942 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Olfml2a olfactomedin like 2A acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624760:10,356,950...10,386,053
Ensembl chrNW_004624760:10,361,778...10,379,949 		JBrowse link
G Olfml2b olfactomedin like 2B acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624826:440,584...477,986
Ensembl chrNW_004624826:440,026...478,037 		JBrowse link
G Papln papilin, proteoglycan like sulfated glycoprotein involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624734:28,142,603...28,174,734
Ensembl chrNW_004624734:28,145,501...28,171,720 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15543606) Ensembl
MGI		 PMID:15543606 GO_REF:0000107 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810 		JBrowse link
G Pomt1 protein O-mannosyltransferase 1 acts_upstream_of_or_within ISO (PMID:15383666) MGI PMID:15383666 NCBI chrNW_004624760:4,494,701...4,508,735
Ensembl chrNW_004624760:4,495,254...4,508,616 		JBrowse link
G Postn periostin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16314533) TreeGrafter
MGI
Ensembl		 PMID:16314533 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624920:542,479...575,760
Ensembl chrNW_004624920:540,750...575,855 		JBrowse link
G Prdx4 peroxiredoxin 4 acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004624897:92,977...112,920
Ensembl chrNW_004624897:95,521...112,920 		JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:14642275) MGI PMID:14642275 NCBI chrNW_004624735:15,356,911...15,713,219
Ensembl chrNW_004624735:15,461,178...15,714,071 		JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (PMID:17675295) MGI PMID:17675295 NCBI chrNW_004624730:35,125,536...35,131,645
Ensembl chrNW_004624730:35,125,605...35,131,367 		JBrowse link
G Pxdn peroxidasin involved_in ISO (MGI:3851833|PMID:19590037)
(PMID:19590037)		 UniProt PMID:19590037 MGI:3851833 NCBI chrNW_004624846:6,259,807...6,329,849
Ensembl chrNW_004624846:6,259,765...6,331,100 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11747814) TreeGrafter
MGI		 PMID:11747814 GO_REF:0000118 NCBI chrNW_004624868:4,604,157...4,713,838
Ensembl chrNW_004624868:4,603,955...4,713,652 		JBrowse link
G Rxfp1 relaxin family peptide receptor 1 acts_upstream_of_or_within ISO (PMID:15256493) MGI PMID:15256493 NCBI chrNW_004624848:10,648...115,474
Ensembl chrNW_004624848:10,918...115,310 		JBrowse link
G Serac1 serine active site containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004624785:82,120...155,103
Ensembl chrNW_004624785:82,155...146,457 		JBrowse link
G Serpinb5 serpin family B member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18593913) Ensembl
MGI		 PMID:18593913 GO_REF:0000107 NCBI chrNW_004624792:9,196,932...9,220,147
Ensembl chrNW_004624792:9,198,657...9,221,264 		JBrowse link
G Sftpd surfactant protein D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624841:6,917,067...6,938,594
Ensembl chrNW_004624841:6,916,849...6,936,077 		JBrowse link
G Slc39a8 solute carrier family 39 member 8 acts_upstream_of ISO (PMID:29337306)
(MGI:6117959|PMID:29337306)		 UniProt PMID:29337306 MGI:6117959 NCBI chrNW_004624830:5,514,595...5,573,250
Ensembl chrNW_004624830:5,514,780...5,574,894 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:18267097) MGI PMID:18267097 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624734:31,051,637...31,199,911
Ensembl chrNW_004624734:31,048,828...31,199,974 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624850:4,510,700...4,658,579
Ensembl chrNW_004624850:4,510,598...4,661,056 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:24191021)
(PMID:17350610)		 MGI PMID:17350610 PMID:24191021 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17174946) TreeGrafter
MGI		 PMID:17174946 GO_REF:0000118 NCBI chrNW_004624804:8,092,700...8,105,478
Ensembl chrNW_004624804:8,093,346...8,106,193 		JBrowse link
G Spock2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004624754:5,866,872...5,897,270
Ensembl chrNW_004624754:5,870,357...5,897,029 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:11784073), (PMID:15528466) MGI PMID:11784073 PMID:15528466 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643 		JBrowse link
G Tgfbi transforming growth factor beta induced involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624733:11,038,041...11,070,559
Ensembl chrNW_004624733:11,038,043...11,071,175 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624781:2,217,668...2,793,867
Ensembl chrNW_004624781:2,217,684...2,411,072 		JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO (PMID:15381731) MGI PMID:15381731 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531 		JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11b involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chrNW_004624763:17,139,109...17,166,398
Ensembl chrNW_004624763:17,138,847...17,166,453 		JBrowse link
G Tnr tenascin R involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10341229), (PMID:11077416), (PMID:16870730) Ensembl
MGI		 PMID:10341229 PMID:11077416 PMID:16870730 GO_REF:0000107 NCBI chrNW_004624771:6,291,202...6,725,737
Ensembl chrNW_004624771:6,519,091...6,717,947 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within ISO (PMID:15242785) MGI PMID:15242785 NCBI chrNW_004624754:24,198,979...24,253,185 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:16537898) MGI PMID:16537898 NCBI chrNW_004624731:5,350,912...5,359,286 JBrowse link
G Vit vitrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) TreeGrafter
MGI		 PMID:18757743 GO_REF:0000118 NCBI chrNW_004624738:18,339,587...18,448,639
Ensembl chrNW_004624738:18,358,372...18,447,689 		JBrowse link
G Vtn vitronectin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004624786:970,288...973,344
Ensembl chrNW_004624786:966,452...973,337 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 acts_upstream_of_or_within ISO (PMID:19279005)
(PMID:18757743)		 MGI PMID:18757743 PMID:19279005 NCBI chrNW_004624818:8,204,223...8,208,398
Ensembl chrNW_004624818:8,204,749...8,208,358 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within ISO (PMID:35181734) MGI PMID:35181734 NCBI chrNW_004624731:7,186,570...7,365,900
Ensembl chrNW_004624731:7,205,335...7,367,112 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:17943183) MGI PMID:17943183 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
gene expression involved in extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:23900597) MGI PMID:23900597 NCBI chrNW_004624872:4,096,001...4,102,392 JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30659184) Ensembl
MGI		 PMID:30659184 GO_REF:0000107 NCBI chrNW_004624885:2,526,072...2,535,618
Ensembl chrNW_004624885:2,528,222...2,535,795 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004624746:1,043,117...1,074,776 JBrowse link
glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a2 collagen type IV alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624793:2,201,815...2,325,002
Ensembl chrNW_004624793:2,202,244...2,324,507 		JBrowse link
G Col4a3 collagen type IV alpha 3 chain involved_in ISO (MGI:3610934|PMID:12631063) UniProt PMID:12631063 MGI:3610934 NCBI chrNW_004624843:1,557,756...1,623,936 JBrowse link
G Col4a4 collagen type IV alpha 4 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10534397) TreeGrafter
MGI		 PMID:10534397 GO_REF:0000118 NCBI chrNW_004624843:1,364,674...1,486,813
Ensembl chrNW_004624843:1,364,674...1,486,250 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:18480751) MGI PMID:18480751 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 involved_in ISO (MGI:3776221|PMID:16041630) UniProt PMID:16041630 MGI:3776221 NCBI chrNW_004624738:9,395,315...9,411,904
Ensembl chrNW_004624738:9,395,416...9,407,223 		JBrowse link
G Myo1e myosin IE involved_in ISO (MGI:4441423|PMID:19005011) UniProt PMID:19005011 MGI:4441423 NCBI chrNW_004624781:12,682,614...12,866,990
Ensembl chrNW_004624781:12,682,514...12,871,099 		JBrowse link
G Nid1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14566019) Ensembl
MGI		 PMID:14566019 GO_REF:0000107 NCBI chrNW_004624775:14,486,357...14,563,341
Ensembl chrNW_004624775:14,486,145...14,563,447 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:21,484,934...21,685,476
Ensembl chrNW_004624744:21,484,834...21,685,577 		JBrowse link
G Sulf2 sulfatase 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624790:7,129,863...7,228,406
Ensembl chrNW_004624790:7,129,815...7,228,454 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:19205749) UniProt PMID:19205749 NCBI chrNW_004624766:20,899,546...20,937,084
Ensembl chrNW_004624766:20,900,676...20,937,202 		JBrowse link
intercellular bridge organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101715712 inactive serine/threonine-protein kinase TEX14 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624871:578,323...679,120 JBrowse link
metanephric glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO (PMID:16886065), (PMID:7670489) MGI PMID:7670489 PMID:16886065 NCBI chrNW_004624730:3,145,643...3,158,781
Ensembl chrNW_004624730:3,145,643...3,159,101 		JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin like involved_in ISO (PMID:25451920) UniProt PMID:25451920 NCBI chrNW_004624752:7,284,344...7,293,815
Ensembl chrNW_004624752:7,283,639...7,289,531 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:9,180,944...9,189,025
Ensembl chrNW_004624738:9,180,877...9,189,025 		JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:25572963) MGI PMID:25572963 NCBI chrNW_004624762:4,051,479...4,377,237
Ensembl chrNW_004624762:4,128,127...4,377,278 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:25704091) BHF-UCL PMID:25704091 NCBI chrNW_004624956:84,673...207,176
Ensembl chrNW_004624956:83,842...149,481 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (PMID:30729664) BHF-UCL PMID:30729664 NCBI chrNW_004624742:5,871,155...6,080,773 JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen dependent TFPI regulating protein involved_in ISO (PMID:28341552) BHF-UCL PMID:28341552 NCBI chrNW_004624756:14,289,144...14,354,999
Ensembl chrNW_004624756:14,290,028...14,354,284 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:6158728|PMID:26491108)
(PMID:26491108)		 BHF-UCL PMID:26491108 MGI:6158728 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in ISO (MGI:6158728|PMID:26491108) BHF-UCL PMID:26491108 MGI:6158728 NCBI chrNW_004624860:3,111,244...3,123,041
Ensembl chrNW_004624860:3,111,630...3,122,711 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in ISO (MGI:6158728|PMID:26491108)
(PMID:26491108)		 BHF-UCL PMID:26491108 MGI:6158728 NCBI chrNW_004624818:894,470...922,806
Ensembl chrNW_004624818:896,150...922,710 		JBrowse link
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpp4 dipeptidyl peptidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:3,460,529...3,535,252
Ensembl chrNW_004624732:3,460,118...3,535,249 		JBrowse link
G Fap fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:3,273,339...3,346,207
Ensembl chrNW_004624732:3,275,025...3,345,977 		JBrowse link
negative regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:3,273,339...3,346,207
Ensembl chrNW_004624732:3,275,025...3,345,977 		JBrowse link
polarized secretion of basement membrane proteins in epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004624732:23,553,876...23,814,565
Ensembl chrNW_004624732:23,581,356...23,811,640 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004624788:11,441,840...11,657,515
Ensembl chrNW_004624788:11,441,747...11,573,029 		JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004624730:3,417,356...3,488,300
Ensembl chrNW_004624730:3,417,347...3,488,879 		JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004624784:14,016,774...14,064,069
Ensembl chrNW_004624784:14,016,587...14,065,905 		JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004624731:36,596,812...36,871,963
Ensembl chrNW_004624731:36,593,871...36,872,200 		JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 involved_in ISO (PMID:27402836) UniProt PMID:27402836 NCBI chrNW_004624908:497,898...510,128
Ensembl chrNW_004624908:497,524...509,832 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (PMID:26178373), (PMID:26220971), (PMID:26711913)
(MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913)		 UniProt PMID:26178373 PMID:26220971 PMID:26711913 MGI:5660411 MGI:5695689 MGI:6158865 NCBI chrNW_004624767:20,559,801...20,566,326
Ensembl chrNW_004624767:20,559,795...20,566,341 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO (PMID:29304157)
(MGI:6112863|PMID:29304157)		 BHF-UCL PMID:29304157 MGI:6112863 NCBI chrNW_004624748:6,358,588...6,533,217
Ensembl chrNW_004624748:6,358,180...6,533,249 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:17033827) ComplexPortal PMID:17033827 NCBI chrNW_004624754:24,198,979...24,253,185 JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen acts_upstream_of ISO (PMID:30729664) BHF-UCL PMID:30729664 NCBI chrNW_004624775:18,846,222...18,856,093
Ensembl chrNW_004624775:18,849,118...18,855,577 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:9,180,944...9,189,025
Ensembl chrNW_004624738:9,180,877...9,189,025 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO RGD PMID:27488450 RGD:152995505 NCBI chrNW_004624818:1,274,553...1,286,750
Ensembl chrNW_004624818:1,282,082...1,286,997 		JBrowse link
G Rgcc regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:13,710,901...13,722,951
Ensembl chrNW_004624748:13,710,044...13,722,917 		JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of		 ISO (PMID:21307346)
(PMID:30729664)		 BHF-UCL PMID:21307346 PMID:30729664 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20881014) MGI PMID:20881014 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5775885|PMID:24279830) BHF-UCL
Ensembl		 PMID:24279830 GO_REF:0000107 MGI:5775885 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of ISO (PMID:28251559) BHF-UCL PMID:28251559 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156 		JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:21419085 RGD:5129171 NCBI chrNW_004624775:18,846,222...18,856,093
Ensembl chrNW_004624775:18,849,118...18,855,577 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO (MGI:3640731|PMID:16730346)
(PMID:16730346)		 BHF-UCL PMID:16730346 MGI:3640731 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:23369837 RGD:7243115 NCBI chrNW_004624748:8,850,128...8,927,986
Ensembl chrNW_004624748:8,849,900...8,928,853 		JBrowse link
G Ier3ip1 immediate early response 3 interacting protein 1 involved_in ISO (PMID:33122427) UniProt PMID:33122427 NCBI chrNW_004624778:10,707,363...10,724,822
Ensembl chrNW_004624778:10,705,916...10,739,006 		JBrowse link
G Rgcc regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:13,710,901...13,722,951
Ensembl chrNW_004624748:13,710,044...13,722,917 		JBrowse link
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carmil2 capping protein regulator and myosin 1 linker 2 involved_in ISO (PMID:26466680), (PMID:26578515) UniProt PMID:26466680 PMID:26578515 NCBI chrNW_004624746:18,692,179...18,704,952
Ensembl chrNW_004624746:18,692,225...18,704,476 		JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chrNW_004624732:23,553,876...23,814,565
Ensembl chrNW_004624732:23,581,356...23,811,640 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chrNW_004624788:11,441,840...11,657,515
Ensembl chrNW_004624788:11,441,747...11,573,029 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:2158097|PMID:11723120) UniProt PMID:11723120 MGI:2158097 NCBI chrNW_004624826:1,225,217...1,255,889
Ensembl chrNW_004624826:1,173,621...1,249,692 		JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:28,038,216...28,047,252
Ensembl chrNW_004624740:28,036,731...28,047,364 		JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:26587789) ARUK-UCL PMID:26587789 NCBI chrNW_004624739:7,957,709...7,963,414
Ensembl chrNW_004624739:7,957,674...7,962,318 		JBrowse link
G Meltf melanotransferrin involved_in ISO (PMID:16713448) UniProt PMID:16713448 NCBI chrNW_004624730:61,967,868...61,990,576
Ensembl chrNW_004624730:61,971,877...61,988,902 		JBrowse link
G Pdpn podoplanin involved_in ISO (PMID:25486435) UniProt PMID:25486435 NCBI chrNW_004624764:163,370...192,770 JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:5688835|PMID:21984612)
(PMID:21984612)		 UniProt PMID:21984612 MGI:5688835 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643 		JBrowse link
positive regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO RGD PMID:19846571 RGD:8693597 NCBI chrNW_004624760:4,878,811...5,032,719
Ensembl chrNW_004624760:4,878,556...5,031,491 		JBrowse link
G Cflar CASP8 and FADD like apoptosis regulator ISO RGD PMID:24691542 RGD:11341715 NCBI chrNW_004624889:76,760...108,619
Ensembl chrNW_004624889:75,396...100,989 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO (MGI:6112863|PMID:29304157) BHF-UCL PMID:29304157 MGI:6112863 NCBI chrNW_004624748:6,358,588...6,533,217
Ensembl chrNW_004624748:6,358,180...6,533,249 		JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 involved_in ISO (PMID:29606302) UniProt PMID:29606302 NCBI chrNW_004624740:7,907,823...7,915,911
Ensembl chrNW_004624740:7,908,033...7,915,787 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20951202) MGI
Ensembl		 PMID:20951202 GO_REF:0000107 NCBI chrNW_004624745:31,125,136...31,140,126
Ensembl chrNW_004624745:31,125,265...31,139,318 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5776647|PMID:26690653) UniProt PMID:26690653 MGI:5776647 NCBI chrNW_004624767:20,559,801...20,566,326
Ensembl chrNW_004624767:20,559,795...20,566,341 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO (PMID:17416596) BHF-UCL PMID:17416596 NCBI chrNW_004624775:18,846,222...18,856,093
Ensembl chrNW_004624775:18,849,118...18,855,577 		JBrowse link
G Has2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chrNW_004624735:33,095,441...33,121,030
Ensembl chrNW_004624735:33,095,515...33,121,237 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:31319059)
(MGI:6370101|PMID:31319059)		 BHF-UCL
Ensembl		 PMID:31319059 GO_REF:0000107 MGI:6370101 NCBI chrNW_004624892:2,626,999...2,645,841
Ensembl chrNW_004624892:2,626,875...2,645,841 		JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:31932796) UniProt PMID:31932796 NCBI chrNW_004624736:10,161,772...10,337,585 JBrowse link
regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddr1 discoidin domain receptor tyrosine kinase 1 involved_in ISO (MGI:3629583|PMID:12065315)
(PMID:12065315)		 UniProt PMID:12065315 MGI:3629583 NCBI chrNW_004624754:24,881,439...24,905,633
Ensembl chrNW_004624754:24,880,496...24,896,995 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:16738537 RGD:2313717 NCBI chrNW_004624812:2,795,961...2,920,263
Ensembl chrNW_004624812:2,795,686...2,920,274 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 involved_in ISO (PMID:20876804) UniProt PMID:20876804 NCBI chrNW_004624733:12,964,893...12,979,198
Ensembl chrNW_004624733:12,964,746...12,976,732 		JBrowse link
regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004624760:4,878,811...5,032,719
Ensembl chrNW_004624760:4,878,556...5,031,491 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004624771:3,160,528...3,280,860
Ensembl chrNW_004624771:3,160,224...3,278,787 		JBrowse link
G Angptl7 angiopoietin like 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624818:1,620,741...1,626,704
Ensembl chrNW_004624818:1,619,790...1,626,474 		JBrowse link
G Axin2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22984613) Ensembl
MGI		 PMID:22984613 GO_REF:0000107 NCBI chrNW_004624849:1,895,378...1,952,755
Ensembl chrNW_004624849:1,895,914...1,952,665 		JBrowse link
G Prdm5 PR/SET domain 5 involved_in ISO (PMID:21664999) ARUK-UCL PMID:21664999 NCBI chrNW_004624777:675,215...893,125
Ensembl chrNW_004624777:676,965...893,047 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs involved_in ISO (PMID:18591254) BHF-UCL PMID:18591254 NCBI chrNW_004624868:4,604,157...4,713,838
Ensembl chrNW_004624868:4,603,955...4,713,652 		JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:26376865) ARUK-UCL PMID:26376865 NCBI chrNW_004624790:7,967,398...7,982,312
Ensembl chrNW_004624790:7,966,694...7,982,367 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:24038871) MGI PMID:24038871 NCBI chrNW_004624741:1,689,397...1,694,934
Ensembl chrNW_004624741:1,689,431...1,694,815 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:21780244) MGI PMID:21780244 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643 		JBrowse link
G Znf469 zinc finger protein 469 involved_in ISO (PMID:21664999) ARUK-UCL PMID:21664999 NCBI chrNW_004624746:1,043,117...1,074,776 JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15258
    cellular process 14889
      cellular component organization or biogenesis 6253
        cellular component organization 6063
          extracellular structure organization 299
            extracellular matrix organization + 298
            intercellular bridge organization + 1
paths to the root