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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular structure organization
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Accession:GO:0043062 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.
Synonyms:exact_synonym: extracellular structure organisation;   extracellular structure organization and biogenesis

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basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (PMID:16467571) MGI PMID:16467571 NCBI chrNW_004955456:16,082,424...16,090,773
Ensembl chrNW_004955456:16,082,437...16,093,389 		JBrowse link
G Pxdn peroxidasin involved_in
acts_upstream_of		 ISO (PMID:25708780), (PMID:27697841), (PMID:32571911)
(PMID:25708780), (PMID:32571911)
(PMID:22842973)
(MGI:6870970|PMID:22842973)
(MGI:6109597|PMID:25708780), (MGI:6444560|PMID:32571911)
(PMID:32543734)		 UniProt PMID:22842973 PMID:25708780 PMID:27697841 PMID:32543734 PMID:32571911 MGI:6109597 MGI:6444560 MGI:6870970 NCBI chrNW_004955487:4,867,427...4,936,454
Ensembl chrNW_004955487:4,867,427...4,936,522 		JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISO (MGI:3772552|PMID:18097473)
(PMID:18097473)		 UniProt PMID:18097473 MGI:3772552 NCBI chrNW_004955451:16,584,742...16,586,093 JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctss cathepsin S involved_in ISO (PMID:22952693)
(MGI:5553237|PMID:22952693)		 BHF-UCL PMID:22952693 MGI:5553237 NCBI chrNW_004955413:99,279...124,793
Ensembl chrNW_004955413:99,159...124,042 		JBrowse link
G Hpn hepsin involved_in ISO (PMID:16908524) UniProt PMID:16908524 NCBI chrNW_004955468:4,384,630...4,399,881
Ensembl chrNW_004955468:4,384,630...4,400,379 		JBrowse link
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 acts_upstream_of_or_within ISO (PMID:11884617) MGI PMID:11884617 NCBI chrNW_004955432:22,258,262...22,292,403
Ensembl chrNW_004955432:22,258,250...22,292,403 		JBrowse link
G Cav2 caveolin 2 acts_upstream_of_or_within ISO (PMID:11884617) MGI PMID:11884617 NCBI chrNW_004955432:22,240,041...22,242,200 JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:22235340) MGI PMID:22235340 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:18160688), (PMID:19949034), (PMID:23065703) BHF-UCL PMID:18160688 PMID:19949034 PMID:23065703 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:25158062) MGI PMID:25158062 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261 		JBrowse link
G Dag1 dystroglycan 1 acts_upstream_of_or_within ISO (PMID:23217742) MGI PMID:23217742 NCBI chrNW_004955532:1,446,553...1,465,310
Ensembl chrNW_004955532:1,397,900...1,466,312 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26024086) MGI PMID:26024086 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G Fermt1 FERM domain containing kindlin 1 involved_in ISO (MGI:5571208|PMID:24681597) CAFA PMID:24681597 MGI:5571208 NCBI chrNW_004955415:16,447,921...16,483,221
Ensembl chrNW_004955415:16,446,934...16,483,369 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:28039900) MGI PMID:28039900 NCBI chrNW_004955574:779,672...789,621
Ensembl chrNW_004955574:786,758...788,348 		JBrowse link
G Fktn fukutin acts_upstream_of_or_within ISO (PMID:29360985) MGI PMID:29360985 NCBI chrNW_004955419:20,933,662...20,994,793
Ensembl chrNW_004955419:20,933,662...20,994,793 		JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 involved_in ISO (MGI:4950310|PMID:21350012)
(PMID:21350012)		 UniProt PMID:21350012 MGI:4950310 NCBI chrNW_004955438:8,565,319...8,656,195
Ensembl chrNW_004955438:8,565,319...8,656,186 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO (PMID:9811848) MGI PMID:9811848 NCBI chrNW_004955441:15,422,190...15,585,446
Ensembl chrNW_004955441:15,422,190...15,585,537 		JBrowse link
G Gas2 growth arrest specific 2 acts_upstream_of_or_within ISO (PMID:27734842) MGI PMID:27734842 NCBI chrNW_004955476:3,092,461...3,226,269
Ensembl chrNW_004955476:3,100,479...3,226,262 		JBrowse link
G Hmcn1 hemicentin 1 involved_in ISO (MGI:6762317|PMID:34504132)
(PMID:34504132)		 UniProt PMID:34504132 MGI:6762317 NCBI chrNW_004955406:24,229,666...24,623,341
Ensembl chrNW_004955406:24,229,973...24,622,314 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (MGI:5571208|PMID:24681597)
(PMID:24681597)		 CAFA PMID:24681597 MGI:5571208 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:12140558), (PMID:21970971) MGI PMID:12140558 PMID:21970971 NCBI chrNW_004955405:41,891,430...42,225,066
Ensembl chrNW_004955405:41,931,058...42,139,608 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within ISO (PMID:18622425) MGI PMID:18622425 NCBI chrNW_004955455:8,458,622...8,464,037
Ensembl chrNW_004955455:8,459,428...8,469,053 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:16436605) MGI PMID:16436605 NCBI chrNW_004955467:2,422,181...2,456,925
Ensembl chrNW_004955467:2,423,659...2,457,307 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) acts_upstream_of_or_within ISO (PMID:21970971) MGI PMID:21970971 NCBI chrNW_004955464:12,076,815...12,086,961
Ensembl chrNW_004955464:12,077,406...12,086,700 		JBrowse link
G Pomt2 protein O-mannosyltransferase 2 acts_upstream_of_or_within ISO (PMID:21970971) MGI PMID:21970971 NCBI chrNW_004955438:1,179,064...1,218,860
Ensembl chrNW_004955438:1,179,064...1,218,860 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:33144400) MGI PMID:33144400 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Pxdn peroxidasin involved_in ISO (MGI:5584206|PMID:24895407), (MGI:6114330|PMID:28424209) UniProt PMID:24895407 PMID:28424209 MGI:5584206 MGI:6114330 NCBI chrNW_004955487:4,867,427...4,936,454
Ensembl chrNW_004955487:4,867,427...4,936,522 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO (PMID:21069829) MGI PMID:21069829 NCBI chrNW_004955476:11,827,004...11,833,495
Ensembl chrNW_004955476:11,827,004...11,833,162 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type 2 acts_upstream_of_or_within ISO (PMID:19592578) MGI PMID:19592578 NCBI chrNW_004955468:1,142,718...1,181,210
Ensembl chrNW_004955468:1,143,118...1,169,632 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:16186342) MGI PMID:16186342 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chrNW_004955416:16,125,536...16,186,046 JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in ISO (PMID:29618652) MGI PMID:29618652 NCBI chrNW_004955426:19,146,288...19,471,880
Ensembl chrNW_004955426:19,150,343...19,471,534 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif 14 acts_upstream_of_or_within ISO (PMID:11741898) MGI PMID:11741898 NCBI chrNW_004955437:20,592,278...20,664,075
Ensembl chrNW_004955437:20,593,739...20,664,075 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in ISO (PMID:31844321) BHF-UCL PMID:31844321 NCBI chrNW_004955415:2,384,530...2,617,454
Ensembl chrNW_004955415:2,384,530...2,617,780 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 acts_upstream_of_or_within ISO (PMID:16556917) MGI PMID:16556917 NCBI chrNW_004955408:1,157,826...1,367,146
Ensembl chrNW_004955408:1,157,740...1,367,146 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in ISO (PMID:29618652) MGI PMID:29618652 NCBI chrNW_004955450:525,313...581,006
Ensembl chrNW_004955450:529,999...577,621 		JBrowse link
G Antxr2 ANTXR cell adhesion molecule 2 acts_upstream_of_or_within ISO (PMID:28604699) MGI PMID:28604699 NCBI chrNW_004955433:4,212,729...4,345,611
Ensembl chrNW_004955433:4,212,729...4,345,066 		JBrowse link
G Anxa2 annexin A2 acts_upstream_of_or_within ISO (PMID:14702107) MGI PMID:14702107 NCBI chrNW_004955450:14,545,586...14,574,161
Ensembl chrNW_004955450:14,512,381...14,574,696 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:20889), (PMID:8895222)
(PMID:16338116)
(PMID:4808708)
(PMID:8096378)		 MGI PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO (PMID:17029294), (PMID:17683922), (PMID:21467034), (PMID:3070812), (PMID:4100752), (PMID:4110409), (PMID:7859283)
(PMID:17029294), (PMID:21467034)		 MGI PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... NCBI chrNW_004955435:7,352,617...7,545,235
Ensembl chrNW_004955435:7,352,617...7,545,235 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:9188673)
(PMID:10581026), (PMID:11668593)		 UniProt
MGI		 PMID:9188673 PMID:10581026 PMID:11668593 NCBI chrNW_004955437:1,739,426...1,767,087
Ensembl chrNW_004955437:1,740,402...1,766,490 		JBrowse link
G Col14a1 collagen type XIV alpha 1 chain acts_upstream_of_or_within ISO (PMID:22906538) MGI PMID:22906538 NCBI chrNW_004955417:25,579,547...25,774,067
Ensembl chrNW_004955417:25,579,547...25,774,127 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391) UniProt PMID:14976317 PMID:15095409 PMID:17211858 PMID:18375391 NCBI chrNW_004955451:11,468,156...11,484,410
Ensembl chrNW_004955451:11,468,290...11,483,073 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in ISO (PMID:17211858), (PMID:18375391) UniProt PMID:17211858 PMID:18375391 NCBI chrNW_004955432:11,127,961...11,164,145
Ensembl chrNW_004955432:11,128,112...11,163,302 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:1429602)
(PMID:11171689), (PMID:7590256), (PMID:9832566), (PMID:9915573)
(PMID:9022054)
(PMID:3070812), (PMID:7276808), (PMID:8989518)		 BHF-UCL
MGI		 PMID:1429602 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 More... NCBI chrNW_004955500:6,860,771...6,885,466
Ensembl chrNW_004955500:6,860,771...6,885,473 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:7546986), (PMID:9036918)
(PMID:29551664)
(PMID:9050868)
(PMID:24820199)
(PMID:20587693), (PMID:31655293)		 UniProt
MGI		 PMID:7546986 PMID:9036918 PMID:9050868 PMID:20587693 PMID:24820199 More... NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:11278977), (PMID:15095409), (PMID:9683580)
(PMID:17029294), (PMID:21467034)
(PMID:15383546), (PMID:16492673), (PMID:17029294)		 UniProt
MGI		 PMID:9683580 PMID:11278977 PMID:15095409 PMID:15383546 PMID:16492673 More... NCBI chrNW_004955513:3,533,612...3,660,605
Ensembl chrNW_004955513:3,533,614...3,658,161 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:9425231)
(PMID:15199158)
(MGI:3047505|PMID:15199158)		 UniProt PMID:9425231 PMID:15199158 MGI:3047505 NCBI chrNW_004955403:9,562,401...9,703,828
Ensembl chrNW_004955403:9,562,401...9,703,828 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:25158062)
(PMID:28604699)		 MGI PMID:25158062 PMID:28604699 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:5318020|PMID:19900459)
(PMID:19900459)		 UniProt PMID:19900459 MGI:5318020 NCBI chrNW_004955462:13,578,638...13,644,834
Ensembl chrNW_004955462:13,584,724...13,642,968 		JBrowse link
G Dpt dermatopontin acts_upstream_of_or_within ISO (PMID:12230512), (PMID:16877395) MGI PMID:12230512 PMID:16877395 NCBI chrNW_004955462:8,451,159...8,480,085
Ensembl chrNW_004955462:8,451,112...8,480,827 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO (PMID:28106121) MGI PMID:28106121 NCBI chrNW_004955409:10,495,892...10,533,383
Ensembl chrNW_004955409:10,502,554...10,530,376 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:19850926) MGI PMID:19850926 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (PMID:28206698)
(PMID:24777781)		 MGI PMID:24777781 PMID:28206698 NCBI chrNW_004955451:16,025,008...16,031,950
Ensembl chrNW_004955451:16,025,008...16,035,976 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) BHF-UCL PMID:15539560 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10660670) MGI PMID:10660670 NCBI chrNW_004955419:1,782,566...1,857,375
Ensembl chrNW_004955419:1,782,566...1,857,375 		JBrowse link
G LOC102009223 cytochrome P450 1B1 involved_in ISO (MGI:5544856|PMID:23979599) UniProt PMID:23979599 MGI:5544856 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO (PMID:26700732) RGD
MGI		 PMID:16432278 PMID:16804742 PMID:26700732 RGD:1600668 RGD:1600669 NCBI chrNW_004955521:178,290...193,926
Ensembl chrNW_004955521:185,792...193,926 		JBrowse link
G Loxl2 lysyl oxidase like 2 involved_in ISO (PMID:21835952) UniProt PMID:21835952 NCBI chrNW_004955403:46,503,226...46,583,807
Ensembl chrNW_004955403:46,504,440...46,584,016 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO (PMID:21606205) MGI PMID:21606205 NCBI chrNW_004955520:1,853,145...1,890,338
Ensembl chrNW_004955520:1,850,942...1,890,390 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO (PMID:20696843) MGI PMID:20696843 NCBI chrNW_004955462:1,564,739...1,631,613
Ensembl chrNW_004955462:1,564,191...1,631,951 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within ISO (PMID:18622425) MGI PMID:18622425 NCBI chrNW_004955455:8,458,622...8,464,037
Ensembl chrNW_004955455:8,459,428...8,469,053 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:10383727) MGI PMID:10383727 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179 		JBrowse link
G Optc opticin involved_in ISO (MGI:6148629|PMID:29323130) UniProt PMID:29323130 MGI:6148629 NCBI chrNW_004955406:39,446,875...39,458,571
Ensembl chrNW_004955406:39,445,677...39,453,906 		JBrowse link
G P3h1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within ISO (PMID:20363744) MGI PMID:20363744 NCBI chrNW_004955537:2,276,080...2,292,303
Ensembl chrNW_004955537:2,275,599...2,292,303 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) involved_in ISO (MGI:5779580|PMID:27119146)
(PMID:27119146)		 UniProt PMID:27119146 MGI:5779580 NCBI chrNW_004955451:16,020,101...16,024,063
Ensembl chrNW_004955451:16,020,101...16,024,084 		JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 acts_upstream_of_or_within ISO (PMID:17135260) MGI PMID:17135260 NCBI chrNW_004955437:18,604,525...18,668,800
Ensembl chrNW_004955437:18,604,525...18,668,800 		JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO (PMID:16467571) MGI PMID:16467571 NCBI chrNW_004955456:16,082,424...16,090,773
Ensembl chrNW_004955456:16,082,437...16,093,389 		JBrowse link
G Pxdn peroxidasin involved_in ISO (PMID:22842973) FlyBase PMID:22842973 NCBI chrNW_004955487:4,867,427...4,936,454
Ensembl chrNW_004955487:4,867,427...4,936,522 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027)
(PMID:18802027)		 UniProt PMID:18802027 MGI:4413438 NCBI chrNW_004955454:2,886,981...2,888,829
Ensembl chrNW_004955454:2,886,981...2,888,829 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO (PMID:28106121) MGI PMID:28106121 NCBI chrNW_004955452:5,295,716...5,311,113
Ensembl chrNW_004955452:5,296,035...5,309,102 		JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (MGI:5306295|PMID:17958745)
(PMID:17958745)		 BHF-UCL PMID:17958745 MGI:5306295 NCBI chrNW_004955481:1,441,262...1,449,078
Ensembl chrNW_004955481:1,442,010...1,449,242 		JBrowse link
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO (PMID:10995453)
(PMID:22492985)		 MGI PMID:10995453 PMID:22492985 NCBI chrNW_004955414:16,284,845...16,292,828
Ensembl chrNW_004955414:16,284,845...16,292,963 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (PMID:19079247) MGI PMID:19079247 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (PMID:16891397) BHF-UCL PMID:16891397 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:15993878) MGI PMID:15993878 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within ISO (PMID:15194424)
(PMID:11925569)		 MGI PMID:11925569 PMID:15194424 NCBI chrNW_004955437:516,713...561,188
Ensembl chrNW_004955437:511,963...553,856 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog acts_upstream_of_or_within ISO (PMID:27435297) MGI PMID:27435297 NCBI chrNW_004955438:1,320,862...1,351,344
Ensembl chrNW_004955438:1,321,845...1,347,535 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated acts_upstream_of_or_within ISO (PMID:27435297) MGI PMID:27435297 NCBI chrNW_004955416:15,049,849...15,071,108
Ensembl chrNW_004955416:15,048,106...15,071,102 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004955541:2,404,549...2,438,183 JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:16338116)
(PMID:20889), (PMID:3385878), (PMID:937819)		 MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:24820199) MGI PMID:24820199 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:18973305), (PMID:27339457)
(PMID:16478991), (PMID:20019329), (PMID:26178373), (PMID:26711913), (PMID:28508064)
(PMID:19855011)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)		 UniProt
MGI		 PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 More... MGI:3619755 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chrNW_004955422:19,463,090...19,470,605
Ensembl chrNW_004955422:19,463,987...19,470,605 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700)
(PMID:25056700)		 BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684 		JBrowse link
G Fbln5 fibulin 5 involved_in ISO (PMID:17035250)
(PMID:11805834), (PMID:11805835)
(MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834)		 UniProt
BHF-UCL		 PMID:11805834 PMID:11805835 PMID:17035250 MGI:2681470 MGI:2681471 NCBI chrNW_004955438:14,073,927...14,144,644
Ensembl chrNW_004955438:14,071,410...14,145,070 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within ISO (PMID:12417550), (PMID:16192629)
(PMID:23413430)		 RGD
MGI		 PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 RGD:1600669 NCBI chrNW_004955521:178,290...193,926
Ensembl chrNW_004955521:185,792...193,926 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chrNW_004955578:685,960...712,809
Ensembl chrNW_004955578:686,211...712,794 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chrNW_004955467:378,389...381,593
Ensembl chrNW_004955467:377,887...381,593 		JBrowse link
G Myh11 myosin heavy chain 11 involved_in ISO (PMID:16444274) UniProt PMID:16444274 NCBI chrNW_004955442:528,317...644,252
Ensembl chrNW_004955442:528,880...644,264 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within ISO (PMID:19940141) MGI PMID:19940141 NCBI chrNW_004955450:5,296,670...5,827,252
Ensembl chrNW_004955450:5,301,765...5,479,638 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:15102077) UniProt PMID:15102077 NCBI chrNW_004955437:516,713...561,188
Ensembl chrNW_004955437:511,963...553,856 		JBrowse link
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain acts_upstream_of_or_within ISO (PMID:22910579) MGI PMID:22910579 NCBI chrNW_004955432:11,127,961...11,164,145
Ensembl chrNW_004955432:11,128,112...11,163,302 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:19114551) MGI PMID:19114551 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261 		JBrowse link
G Eln elastin involved_in ISO (MGI:5142190|PMID:20576933) BHF-UCL PMID:20576933 MGI:5142190 NCBI chrNW_004955456:13,788,992...13,818,836 JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (PMID:28774593) MGI PMID:28774593 NCBI chrNW_004955451:16,025,008...16,031,950
Ensembl chrNW_004955451:16,025,008...16,035,976 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chrNW_004955404:276,397...303,864
Ensembl chrNW_004955404:275,946...304,809 		JBrowse link
G Gpm6b glycoprotein M6B involved_in ISO (PMID:21638316) UniProt PMID:21638316 NCBI chrNW_004955519:4,287,203...4,432,188
Ensembl chrNW_004955519:4,287,026...4,432,188 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within ISO (PMID:20181608) MGI PMID:20181608 NCBI chrNW_004955545:2,705,903...2,710,763
Ensembl chrNW_004955545:2,709,013...2,710,588 		JBrowse link
G Has1 hyaluronan synthase 1 involved_in ISO (MGI:5508296|PMID:10455188)
(PMID:10455188)		 UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004955558:826,853...836,809
Ensembl chrNW_004955558:826,853...836,809 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISO (MGI:5508296|PMID:10455188)
(PMID:10455188)		 UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004955540:593,316...609,760
Ensembl chrNW_004955540:593,316...609,865 		JBrowse link
G Has3 hyaluronan synthase 3 involved_in ISO (MGI:5508296|PMID:10455188) UniProt PMID:10455188 MGI:5508296 NCBI chrNW_004955484:7,542,286...7,570,108
Ensembl chrNW_004955484:7,542,286...7,570,684 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:19706528) MGI PMID:19706528 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:23867277) UniProt PMID:23867277 NCBI chrNW_004955406:19,363,938...19,402,134 JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (PMID:22910579) MGI PMID:22910579 NCBI chrNW_004955484:8,207,686...8,298,164
Ensembl chrNW_004955484:8,272,572...8,298,144 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of ISO (PMID:20881014) MGI PMID:20881014 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:19734317)
(MGI:4820704|PMID:19734317)		 BHF-UCL PMID:19734317 MGI:4820704 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 ISO positive regulation RGD PMID:18613219 RGD:2314619 NCBI chrNW_004955436:12,523,602...12,526,986
Ensembl chrNW_004955436:12,522,944...12,526,480 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3 like 1 involved_in ISO (MGI:4438316|PMID:19767743)
(PMID:19767743)		 UniProt PMID:19767743 MGI:4438316 NCBI chrNW_004955422:1,702,131...1,734,603
Ensembl chrNW_004955422:1,700,692...1,734,773 		JBrowse link
G Eng endoglin ISO RGD PMID:15539634 RGD:1601032 NCBI chrNW_004955419:818,797...853,319
Ensembl chrNW_004955419:818,932...852,694 		JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO (PMID:27188440) MGI PMID:27188440 NCBI chrNW_004955419:20,811,931...20,844,420
Ensembl chrNW_004955419:20,812,702...20,878,599 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004955541:2,404,549...2,438,183 JBrowse link
extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in ISO (MGI:6508502|PMID:23233679)
(PMID:23233679)		 UniProt PMID:23233679 MGI:6508502 NCBI chrNW_004955412:31,336,759...31,360,905
Ensembl chrNW_004955412:31,336,759...31,360,957 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in ISO (MGI:6508502|PMID:23233679)
(PMID:23233679)		 UniProt PMID:23233679 MGI:6508502 NCBI chrNW_004955407:26,597,165...26,643,972
Ensembl chrNW_004955407:26,603,479...26,643,103 		JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004955424:2,064,672...2,080,192
Ensembl chrNW_004955424:2,072,035...2,080,086 		JBrowse link
G Eng endoglin involved_in ISO (PMID:18223685) BHF-UCL PMID:18223685 NCBI chrNW_004955419:818,797...853,319
Ensembl chrNW_004955419:818,932...852,694 		JBrowse link
G Exoc8 exocyst complex component 8 involved_in ISO (PMID:24344185) UniProt PMID:24344185 NCBI chrNW_004955492:7,476,866...7,481,186
Ensembl chrNW_004955492:7,477,015...7,479,165 		JBrowse link
G Flot1 flotillin 1 involved_in ISO (PMID:21119006) UniProt PMID:21119006 NCBI chrNW_004955583:717,246...729,924
Ensembl chrNW_004955583:713,560...729,924 		JBrowse link
G Gsn gelsolin NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004955419:6,682,202...6,733,361
Ensembl chrNW_004955419:6,682,058...6,733,361 		JBrowse link
G Kif9 kinesin family member 9 involved_in ISO (PMID:21119006) UniProt PMID:21119006 NCBI chrNW_004955420:24,968,757...25,011,642
Ensembl chrNW_004955420:24,968,759...25,011,642 		JBrowse link
G Lamc1 laminin subunit gamma 1 involved_in ISO (PMID:15159456) HGNC-UCL PMID:15159456 NCBI chrNW_004955406:21,863,836...21,990,161
Ensembl chrNW_004955406:21,863,836...21,992,199 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chrNW_004955518:3,815,181...3,863,440
Ensembl chrNW_004955518:3,814,840...3,891,299 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO (PMID:8576151), (PMID:9065415)
(PMID:17987127)
(MGI:3771509|PMID:17987127)		 UniProt PMID:8576151 PMID:9065415 PMID:17987127 MGI:3771509 NCBI chrNW_004955412:6,106,994...6,118,760
Ensembl chrNW_004955412:6,106,994...6,118,760 		JBrowse link
G Mmp20 matrix metallopeptidase 20 acts_upstream_of_or_within ISO (PMID:22243248) MGI PMID:22243248 NCBI chrNW_004955412:5,815,450...5,869,016
Ensembl chrNW_004955412:5,815,450...5,869,016 		JBrowse link
G Noxo1 NADPH oxidase organizer 1 involved_in ISO (PMID:19755710) UniProt PMID:19755710 NCBI chrNW_004955442:15,288,495...15,290,601
Ensembl chrNW_004955442:15,288,602...15,290,418 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO (PMID:30659184) MGI PMID:30659184 NCBI chrNW_004955545:1,451,541...1,467,856
Ensembl chrNW_004955545:1,452,395...1,462,639 		JBrowse link
G Plg plasminogen involved_in ISO (PMID:14699093) BHF-UCL PMID:14699093 NCBI chrNW_004955439:20,317,814...20,366,724
Ensembl chrNW_004955439:20,317,552...20,366,475 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:19755710) UniProt PMID:19755710 NCBI chrNW_004955408:25,103,278...25,169,934
Ensembl chrNW_004955408:25,103,278...25,170,003 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within ISO (PMID:26247047) MGI PMID:26247047 NCBI chrNW_004955409:1,451,506...1,631,976
Ensembl chrNW_004955409:1,467,732...1,674,042 		JBrowse link
extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955427:2,362,403...2,581,970
Ensembl chrNW_004955427:2,363,536...2,581,853 		JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within ISO (PMID:18454205) MGI PMID:18454205 NCBI chrNW_004955500:2,688,281...2,850,667
Ensembl chrNW_004955500:2,689,717...2,850,667 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in ISO (MGI:4452308|PMID:20096780)
(PMID:20096780)		 BHF-UCL PMID:20096780 MGI:4452308 NCBI chrNW_004955517:1,302,560...1,443,708
Ensembl chrNW_004955517:1,302,922...1,440,245 		JBrowse link
G Adamtsl2 ADAMTS like 2 acts_upstream_of_or_within ISO (PMID:25762570) MGI PMID:25762570 NCBI chrNW_004955513:2,849,310...2,879,130
Ensembl chrNW_004955513:2,849,271...2,879,848 		JBrowse link
G Adamtsl4 ADAMTS like 4 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955413:258,078...269,324
Ensembl chrNW_004955413:257,915...269,325 		JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within ISO (PMID:9734405) MGI PMID:9734405 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004955414:22,121,867...22,137,849
Ensembl chrNW_004955414:22,117,470...22,137,849 		JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chrNW_004955443:6,513,762...6,786,247
Ensembl chrNW_004955443:6,513,980...6,783,014 		JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004955468:2,694,286...2,703,658
Ensembl chrNW_004955468:2,694,591...2,703,656 		JBrowse link
G Aplp2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004955412:31,043,320...31,075,617
Ensembl chrNW_004955412:31,043,320...31,075,617 		JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:1115218) MGI PMID:1115218 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393 		JBrowse link
G Atxn1l ataxin 1 like acts_upstream_of_or_within ISO (PMID:22014525) MGI PMID:22014525 NCBI chrNW_004955484:4,546,012...4,557,184
Ensembl chrNW_004955484:4,546,012...4,557,184 		JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within ISO (PMID:11900463) MGI PMID:11900463 NCBI chrNW_004955472:2,490,649...2,536,053
Ensembl chrNW_004955472:2,490,661...2,536,317 		JBrowse link
G Bcl3 BCL3 transcription coactivator acts_upstream_of_or_within ISO (PMID:10586052) MGI PMID:10586052 NCBI chrNW_004955555:1,898,280...1,911,466
Ensembl chrNW_004955555:1,856,250...1,911,466 		JBrowse link
G Ccdc80 coiled-coil domain containing 80 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955427:12,945,230...12,975,020
Ensembl chrNW_004955427:12,945,230...12,975,114 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955423:8,416,498...8,419,029
Ensembl chrNW_004955423:8,413,725...8,419,166 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain acts_upstream_of_or_within ISO (PMID:15254016) MGI PMID:15254016 NCBI chrNW_004955407:42,091,211...42,131,343
Ensembl chrNW_004955407:42,091,211...42,131,343 		JBrowse link
G Col19a1 collagen type XIX alpha 1 chain acts_upstream_of_or_within ISO (PMID:15302855) MGI PMID:15302855 NCBI chrNW_004955488:4,984,140...5,288,530
Ensembl chrNW_004955488:4,984,159...5,287,718 		JBrowse link
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO (PMID:22206015) MGI PMID:22206015 NCBI chrNW_004955419:13,289,006...13,411,118 JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:25330296)
(PMID:31655293)		 MGI PMID:25330296 PMID:31655293 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain acts_upstream_of_or_within ISO (PMID:10965041) MGI PMID:10965041 NCBI chrNW_004955490:7,409,687...7,764,300
Ensembl chrNW_004955490:7,409,160...7,762,929 		JBrowse link
G Crispld2 cysteine rich secretory protein LCCL domain containing 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955541:324,623...369,690
Ensembl chrNW_004955541:336,558...367,817 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO (PMID:21148564) MGI PMID:21148564 NCBI chrNW_004955403:43,178,520...43,347,121
Ensembl chrNW_004955403:43,178,520...43,478,885 		JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955474:2,188,090...2,200,284 JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:21972064) MGI PMID:21972064 NCBI chrNW_004955579:240,058...298,592
Ensembl chrNW_004955579:240,058...298,592 		JBrowse link
G Ecm2 extracellular matrix protein 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955515:5,273,277...5,308,709
Ensembl chrNW_004955515:5,283,725...5,307,749 		JBrowse link
G Egfl6 EGF like domain multiple 6 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955519:4,557,007...4,616,095
Ensembl chrNW_004955519:4,556,610...4,616,296 		JBrowse link
G Egflam EGF like, fibronectin type III and laminin G domains acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955426:22,856,515...23,030,517
Ensembl chrNW_004955426:22,856,186...23,031,029 		JBrowse link
G Elf3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (PMID:11984530) MGI PMID:11984530 NCBI chrNW_004955406:38,126,633...38,131,292
Ensembl chrNW_004955406:38,126,349...38,132,123 		JBrowse link
G Eln elastin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955456:13,788,992...13,818,836 JBrowse link
G Emilin1 elastin microfibril interfacer 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:9651581) MGI PMID:9651581 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004955409:10,495,892...10,533,383
Ensembl chrNW_004955409:10,502,554...10,530,376 		JBrowse link
G Ero1b endoplasmic reticulum oxidoreductase 1 beta acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004955492:3,845,406...3,911,671
Ensembl chrNW_004955492:3,845,626...3,908,868 		JBrowse link
G Fbln1 fibulin 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955413:29,837,134...29,911,313
Ensembl chrNW_004955413:29,837,134...29,912,222 		JBrowse link
G Fbln5 fibulin 5 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955438:14,073,927...14,144,644
Ensembl chrNW_004955438:14,071,410...14,145,070 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:31296900) MGI PMID:31296900 NCBI chrNW_004955574:779,672...789,621
Ensembl chrNW_004955574:786,758...788,348 		JBrowse link
G Fn1 fibronectin 1 ISO RGD PMID:12388756 RGD:1358623 NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619 		JBrowse link
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within ISO (PMID:11487638) MGI PMID:11487638 NCBI chrNW_004955451:17,695,835...17,703,894
Ensembl chrNW_004955451:17,695,835...17,703,268 		JBrowse link
G Gfod2 Gfo/Idh/MocA-like oxidoreductase domain containing 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955484:8,963,297...9,009,791
Ensembl chrNW_004955484:8,963,297...9,009,791 		JBrowse link
G Hpse2 heparanase 2 (inactive) acts_upstream_of_or_within ISO (PMID:25510506) MGI PMID:25510506 NCBI chrNW_004955507:4,442,677...5,205,976
Ensembl chrNW_004955507:4,445,772...5,205,957 		JBrowse link
G Hsd17b12 hydroxysteroid 17-beta dehydrogenase 12 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955422:3,721,452...3,864,801
Ensembl chrNW_004955422:3,717,666...3,864,801 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chrNW_004955452:2,056,428...2,141,937
Ensembl chrNW_004955452:2,057,326...2,120,280 		JBrowse link
G Ibsp integrin binding sialoprotein acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955474:2,074,659...2,086,289
Ensembl chrNW_004955474:2,074,659...2,086,289 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:25410057) MGI PMID:25410057 NCBI chrNW_004955514:474,830...488,007
Ensembl chrNW_004955514:475,731...488,007 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 acts_upstream_of_or_within ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004955502:4,359,071...4,502,623 JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004955427:2,825,940...2,919,282
Ensembl chrNW_004955427:2,826,457...2,919,282 		JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO (PMID:10742111) MGI PMID:10742111 NCBI chrNW_004955429:11,932,764...12,120,757
Ensembl chrNW_004955429:11,932,570...12,120,821 		JBrowse link
G Itih1 inter-alpha-trypsin inhibitor heavy chain 1 acts_upstream_of_or_within ISO (PMID:17675295) MGI PMID:17675295 NCBI chrNW_004955430:2,738,128...2,751,007
Ensembl chrNW_004955430:2,737,859...2,751,379 		JBrowse link
G Kazald1 Kazal type serine peptidase inhibitor domain 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955485:9,131,081...9,133,418 JBrowse link
G Lgals3 galectin 3 acts_upstream_of_or_within ISO (PMID:15800063) MGI PMID:15800063 NCBI chrNW_004955409:8,448,120...8,452,437
Ensembl chrNW_004955409:8,447,774...8,452,438 		JBrowse link
G LOC102023759 chromosome unknown open reading frame, human C6orf15 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955583:955,027...956,397
Ensembl chrNW_004955583:955,028...956,411 		JBrowse link
G Matn3 matrilin 3 involved_in ISO (MGI:1353153|PMID:10660556) ComplexPortal PMID:10660556 MGI:1353153 NCBI chrNW_004955469:2,548,443...2,568,497
Ensembl chrNW_004955469:2,548,443...2,568,497 		JBrowse link
G Mia MIA SH3 domain containing acts_upstream_of_or_within ISO (PMID:11839810) MGI PMID:11839810 NCBI chrNW_004955578:570,142...572,959
Ensembl chrNW_004955578:570,142...572,938 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within ISO (PMID:18622425) MGI PMID:18622425 NCBI chrNW_004955455:8,458,622...8,464,037
Ensembl chrNW_004955455:8,459,428...8,469,053 		JBrowse link
G Mmp9 matrix metallopeptidase 9 acts_upstream_of_or_within ISO (PMID:15800063) MGI PMID:15800063 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288 		JBrowse link
G Mpzl3 myelin protein zero like 3 acts_upstream_of_or_within ISO (PMID:15482472) MGI PMID:15482472 NCBI chrNW_004955412:19,402,064...19,420,431
Ensembl chrNW_004955412:19,402,064...19,420,431 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO (PMID:16554364) MGI PMID:16554364 NCBI chrNW_004955405:19,345,943...19,348,453
Ensembl chrNW_004955405:19,345,943...19,348,453 		JBrowse link
G Ndnf neuron derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955428:19,552,493...19,587,712
Ensembl chrNW_004955428:19,552,493...19,587,712 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:16835260) MGI PMID:16835260 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 acts_upstream_of_or_within ISO (PMID:10586052) MGI PMID:10586052 NCBI chrNW_004955485:7,994,730...8,001,776
Ensembl chrNW_004955485:7,994,874...8,000,444 		JBrowse link
G Nid1 nidogen 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955492:4,014,912...4,096,659
Ensembl chrNW_004955492:4,014,912...4,096,829 		JBrowse link
G Nox1 NADPH oxidase 1 acts_upstream_of_or_within ISO (PMID:16386251) MGI PMID:16386251 NCBI chrNW_004955503:6,973,965...7,020,182
Ensembl chrNW_004955503:6,974,239...6,997,618 		JBrowse link
G Nphp3 nephrocystin 3 acts_upstream_of_or_within ISO (PMID:7539536) MGI PMID:7539536 NCBI chrNW_004955501:5,799,879...5,837,022
Ensembl chrNW_004955501:5,799,879...5,837,022 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955496:3,321,310...3,388,625
Ensembl chrNW_004955496:3,320,946...3,388,694 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:16424942) MGI PMID:16424942 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376 		JBrowse link
G Olfml2a olfactomedin like 2A acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955419:3,397,543...3,420,118
Ensembl chrNW_004955419:3,393,024...3,414,359 		JBrowse link
G Olfml2b olfactomedin like 2B acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955462:14,299,919...14,336,576
Ensembl chrNW_004955462:14,299,596...14,337,662 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha acts_upstream_of_or_within ISO (PMID:15543606) MGI PMID:15543606 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373 		JBrowse link
G Pomt1 protein O-mannosyltransferase 1 acts_upstream_of_or_within ISO (PMID:15383666) MGI PMID:15383666 NCBI chrNW_004955513:1,189,169...1,203,933
Ensembl chrNW_004955513:1,189,169...1,203,933 		JBrowse link
G Postn periostin acts_upstream_of_or_within ISO (PMID:16314533) MGI PMID:16314533 NCBI chrNW_004955431:8,510,646...8,544,901
Ensembl chrNW_004955431:8,510,624...8,544,971 		JBrowse link
G Prdx4 peroxiredoxin 4 acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chrNW_004955509:4,111,501...4,132,529
Ensembl chrNW_004955509:4,116,379...4,132,529 		JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:14642275) MGI PMID:14642275 NCBI chrNW_004955461:14,337,914...14,622,779
Ensembl chrNW_004955461:14,337,914...14,556,931 		JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (PMID:17675295) MGI PMID:17675295 NCBI chrNW_004955448:8,366,795...8,373,010
Ensembl chrNW_004955448:8,366,925...8,372,411 		JBrowse link
G Pxdn peroxidasin involved_in ISO (PMID:19590037)
(MGI:3851833|PMID:19590037)		 UniProt PMID:19590037 MGI:3851833 NCBI chrNW_004955487:4,867,427...4,936,454
Ensembl chrNW_004955487:4,867,427...4,936,522 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs acts_upstream_of_or_within ISO (PMID:11747814) MGI PMID:11747814 NCBI chrNW_004955472:222,261...276,869
Ensembl chrNW_004955472:223,683...287,089 		JBrowse link
G Rxfp1 relaxin family peptide receptor 1 acts_upstream_of_or_within ISO (PMID:15256493) MGI PMID:15256493 NCBI chrNW_004955471:8,860,906...8,963,016
Ensembl chrNW_004955471:8,858,581...8,963,278 		JBrowse link
G Serac1 serine active site containing 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955439:4,234,440...4,291,947
Ensembl chrNW_004955439:4,234,382...4,291,941 		JBrowse link
G Serpinb5 serpin family B member 5 acts_upstream_of_or_within ISO (PMID:18593913) MGI PMID:18593913 NCBI chrNW_004955402:47,248,665...47,276,017
Ensembl chrNW_004955402:47,248,932...47,276,834 		JBrowse link
G Slc39a8 solute carrier family 39 member 8 acts_upstream_of ISO (PMID:29337306)
(MGI:6117959|PMID:29337306)		 UniProt PMID:29337306 MGI:6117959 NCBI chrNW_004955496:6,016,727...6,106,965
Ensembl chrNW_004955496:6,040,029...6,109,907 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:18267097) MGI PMID:18267097 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955466:378,277...528,260
Ensembl chrNW_004955466:378,277...528,260 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955411:4,729,753...4,822,140
Ensembl chrNW_004955411:4,729,706...4,822,140 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:17350610)
(PMID:24191021)		 MGI PMID:17350610 PMID:24191021 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO (PMID:17174946) MGI PMID:17174946 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158 		JBrowse link
G Spock2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955437:19,494,102...19,519,218
Ensembl chrNW_004955437:19,494,536...19,515,884 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:11784073), (PMID:15528466) MGI PMID:11784073 PMID:15528466 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tgfbi transforming growth factor beta induced acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955408:31,093,450...31,124,715
Ensembl chrNW_004955408:31,093,050...31,125,398 		JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO (PMID:15381731) MGI PMID:15381731 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700 		JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11b acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955417:24,804,708...24,831,338
Ensembl chrNW_004955417:24,804,664...24,831,894 		JBrowse link
G Tnr tenascin R acts_upstream_of_or_within ISO (PMID:10341229), (PMID:11077416), (PMID:16870730) MGI PMID:10341229 PMID:11077416 PMID:16870730 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within ISO (PMID:15242785) MGI PMID:15242785 NCBI chrNW_004955437:516,713...561,188
Ensembl chrNW_004955437:511,963...553,856 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:16537898) MGI PMID:16537898 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
G Vit vitrin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955441:4,527,281...4,650,384
Ensembl chrNW_004955441:4,546,984...4,649,962 		JBrowse link
G Vtn vitronectin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955481:4,765,078...4,768,027
Ensembl chrNW_004955481:4,765,193...4,771,019 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 acts_upstream_of_or_within ISO (PMID:19279005)
(PMID:18757743)		 MGI PMID:18757743 PMID:19279005 NCBI chrNW_004955486:9,365,920...9,369,117
Ensembl chrNW_004955486:9,366,796...9,369,115 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within ISO (PMID:35181734) MGI PMID:35181734 NCBI chrNW_004955409:1,451,506...1,631,976
Ensembl chrNW_004955409:1,467,732...1,674,042 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:17943183) MGI PMID:17943183 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541 		JBrowse link
gene expression involved in extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:23900597) MGI PMID:23900597 NCBI chrNW_004955474:2,254,842...2,259,303 JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO (PMID:30659184) MGI PMID:30659184 NCBI chrNW_004955545:1,451,541...1,467,856
Ensembl chrNW_004955545:1,452,395...1,462,639 		JBrowse link
G Znf469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004955541:2,404,549...2,438,183 JBrowse link
glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a3 collagen type IV alpha 3 chain involved_in ISO (MGI:3610934|PMID:12631063) UniProt PMID:12631063 MGI:3610934 NCBI chrNW_004955453:7,261,278...7,351,414 JBrowse link
G Col4a4 collagen type IV alpha 4 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:17942953), (PMID:19675380)
(PMID:10534397)		 UniProt
MGI		 PMID:10534397 PMID:17942953 PMID:19675380 NCBI chrNW_004955453:7,405,167...7,524,038
Ensembl chrNW_004955453:7,420,203...7,520,200 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:18480751) MGI PMID:18480751 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 involved_in ISO (MGI:3776221|PMID:16041630) UniProt PMID:16041630 MGI:3776221 NCBI chrNW_004955469:9,279,540...9,292,012
Ensembl chrNW_004955469:9,279,540...9,291,954 		JBrowse link
G Myo1e myosin IE involved_in ISO (MGI:4441423|PMID:19005011) UniProt PMID:19005011 MGI:4441423 NCBI chrNW_004955450:15,421,843...15,551,680
Ensembl chrNW_004955450:15,456,580...15,551,584 		JBrowse link
G Nid1 nidogen 1 acts_upstream_of_or_within ISO (PMID:14566019) MGI PMID:14566019 NCBI chrNW_004955492:4,014,912...4,096,659
Ensembl chrNW_004955492:4,014,912...4,096,829 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISO (MGI:5306737|PMID:21719793)
(PMID:21719793)		 UniProt PMID:21719793 MGI:5306737 NCBI chrNW_004955444:9,902,334...10,066,929
Ensembl chrNW_004955444:9,899,941...9,974,666 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306737|PMID:21719793) UniProt PMID:21719793 MGI:5306737 NCBI chrNW_004955445:9,919,472...10,020,491
Ensembl chrNW_004955445:9,920,789...10,020,491 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:19205749) UniProt PMID:19205749 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473 		JBrowse link
intercellular bridge organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tex14 testis expressed 14, intercellular bridge forming factor involved_in ISO (MGI:3621609|PMID:16549803)
(PMID:16549803)		 UniProt PMID:16549803 MGI:3621609 NCBI chrNW_004955451:4,206,114...4,296,969
Ensembl chrNW_004955451:4,179,591...4,297,024 		JBrowse link
metanephric glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO (PMID:16886065), (PMID:7670489) MGI PMID:7670489 PMID:16886065 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455 		JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin like involved_in ISO (PMID:25451920) UniProt PMID:25451920 NCBI chrNW_004955413:26,846,714...26,862,082
Ensembl chrNW_004955413:26,851,420...26,862,081 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684 		JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:25572963) MGI PMID:25572963 NCBI chrNW_004955424:15,820,734...16,034,278
Ensembl chrNW_004955424:15,824,435...16,033,946 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:25704091) BHF-UCL PMID:25704091 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (PMID:30729664) BHF-UCL PMID:30729664 NCBI chrNW_004955423:2,573,851...2,765,353
Ensembl chrNW_004955423:2,573,795...2,765,772 		JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen dependent TFPI regulating protein involved_in ISO (PMID:28341552) BHF-UCL PMID:28341552 NCBI chrNW_004955465:2,721,171...2,823,368
Ensembl chrNW_004955465:2,742,169...2,809,790 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:6158728|PMID:26491108)
(PMID:26491108)		 BHF-UCL PMID:26491108 MGI:6158728 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in ISO (MGI:6158728|PMID:26491108) BHF-UCL PMID:26491108 MGI:6158728 NCBI chrNW_004955413:3,982,670...3,996,320
Ensembl chrNW_004955413:3,981,400...3,996,021 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in ISO (MGI:6158728|PMID:26491108)
(PMID:26491108)		 BHF-UCL PMID:26491108 MGI:6158728 NCBI chrNW_004955486:1,790,531...1,817,986
Ensembl chrNW_004955486:1,792,115...1,818,362 		JBrowse link
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) BHF-UCL PMID:10545518 NCBI chrNW_004955415:30,507,972...30,512,109 JBrowse link
G Dpp4 dipeptidyl peptidase 4 involved_in ISO (PMID:16651416) UniProt PMID:16651416 NCBI chrNW_004955449:11,795,994...11,873,408
Ensembl chrNW_004955449:11,795,536...11,875,412 		JBrowse link
G Fap fibroblast activation protein alpha involved_in ISO (PMID:16651416) UniProt PMID:16651416 NCBI chrNW_004955449:11,623,838...11,694,256
Ensembl chrNW_004955449:11,623,741...11,694,335 		JBrowse link
negative regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein alpha involved_in ISO (PMID:10455171) UniProt PMID:10455171 NCBI chrNW_004955449:11,623,838...11,694,256
Ensembl chrNW_004955449:11,623,741...11,694,335 		JBrowse link
polarized secretion of basement membrane proteins in epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:33144400) MGI PMID:33144400 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955459:8,382,671...8,628,048
Ensembl chrNW_004955459:8,408,160...8,629,344 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955421:767,648...957,160
Ensembl chrNW_004955421:767,210...897,457 		JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955532:1,446,553...1,465,310
Ensembl chrNW_004955532:1,397,900...1,466,312 		JBrowse link
G Phldb1 pleckstrin homology like domain family B member 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955412:19,754,997...19,800,984
Ensembl chrNW_004955412:19,756,379...19,800,984 		JBrowse link
G Phldb2 pleckstrin homology like domain family B member 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chrNW_004955427:12,284,100...12,385,755
Ensembl chrNW_004955427:12,273,062...12,388,217 		JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 involved_in ISO (PMID:27402836) UniProt PMID:27402836 NCBI chrNW_004955524:773,997...782,911
Ensembl chrNW_004955524:774,737...783,310 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913)
(PMID:26178373), (PMID:26220971), (PMID:26711913)		 UniProt PMID:26178373 PMID:26220971 PMID:26711913 MGI:5660411 MGI:5695689 MGI:6158865 NCBI chrNW_004955422:19,463,090...19,470,605
Ensembl chrNW_004955422:19,463,987...19,470,605 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO (MGI:6112863|PMID:29304157)
(PMID:29304157)		 BHF-UCL PMID:29304157 MGI:6112863 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576 		JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:17033827) ComplexPortal PMID:17033827 NCBI chrNW_004955437:516,713...561,188
Ensembl chrNW_004955437:511,963...553,856 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen acts_upstream_of ISO (PMID:30729664) BHF-UCL PMID:30729664 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700)
(PMID:25056700)		 BHF-UCL PMID:25056700 MGI:5605894 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO RGD PMID:27488450 RGD:152995505 NCBI chrNW_004955486:2,191,903...2,197,193
Ensembl chrNW_004955486:2,191,903...2,198,538 		JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:21307346) BHF-UCL PMID:21307346 NCBI chrNW_004955518:4,788,857...4,800,273
Ensembl chrNW_004955518:4,788,656...4,801,204 		JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of		 ISO (PMID:21307346)
(PMID:30729664)		 BHF-UCL PMID:21307346 PMID:30729664 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Smad4 SMAD family member 4 involved_in ISO (PMID:26747772) BHF-UCL PMID:26747772 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20881014) MGI PMID:20881014 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of ISO (MGI:5775885|PMID:24279830) BHF-UCL PMID:24279830 MGI:5775885 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of ISO (PMID:28251559) BHF-UCL PMID:28251559 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017 		JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:21419085 RGD:5129171 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO (MGI:3640731|PMID:16730346)
(PMID:16730346)		 BHF-UCL PMID:16730346 MGI:3640731 NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181 		JBrowse link
G Cpb2 carboxypeptidase B2 ISO RGD PMID:23369837 RGD:7243115 NCBI chrNW_004955518:3,740,348...3,803,540
Ensembl chrNW_004955518:3,740,348...3,803,539 		JBrowse link
G Ier3ip1 immediate early response 3 interacting protein 1 involved_in ISO (PMID:33122427) UniProt PMID:33122427 NCBI chrNW_004955402:32,532,692...32,550,638
Ensembl chrNW_004955402:32,532,629...32,550,710 		JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:19158077) BHF-UCL PMID:19158077 NCBI chrNW_004955518:4,788,857...4,800,273
Ensembl chrNW_004955518:4,788,656...4,801,204 		JBrowse link
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carmil2 capping protein regulator and myosin 1 linker 2 involved_in ISO (PMID:26466680), (PMID:26578515) UniProt PMID:26466680 PMID:26578515 NCBI chrNW_004955484:9,025,409...9,037,942
Ensembl chrNW_004955484:9,025,460...9,037,580 		JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chrNW_004955459:8,382,671...8,628,048
Ensembl chrNW_004955459:8,408,160...8,629,344 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chrNW_004955421:767,648...957,160
Ensembl chrNW_004955421:767,210...897,457 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:2158097|PMID:11723120) UniProt PMID:11723120 MGI:2158097 NCBI chrNW_004955462:13,578,638...13,644,834
Ensembl chrNW_004955462:13,584,724...13,642,968 		JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in ISO (PMID:20137952) UniProt PMID:20137952 NCBI chrNW_004955460:10,402,855...10,412,459
Ensembl chrNW_004955460:10,402,855...10,412,710 		JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:26587789) ARUK-UCL PMID:26587789 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Meltf melanotransferrin involved_in ISO (PMID:16713448) UniProt PMID:16713448 NCBI chrNW_004955420:13,036,767...13,055,477
Ensembl chrNW_004955420:13,035,309...13,055,548 		JBrowse link
G Pdpn podoplanin involved_in ISO (PMID:25486435) UniProt PMID:25486435 NCBI chrNW_004955527:4,183,639...4,215,200 JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:5688835|PMID:21984612)
(PMID:21984612)		 UniProt PMID:21984612 MGI:5688835 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
positive regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO RGD PMID:19846571 RGD:8693597 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239 		JBrowse link
G Cflar CASP8 and FADD like apoptosis regulator ISO RGD PMID:24691542 RGD:11341715 NCBI chrNW_004955403:415,092...442,214
Ensembl chrNW_004955403:412,632...434,741 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO (MGI:6112863|PMID:29304157) BHF-UCL PMID:29304157 MGI:6112863 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576 		JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 involved_in ISO (PMID:29606302) UniProt PMID:29606302 NCBI chrNW_004955456:7,860,191...7,868,526
Ensembl chrNW_004955456:7,860,414...7,868,337 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:20951202) MGI PMID:20951202 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5776647|PMID:26690653) UniProt PMID:26690653 MGI:5776647 NCBI chrNW_004955422:19,463,090...19,470,605
Ensembl chrNW_004955422:19,463,987...19,470,605 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO (PMID:17416596) BHF-UCL PMID:17416596 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G Has2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chrNW_004955540:593,316...609,760
Ensembl chrNW_004955540:593,316...609,865 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of ISO (MGI:6370101|PMID:31319059)
(PMID:31319059)		 BHF-UCL PMID:31319059 MGI:6370101 NCBI chrNW_004955537:2,894,913...2,914,284
Ensembl chrNW_004955537:2,894,914...2,914,284 		JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:31932796) UniProt PMID:31932796 NCBI chrNW_004955434:9,675,654...9,770,174
Ensembl chrNW_004955434:9,675,654...9,770,174 		JBrowse link
regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddr1 discoidin domain receptor tyrosine kinase 1 involved_in ISO (PMID:12065315)
(MGI:3629583|PMID:12065315)		 UniProt PMID:12065315 MGI:3629583 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:16738537 RGD:2313717 NCBI chrNW_004955412:29,433,730...29,602,389
Ensembl chrNW_004955412:29,432,482...29,545,580 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 involved_in ISO (PMID:20876804) UniProt PMID:20876804 NCBI chrNW_004955408:29,370,480...29,383,531
Ensembl chrNW_004955408:29,370,468...29,383,971 		JBrowse link
regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004955406:18,435,984...18,527,967
Ensembl chrNW_004955406:18,437,672...18,527,698 		JBrowse link
G Angptl7 angiopoietin like 7 involved_in ISO (PMID:21199193) UniProt PMID:21199193 NCBI chrNW_004955486:2,539,781...2,545,630
Ensembl chrNW_004955486:2,539,781...2,545,630 		JBrowse link
G Axin2 axin 2 involved_in ISO (MGI:6108194|PMID:28069701)
(PMID:28069701)		 BHF-UCL PMID:28069701 MGI:6108194 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225 		JBrowse link
G Itgb3 integrin subunit beta 3 acts_upstream_of_or_within ISO (PMID:22984613) MGI PMID:22984613 NCBI chrNW_004955478:9,788,192...9,830,254
Ensembl chrNW_004955478:9,788,149...9,823,746 		JBrowse link
G Prdm5 PR/SET domain 5 involved_in ISO (PMID:21664999) ARUK-UCL PMID:21664999 NCBI chrNW_004955428:19,684,721...19,881,716
Ensembl chrNW_004955428:19,714,730...19,881,917 		JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs involved_in ISO (PMID:18591254) BHF-UCL PMID:18591254 NCBI chrNW_004955472:222,261...276,869
Ensembl chrNW_004955472:223,683...287,089 		JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:26376865) ARUK-UCL PMID:26376865 NCBI chrNW_004955445:10,708,147...10,722,109
Ensembl chrNW_004955445:10,709,681...10,722,264 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:24038871) MGI PMID:24038871 NCBI chrNW_004955597:446,489...452,003
Ensembl chrNW_004955597:446,855...451,949 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:21780244) MGI PMID:21780244 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Znf469 zinc finger protein 469 involved_in ISO (PMID:21664999) ARUK-UCL PMID:21664999 NCBI chrNW_004955541:2,404,549...2,438,183 JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:17881493) MGI PMID:17881493 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12533
    cellular process 11968
      cellular component organization or biogenesis 5405
        cellular component organization 5281
          extracellular structure organization 253
            extracellular matrix organization + 252
            intercellular bridge organization + 1
paths to the root