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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular structure organization
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Accession:GO:0043062 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite.
Synonyms:exact_synonym: extracellular structure organisation;   extracellular structure organization and biogenesis


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basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB2 laminin subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:49,045,419...49,057,340
Ensembl chr 3:50,125,460...50,137,074 		JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:185,191,401...185,245,154
Ensembl chr 1:189,996,639...190,034,206 		JBrowse link
G LAMB4 laminin subunit beta 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:100,005,662...100,112,128
Ensembl chr 7:112,727,343...112,825,707 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467571) Ensembl
MGI		 PMID:16467571 GO_REF:0000107 NCBI chr 7:93,347,335...93,358,921
Ensembl chr 7:106,587,858...106,599,605 		JBrowse link
G PXDN peroxidasin acts_upstream_of
involved_in		 ISO
IEA		 (PMID:32543734) UniProt
Ensembl		 PMID:32543734 GO_REF:0000107 NCBI chr2A:1,584,901...1,699,675
Ensembl chr2A:1,582,193...1,692,033 		JBrowse link
G RAMP2 receptor activity modifying protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,554,888...14,557,175
Ensembl chr17:14,779,666...14,781,481 		JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMA1 chymase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:5,277,269...5,280,335
Ensembl chr14:23,400,345...23,403,548 		JBrowse link
G CTSS cathepsin S involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:126,084,249...126,118,221
Ensembl chr 1:129,733,996...129,768,318 		JBrowse link
G HPN hepsin involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:31,985,761...32,012,841
Ensembl chr19:40,725,319...40,750,628 		JBrowse link
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAV1 caveolin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884617) Ensembl
MGI		 PMID:11884617 GO_REF:0000107 NCBI chr 7:108,497,125...108,533,090
Ensembl chr 7:121,193,424...121,229,655 		JBrowse link
G CAV2 caveolin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884617) Ensembl
MGI		 PMID:11884617 GO_REF:0000107 NCBI chr 7:108,254,074...108,480,716
Ensembl chr 7:121,168,579...121,177,415 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:22235340) MGI PMID:22235340 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:91,282,617...91,440,187
Ensembl chr13:110,407,009...110,562,529 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25158062) Ensembl
MGI		 PMID:25158062 GO_REF:0000107 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240 		JBrowse link
G DAG1 dystroglycan 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23217742) Ensembl
MGI		 PMID:23217742 GO_REF:0000107 NCBI chr 3:49,396,180...49,464,689
Ensembl chr 3:50,640,615...50,703,852 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26024086) Ensembl
MGI		 PMID:26024086 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G FERMT1 FERM domain containing kindlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,063,480...6,120,206
Ensembl chr20:5,856,287...5,902,251 		JBrowse link
G FKRP fukutin related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28039900) Ensembl
MGI		 PMID:28039900 GO_REF:0000107 NCBI chr19:43,738,339...43,748,250
Ensembl chr19:52,273,546...52,276,341 		JBrowse link
G FKTN fukutin acts_upstream_of_or_within ISO (PMID:29360985) MGI PMID:29360985 NCBI chr 9:76,723,071...76,821,611
Ensembl chr 9:104,849,496...104,925,422 		JBrowse link
G FLRT2 fibronectin leucine rich transmembrane protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:66,114,208...66,738,948
Ensembl chr14:85,572,250...85,574,232 		JBrowse link
G FSHR follicle stimulating hormone receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9811848) Ensembl
MGI		 PMID:9811848 GO_REF:0000107 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258 		JBrowse link
G GAS2 growth arrest specific 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27734842) Ensembl
MGI		 PMID:27734842 GO_REF:0000107 NCBI chr11:22,639,677...22,822,208
Ensembl chr11:22,583,367...22,729,243 		JBrowse link
G HMCN1 hemicentin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:161,254,948...161,717,526
Ensembl chr 1:165,522,384...165,869,148 		JBrowse link
G ITGB1 integrin subunit beta 1 involved_in ISO (MGI:5571208|PMID:24681597)
(PMID:24681597)		 CAFA PMID:24681597 MGI:5571208 NCBI chr10:33,023,573...33,081,384
Ensembl chr10:33,608,978...33,644,031 		JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:12140558), (PMID:21970971) MGI PMID:12140558 PMID:21970971 NCBI chr22:14,077,463...14,929,250 JBrowse link
G MMP11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
MGI		 PMID:18622425 GO_REF:0000107 NCBI chr22:4,528,639...4,540,118
Ensembl chr22:22,615,969...22,624,567 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:16436605) MGI PMID:16436605 NCBI chr17:36,389,549...36,425,161
Ensembl chr17:41,038,302...41,073,872 		JBrowse link
G POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chr 1:45,494,834...45,525,804
Ensembl chr 1:46,849,528...46,859,137 		JBrowse link
G POMT2 protein O-mannosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chr14:57,827,841...57,874,100
Ensembl chr14:77,029,625...77,075,806 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PXDN peroxidasin involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:1,584,901...1,699,675
Ensembl chr2A:1,582,193...1,692,033 		JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21069829) Ensembl
MGI		 PMID:21069829 GO_REF:0000107 NCBI chr11:203,317...210,135
Ensembl chr11:248,880...255,269 		JBrowse link
G SPINT2 serine peptidase inhibitor, Kunitz type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19592578) Ensembl
MGI		 PMID:19592578 GO_REF:0000107 NCBI chr19:35,354,043...35,384,063
Ensembl chr19:43,928,847...43,958,886 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:16186342) MGI PMID:16186342 NCBI chr 6:10,237,834...10,260,843 JBrowse link
biofilm matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSG cathepsin G involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:5,342,517...5,345,218
Ensembl chr14:23,466,265...23,468,960 		JBrowse link
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr15:67,492,494...67,563,265
Ensembl chr15:86,733,853...86,771,420 		JBrowse link
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,442,053...76,818,726
Ensembl chr 5:81,827,560...82,199,840 		JBrowse link
G ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11741898) Ensembl
MGI		 PMID:11741898 GO_REF:0000107 NCBI chr10:67,145,400...67,232,934
Ensembl chr10:69,671,222...69,758,229 		JBrowse link
G ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:124,873,078...125,153,730
Ensembl chr 5:130,635,937...130,893,174 		JBrowse link
G ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16556917) Ensembl
MGI		 PMID:16556917 GO_REF:0000107 NCBI chr 5:174,264,811...174,502,817
Ensembl chr 5:181,557,928...181,786,175 		JBrowse link
G ANTXR2 ANTXR cell adhesion molecule 2 acts_upstream_of_or_within ISO (PMID:28604699) MGI PMID:28604699 NCBI chr 4:44,124,282...44,284,949
Ensembl chr 4:49,972,472...50,132,738 		JBrowse link
G ANXA2 annexin A2 acts_upstream_of_or_within ISO (PMID:14702107) MGI PMID:14702107 NCBI chr15:39,322,303...39,371,565
Ensembl chr15:57,625,425...57,674,250 		JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:20889), (PMID:8895222)
(PMID:16338116)
(PMID:8096378)
(PMID:4808708)		 MGI PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17029294), (PMID:17683922), (PMID:21467034), (PMID:3070812), (PMID:4100752), (PMID:4110409), (PMID:7859283)
(PMID:17029294), (PMID:21467034)		 Ensembl
MGI		 PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... GO_REF:0000107 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10581026), (PMID:11668593) Ensembl
TreeGrafter
MGI		 PMID:10581026 PMID:11668593 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:32,734,950...32,765,837
Ensembl chr 6:33,849,885...33,879,635 		JBrowse link
G COL14A1 collagen type XIV alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22906538) Ensembl
MGI		 PMID:22906538 GO_REF:0000107 NCBI chr 8:116,818,467...117,065,385
Ensembl chr 8:119,610,929...119,831,880 		JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,274,349...44,291,764
Ensembl chr17:49,150,677...49,166,677 		JBrowse link
G COL1A2 collagen type I alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:86,344,657...86,381,282
Ensembl chr 7:99,935,185...99,971,803 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 ISO (PMID:1429602)
(PMID:11171689), (PMID:7590256), (PMID:9832566), (PMID:9915573)
(PMID:3070812), (PMID:7276808), (PMID:8989518)
(PMID:9022054)		 BHF-UCL
MGI		 PMID:1429602 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 More... NCBI chr12:40,726,137...40,757,690 JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9050868) Ensembl
MGI		 PMID:9050868 GO_REF:0000107 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G COL5A1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383546), (PMID:16492673), (PMID:17029294)
(PMID:17029294), (PMID:21467034)		 Ensembl
MGI		 PMID:15383546 PMID:16492673 PMID:17029294 PMID:21467034 GO_REF:0000107 NCBI chr 9:105,746,388...105,956,280
Ensembl chr 9:134,342,955...134,544,651 		JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:76,339,756...76,487,133
Ensembl chr2B:194,259,316...194,407,237 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28604699)
(PMID:25158062)		 Ensembl
MGI		 PMID:25158062 PMID:28604699 GO_REF:0000107 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19808781)
(PMID:24312420)
(PMID:26746240)		 Ensembl
MGI		 PMID:19808781 PMID:24312420 PMID:26746240 GO_REF:0000107 NCBI chr19:18,222,270...18,230,936
Ensembl chr19:19,229,562...19,238,008 		JBrowse link
G CRTAP cartilage associated protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:33,040,030...33,071,095
Ensembl chr 3:33,342,694...33,370,863 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824 		JBrowse link
G DDR2 discoidin domain receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:138,048,730...138,200,426
Ensembl chr 1:141,932,158...141,990,766 		JBrowse link
G DPT dermatopontin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12230512), (PMID:16877395) Ensembl
TreeGrafter
MGI		 PMID:12230512 PMID:16877395 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:144,182,053...144,218,632
Ensembl chr 1:147,904,337...147,938,208 		JBrowse link
G ERO1A endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:28106121) MGI
Ensembl		 PMID:28106121 GO_REF:0000107 NCBI chr14:33,236,087...33,292,127
Ensembl chr14:51,520,048...51,575,798 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19850926) Ensembl
MGI		 PMID:19850926 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G FKBP10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24777781)
(PMID:28206698)		 Ensembl
MGI		 PMID:24777781 PMID:28206698 GO_REF:0000107 NCBI chr17:15,490,667...15,500,894
Ensembl chr17:15,709,629...15,718,953 		JBrowse link
G FMOD fibromodulin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:178,942,472...178,953,158
Ensembl chr 1:183,238,130...183,244,074 		JBrowse link
G FOXC1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:10767326) MGI PMID:10767326 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:10767326) MGI PMID:10767326 NCBI chr16:67,237,476...67,239,545 JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) BHF-UCL PMID:15539560 NCBI chr15:11,213,870...11,230,619 JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:10660670) MGI PMID:10660670 NCBI chr 9:97,730,850...97,820,554
Ensembl chr 9:126,240,722...126,322,420 		JBrowse link
G LOC100976854 A disintegrin and metalloproteinase with thrombospondin motifs 7 involved_in ISO (PMID:29618652) MGI PMID:29618652 NCBI chr15:63,951,548...63,979,068
Ensembl chr15:76,692,416...76,735,344 		JBrowse link
G LOC100992963 tenascin-X acts_upstream_of_or_within ISO (PMID:15194424)
(PMID:11925569)		 MGI PMID:11925569 PMID:15194424 NCBI chr 6:31,687,994...31,756,279
Ensembl chr 6:32,571,199...32,626,155 		JBrowse link
G LOX lysyl oxidase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:26700732) RGD
TreeGrafter
MGI
Ensembl		 PMID:16432278 PMID:16804742 PMID:26700732 GO_REF:0000107 GO_REF:0000118 RGD:1600668 RGD:1600669 NCBI chr 5:117,450,833...117,464,957
Ensembl chr 5:123,234,662...123,248,717 		JBrowse link
G LOXL1 lysyl oxidase like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:52,835,675...52,861,324 JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:22,547,303...22,653,676
Ensembl chr 8:19,483,335...19,589,522 		JBrowse link
G LOXL3 lysyl oxidase like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:74,598,870...74,622,502
Ensembl chr2A:76,105,957...76,128,495 		JBrowse link
G LOXL4 lysyl oxidase like 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:94,861,187...94,881,784
Ensembl chr10:98,357,322...98,372,691 		JBrowse link
G MIA3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO (PMID:21606205) MGI PMID:21606205 NCBI chr 1:198,291,200...198,339,502
Ensembl chr 1:203,304,237...203,354,919 		JBrowse link
G MKX mohawk homeobox acts_upstream_of_or_within ISO (PMID:20696843) MGI PMID:20696843 NCBI chr10:27,820,454...27,893,373
Ensembl chr10:28,181,483...28,254,311 		JBrowse link
G MMP11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
MGI		 PMID:18622425 GO_REF:0000107 NCBI chr22:4,528,639...4,540,118
Ensembl chr22:22,615,969...22,624,567 		JBrowse link
G NF1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10383727) Ensembl
MGI		 PMID:10383727 GO_REF:0000107 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295 		JBrowse link
G OPTC opticin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:179,097,003...179,113,903
Ensembl chr 1:183,391,155...183,407,509 		JBrowse link
G P3H1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within ISO (PMID:20363744) MGI PMID:20363744 NCBI chr 1:42,046,128...42,065,718
Ensembl chr 1:43,423,900...43,443,336 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) involved_in ISO (MGI:5779580|PMID:27119146)
(PMID:27119146)		 UniProt PMID:27119146 MGI:5779580 NCBI chr17:15,500,999...15,511,926 JBrowse link
G P4HA1 prolyl 4-hydroxylase subunit alpha 1 acts_upstream_of_or_within ISO (PMID:17135260) MGI PMID:17135260 NCBI chr10:69,554,722...69,643,765
Ensembl chr10:72,017,500...72,106,083 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467571) Ensembl
MGI		 PMID:16467571 GO_REF:0000107 NCBI chr 7:93,347,335...93,358,921
Ensembl chr 7:106,587,858...106,599,605 		JBrowse link
G PXDN peroxidasin involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:1,584,901...1,699,675
Ensembl chr2A:1,582,193...1,692,033 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027)
(PMID:18802027)		 UniProt PMID:18802027 MGI:4413438 NCBI chr 8:141,027,765...141,031,194 JBrowse link
G SELENON selenoprotein N acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:28106121) MGI
Ensembl		 PMID:28106121 GO_REF:0000107 NCBI chr 1:25,058,907...25,076,817
Ensembl chr 1:26,127,125...26,141,745 		JBrowse link
G SERPINF2 serpin family F member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,725,469...1,738,887
Ensembl chr17:1,618,549...1,631,570 		JBrowse link
G SERPINH1 serpin family H member 1 acts_upstream_of_or_within ISO (PMID:10995453)
(PMID:22492985)		 MGI PMID:10995453 PMID:22492985 NCBI chr11:70,621,893...70,632,570 JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19079247) Ensembl
MGI		 PMID:19079247 GO_REF:0000107 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15993878) Ensembl
MGI		 PMID:15993878 GO_REF:0000107 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27435297) Ensembl
MGI		 PMID:27435297 GO_REF:0000107 NCBI chr14:57,982,041...58,013,037
Ensembl chr14:77,183,185...77,213,382 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated acts_upstream_of_or_within ISO (PMID:27435297) MGI PMID:27435297 NCBI chr15:69,691,717...69,715,617
Ensembl chr15:88,888,093...88,912,327 		JBrowse link
G ZNF469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chr16:68,777,496...69,151,995
Ensembl chr16:88,803,202...88,815,390 		JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:16338116)
(PMID:20889), (PMID:3385878), (PMID:937819)		 MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:24820199) MGI PMID:24820199 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19855011) Ensembl
MGI		 PMID:19855011 GO_REF:0000107 NCBI chr11:61,226,755...61,233,181
Ensembl chr11:64,555,877...64,561,950 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525 		JBrowse link
G FBLN5 fibulin 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:72,504,240...72,583,160
Ensembl chr14:91,848,430...91,927,304 		JBrowse link
G LOC100992963 tenascin-X involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,687,994...31,756,279
Ensembl chr 6:32,571,199...32,626,155 		JBrowse link
G LOX lysyl oxidase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23413430)
(PMID:12417550), (PMID:16192629)		 RGD
MGI
Ensembl		 PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000107 RGD:1600669 NCBI chr 5:117,450,833...117,464,957
Ensembl chr 5:123,234,662...123,248,717 		JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chr19:37,637,509...37,674,791
Ensembl chr19:46,144,485...46,181,636 		JBrowse link
G MFAP4 microfibril associated protein 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:31,725,732...31,729,528
Ensembl chr17:36,890,778...36,893,230 		JBrowse link
G MYH11 myosin heavy chain 11 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:16,007,168...16,091,058 JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19940141) Ensembl
MGI		 PMID:19940141 GO_REF:0000107 NCBI chr15:50,067,560...50,732,761
Ensembl chr15:68,859,819...69,491,696 		JBrowse link
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chr 7:86,344,657...86,381,282
Ensembl chr 7:99,935,185...99,971,803 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19114551) Ensembl
MGI		 PMID:19114551 GO_REF:0000107 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240 		JBrowse link
G ELN elastin involved_in ISO (MGI:5142190|PMID:20576933) BHF-UCL PMID:20576933 MGI:5142190
G FKBP10 FKBP prolyl isomerase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28774593) Ensembl
MGI		 PMID:28774593 GO_REF:0000107 NCBI chr17:15,490,667...15,500,894
Ensembl chr17:15,709,629...15,718,953 		JBrowse link
G GAS6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 Ensembl chr13:113,968,843...114,009,562 JBrowse link
G GPM6B glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:6,377,913...6,544,826
Ensembl chr  X:13,666,192...13,711,964 		JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20181608) Ensembl
MGI		 PMID:20181608 GO_REF:0000107 NCBI chr 1:131,962,801...131,969,331
Ensembl chr 1:135,785,754...135,792,652 		JBrowse link
G HAS1 hyaluronan synthase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:48,657,165...48,668,130
Ensembl chr19:57,537,049...57,547,804 		JBrowse link
G HAS2 hyaluronan synthase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:118,313,186...118,342,160
Ensembl chr 8:121,072,154...121,089,365 		JBrowse link
G HAS3 hyaluronan synthase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:49,476,561...49,488,820
Ensembl chr16:68,868,416...68,877,476 		JBrowse link
G LOC103785234 hyaluronan synthase 2-like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:121,341,839...121,344,439 JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G QSOX1 quiescin sulfhydryl oxidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:155,641,793...155,687,231
Ensembl chr 1:159,313,245...159,358,672 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chr16:48,734,664...48,825,241
Ensembl chr16:68,131,905...68,142,871 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of ISO (PMID:20881014) MGI PMID:20881014 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCN2 cellular communication network factor 2 ISO positive regulation RGD PMID:18613219 RGD:2314619 NCBI chr 6:129,729,572...129,733,113
Ensembl chr 6:133,836,319...133,842,077 		JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 involved_in ISO (MGI:4438316|PMID:19767743)
(PMID:19767743)		 UniProt PMID:19767743 MGI:4438316 NCBI chr11:46,236,384...46,280,145
Ensembl chr11:46,788,561...46,830,246 		JBrowse link
G ENG endoglin ISO RGD PMID:15539634 RGD:1601032 NCBI chr 9:98,934,080...98,973,862
Ensembl chr 9:127,605,608...127,644,641 		JBrowse link
G TMEM38B transmembrane protein 38B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27188440) Ensembl
MGI		 PMID:27188440 GO_REF:0000107 NCBI chr 9:76,854,177...76,938,334
Ensembl chr 9:104,980,935...105,128,988 		JBrowse link
G ZNF469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chr16:68,777,496...69,151,995
Ensembl chr16:88,803,202...88,815,390 		JBrowse link
extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:125,264,129...125,291,655
Ensembl chr11:129,154,895...129,182,326 		JBrowse link
G ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in ISO (MGI:6508502|PMID:23233679)
(PMID:23233679)		 UniProt PMID:23233679 MGI:6508502 NCBI chr21:13,352,222...13,402,165
Ensembl chr21:26,744,807...26,788,736 		JBrowse link
G CAPG capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chr2A:85,447,296...85,466,677
Ensembl chr2A:86,997,891...87,016,263 		JBrowse link
G CMA1 chymase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:5,277,269...5,280,335
Ensembl chr14:23,400,345...23,403,548 		JBrowse link
G ENG endoglin involved_in ISO (PMID:18223685) BHF-UCL PMID:18223685 NCBI chr 9:98,934,080...98,973,862
Ensembl chr 9:127,605,608...127,644,641 		JBrowse link
G EXOC8 exocyst complex component 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:206,884,334...206,889,753
Ensembl chr 1:211,911,802...211,913,979 		JBrowse link
G FLOT1 flotillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,472,839...30,487,809
Ensembl chr 6:31,342,033...31,357,559 		JBrowse link
G GSN gelsolin NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chr 9:92,413,819...92,460,483
Ensembl chr 9:120,741,148...120,805,831 		JBrowse link
G KIF9 kinesin family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:47,130,047...47,183,636
Ensembl chr 3:48,229,703...48,283,002 		JBrowse link
G KLK4 kallikrein related peptidase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chr19:47,849,158...47,876,522
Ensembl chr19:56,764,073...56,768,169 		JBrowse link
G LAMC1 laminin subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:158,541,635...158,663,836
Ensembl chr 1:162,700,704...162,822,534 		JBrowse link
G LCP1 lymphocyte cytosolic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:26,820,846...26,906,916 JBrowse link
G LOC100982214 plasminogen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:158,662,192...158,713,413
Ensembl chr 6:163,673,464...163,736,777 		JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,890,811...97,902,778
Ensembl chr11:101,377,001...101,387,679 		JBrowse link
G MMP20 matrix metallopeptidase 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22243248) Ensembl
MGI		 PMID:22243248 GO_REF:0000107 NCBI chr11:97,518,573...97,566,881
Ensembl chr11:101,011,084...101,059,322 		JBrowse link
G NOXO1 NADPH oxidase organizer 1 involved_in ISO (PMID:19755710) UniProt PMID:19755710 NCBI chr16:720,087...725,567 JBrowse link
G PBXIP1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO (PMID:30659184) MGI PMID:30659184 NCBI chr 1:130,292,611...130,304,667 JBrowse link
G SH3PXD2B SH3 and PX domains 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:167,678,633...167,807,960
Ensembl chr 5:174,591,759...174,719,957 		JBrowse link
G WDR72 WD repeat domain 72 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26247047) Ensembl
MGI		 PMID:26247047 GO_REF:0000107 NCBI chr15:32,449,840...32,695,815
Ensembl chr15:50,775,112...51,023,853 		JBrowse link
extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI3BP ABI family member 3 binding protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:97,842,070...98,086,311
Ensembl chr 3:104,523,470...104,765,688 		JBrowse link
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr21:13,270,668...13,279,217
Ensembl chr21:26,656,370...26,665,485 		JBrowse link
G ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif 10 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr19:7,861,870...7,892,442
Ensembl chr19:8,708,164...8,737,556 		JBrowse link
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:76,442,053...76,818,726
Ensembl chr 5:81,827,560...82,199,840 		JBrowse link
G ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif 13 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 9:104,541,051...104,582,574
Ensembl chr 9:133,156,761...133,193,707 		JBrowse link
G ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr10:67,145,400...67,232,934
Ensembl chr10:69,671,222...69,758,229 		JBrowse link
G ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:125,264,129...125,291,655
Ensembl chr11:129,154,895...129,182,326 		JBrowse link
G ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:5,470,841...5,651,360
Ensembl chr 5:5,150,365...5,329,556 		JBrowse link
G ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:78,703,728...79,076,861
Ensembl chr15:97,999,448...98,366,893 		JBrowse link
G ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:57,857,112...58,011,181
Ensembl chr16:77,291,148...77,445,664 		JBrowse link
G ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:124,873,078...125,153,730
Ensembl chr 5:130,635,937...130,893,174 		JBrowse link
G ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:174,264,811...174,502,817
Ensembl chr 5:181,557,928...181,786,175 		JBrowse link
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18454205) Ensembl
TreeGrafter
MGI
InterPro		 PMID:18454205 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr12:45,178,058...45,369,042
Ensembl chr12:46,046,555...46,236,676 		JBrowse link
G ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:51,648,293...51,941,329
Ensembl chr 4:57,966,197...58,259,404 		JBrowse link
G ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:136,602,140...136,611,469
Ensembl chr 1:140,514,247...140,523,623 		JBrowse link
G ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr21:13,352,222...13,402,165
Ensembl chr21:26,744,807...26,788,736 		JBrowse link
G ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif 6 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:48,517,814...48,854,545
Ensembl chr 5:50,181,529...50,502,433 		JBrowse link
G ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr15:61,291,451...61,295,148 JBrowse link
G ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:125,220,258...125,244,841
Ensembl chr11:129,112,176...129,136,928 		JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 3:64,415,621...64,590,984
Ensembl chr 3:65,792,223...65,967,631 		JBrowse link
G ADAMTSL1 ADAMTS like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:17,714,454...18,724,606
Ensembl chr 9:18,807,435...19,218,181 		JBrowse link
G ADAMTSL2 ADAMTS like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25762570) Ensembl
TreeGrafter
MGI
InterPro		 PMID:25762570 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:104,658,540...104,698,854
Ensembl chr 9:133,269,369...133,309,602 		JBrowse link
G ADAMTSL3 ADAMTS like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:61,567,731...61,953,255
Ensembl chr15:81,538,868...81,920,292 		JBrowse link
G ADAMTSL4 ADAMTS like 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:125,893,739...125,905,337
Ensembl chr 1:129,541,795...129,553,376 		JBrowse link
G ADAMTSL5 ADAMTS like 5 involved_in IEA TreeGrafter GO_REF:0000118
G AGT angiotensinogen acts_upstream_of_or_within ISO (PMID:9734405) MGI PMID:9734405 NCBI chr 1:206,252,141...206,263,830
Ensembl chr 1:211,279,015...211,291,044 		JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO (PMID:16407979) MGI PMID:16407979 NCBI chr11:6,526,477...6,550,509
Ensembl chr11:6,209,812...6,225,972 		JBrowse link
G APBB2 amyloid beta precursor protein binding family B member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16407979) Ensembl
MGI		 PMID:16407979 GO_REF:0000107 NCBI chr 4:35,133,490...35,538,443
Ensembl chr 4:40,988,428...41,189,064 		JBrowse link
G APLP1 amyloid beta precursor like protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15385965) Ensembl
MGI		 PMID:15385965 GO_REF:0000107 NCBI chr19:32,786,362...32,797,728
Ensembl chr19:41,534,569...41,545,906 		JBrowse link
G APLP2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chr11:124,881,191...124,944,472
Ensembl chr11:128,775,329...128,847,482 		JBrowse link
G APP amyloid beta precursor protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15385965) Ensembl
MGI		 PMID:15385965 GO_REF:0000107 NCBI chr21:12,324,455...12,608,594
Ensembl chr21:25,684,355...25,995,072 		JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:1115218) MGI PMID:1115218 NCBI chr  X:67,093,675...67,231,318
Ensembl chr  X:77,255,312...77,342,756 		JBrowse link
G ATXN1L ataxin 1 like acts_upstream_of_or_within ISO (PMID:22014525) MGI PMID:22014525 NCBI chr16:53,153,416...53,165,311 JBrowse link
G B4GALT1 beta-1,4-galactosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900463) Ensembl
MGI		 PMID:11900463 GO_REF:0000107 NCBI chr 9:32,889,124...32,945,759
Ensembl chr 9:33,691,733...33,754,192 		JBrowse link
G BCL3 BCL3 transcription coactivator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10586052) Ensembl
MGI		 PMID:10586052 GO_REF:0000107 NCBI chr19:41,696,162...41,708,485
Ensembl chr19:50,304,171...50,313,005 		JBrowse link
G C5H6orf15 chromosome 5 C6orf15 homolog acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chr 6:30,857,286...30,858,695
Ensembl chr 6:31,722,844...31,724,084 		JBrowse link
G CCDC80 coiled-coil domain containing 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:109,753,743...109,789,769
Ensembl chr 3:116,678,161...116,712,611 		JBrowse link
G CCN1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 1:118,138,739...118,141,681
Ensembl chr 1:86,994,296...86,997,147 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259 		JBrowse link
G COL15A1 collagen type XV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:70,033,818...70,160,659
Ensembl chr 9:98,153,379...98,278,663 		JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain acts_upstream_of_or_within ISO (PMID:15254016) MGI PMID:15254016 NCBI chr21:31,720,358...31,834,470 JBrowse link
G COL19A1 collagen type XIX alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15302855) Ensembl
MGI		 PMID:15302855 GO_REF:0000107 NCBI chr 6:67,706,969...68,049,323
Ensembl chr 6:71,006,284...71,340,612 		JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:44,274,349...44,291,764
Ensembl chr17:49,150,677...49,166,677 		JBrowse link
G COL1A2 collagen type I alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:86,344,657...86,381,282
Ensembl chr 7:99,935,185...99,971,803 		JBrowse link
G COL22A1 collagen type XXII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:135,241,159...135,567,550
Ensembl chr 8:138,347,432...138,633,084 		JBrowse link
G COL24A1 collagen type XXIV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:118,289,852...118,694,258
Ensembl chr 1:87,150,219...87,547,919 		JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22206015) Ensembl
TreeGrafter
MGI		 PMID:22206015 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:85,252,277...85,410,714
Ensembl chr 9:113,627,633...113,775,284 		JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:8,093,060...8,260,276
Ensembl chr 7:7,446,107...7,611,876 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:91,282,617...91,440,187
Ensembl chr13:110,407,009...110,562,529 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:114,410,703...114,559,336
Ensembl chr2B:233,294,783...233,371,021 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:97,538,978...97,797,019
Ensembl chr  X:108,008,689...108,166,095 		JBrowse link
G COL4A6 collagen type IV alpha 6 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10965041) Ensembl
TreeGrafter
MGI		 PMID:10965041 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:97,254,306...97,539,473
Ensembl chr  X:107,625,718...107,908,363 		JBrowse link
G COL5A1 collagen type V alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:105,746,388...105,956,280
Ensembl chr 9:134,342,955...134,544,651 		JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:76,339,756...76,487,133
Ensembl chr2B:194,259,316...194,407,237 		JBrowse link
G COL5A3 collagen type V alpha 3 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:9,512,028...9,563,306
Ensembl chr19:10,174,519...10,218,974 		JBrowse link
G COL7A1 collagen type VII alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:48,485,922...48,518,036
Ensembl chr 3:49,568,163...49,598,919 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:68,051,446...68,138,715
Ensembl chr 6:71,349,471...71,436,370 		JBrowse link
G COL9A2 collagen type IX alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:39,596,050...39,613,316
Ensembl chr 1:40,918,814...40,935,953 		JBrowse link
G COL9A3 collagen type IX alpha 3 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:59,203,959...59,229,221
Ensembl chr20:60,499,089...60,521,871 		JBrowse link
G COLQ collagen like tail subunit of asymmetric acetylcholinesterase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:15,373,589...15,447,613
Ensembl chr 3:15,712,630...15,784,299 		JBrowse link
G CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr16:65,488,965...65,578,502
Ensembl chr16:84,828,816...84,916,183 		JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21148564) Ensembl
MGI		 PMID:21148564 GO_REF:0000107 NCBI chr 8:18,626,998...18,980,416
Ensembl chr 8:15,576,416...15,904,123 		JBrowse link
G DMP1 dentin matrix acidic phosphoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) InterPro
TreeGrafter
MGI
Ensembl		 PMID:18757743 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:79,943,709...79,957,430
Ensembl chr 4:90,675,812...90,682,314 		JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO (PMID:21972064) MGI PMID:21972064 NCBI chr 7:148,952,823...149,034,578
Ensembl chr 7:160,646,321...160,726,447 		JBrowse link
G ECM2 extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:63,617,088...63,659,055
Ensembl chr 9:91,691,721...91,718,230 		JBrowse link
G EGFL6 EGF like domain multiple 6 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chr  X:6,177,141...6,240,969
Ensembl chr  X:13,465,605...13,529,474 		JBrowse link
G EGFLAM EGF like, fibronectin type III and laminin G domains involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 5:71,909,106...72,119,958
Ensembl chr 5:76,944,818...77,073,380 		JBrowse link
G ELF3 E74 like ETS transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11984530) Ensembl
MGI		 PMID:11984530 GO_REF:0000107 NCBI chr 1:177,607,265...177,613,234
Ensembl chr 1:181,908,747...181,915,354 		JBrowse link
G ELN elastin acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743
G EMILIN1 elastin microfibril interfacer 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9651581) Ensembl
MGI		 PMID:9651581 GO_REF:0000107 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819 		JBrowse link
G ERO1A endoplasmic reticulum oxidoreductase 1 alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22981861) Ensembl
MGI		 PMID:22981861 GO_REF:0000107 NCBI chr14:33,236,087...33,292,127
Ensembl chr14:51,520,048...51,575,798 		JBrowse link
G ERO1B endoplasmic reticulum oxidoreductase 1 beta acts_upstream_of_or_within ISO (PMID:22981861) MGI PMID:22981861 NCBI chr 1:211,782,071...211,849,308
Ensembl chr 1:216,786,605...216,850,463 		JBrowse link
G FBLN1 fibulin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) InterPro
MGI
Ensembl		 PMID:18757743 GO_REF:0000002 GO_REF:0000107 NCBI chr22:26,390,379...26,488,737
Ensembl chr22:44,582,843...44,666,011 		JBrowse link
G FBLN5 fibulin 5 acts_upstream_of_or_within ISO (PMID:18757743) MGI PMID:18757743 NCBI chr14:72,504,240...72,583,160
Ensembl chr14:91,848,430...91,927,304 		JBrowse link
G FKRP fukutin related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31296900) Ensembl
MGI		 PMID:31296900 GO_REF:0000107 NCBI chr19:43,738,339...43,748,250
Ensembl chr19:52,273,546...52,276,341 		JBrowse link
G FN1 fibronectin 1 ISO RGD PMID:12388756 RGD:1358623 NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16439479) Ensembl
MGI		 PMID:16439479 GO_REF:0000107 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949 		JBrowse link
G FOXF2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G GFAP glial fibrillary acidic protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11487638) Ensembl
MGI		 PMID:11487638 GO_REF:0000107 NCBI chr17:12,407,211...12,417,072
Ensembl chr17:12,579,754...12,591,961 		JBrowse link
G GFOD2 Gfo/Idh/MocA-like oxidoreductase domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr16:48,018,181...48,067,345
Ensembl chr16:67,407,669...67,456,632 		JBrowse link
G HPSE2 heparanase 2 (inactive) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25510506) Ensembl
TreeGrafter
MGI		 PMID:25510506 GO_REF:0000107 GO_REF:0000118 NCBI chr10:95,071,571...95,851,896
Ensembl chr10:98,592,019...99,344,132 		JBrowse link
G HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr11:43,641,323...43,817,214
Ensembl chr11:44,137,597...44,312,986 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chr 1:21,014,951...21,129,937
Ensembl chr 1:21,979,504...22,053,400 		JBrowse link
G IBSP integrin binding sialoprotein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:80,061,960...80,105,560
Ensembl chr 4:90,817,072...90,830,021 		JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:25410057) MGI PMID:25410057 NCBI chr 4:1,102,288...1,120,973
Ensembl chr 4:1,020,582...1,037,877 		JBrowse link
G IMPG1 interphotoreceptor matrix proteoglycan 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32265257) Ensembl
MGI		 PMID:32265257 GO_REF:0000107 NCBI chr 6:73,765,927...73,892,918
Ensembl chr 6:77,055,866...77,211,813 		JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32265257) Ensembl
MGI		 PMID:32265257 GO_REF:0000107 NCBI chr 3:98,325,379...98,418,344
Ensembl chr 3:105,005,553...105,097,902 		JBrowse link
G ITGA8 integrin subunit alpha 8 acts_upstream_of_or_within ISO (PMID:10742111) MGI PMID:10742111 NCBI chr10:15,838,320...16,045,206
Ensembl chr10:16,114,999...16,321,360 		JBrowse link
G ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 acts_upstream_of_or_within ISO (PMID:17675295) MGI PMID:17675295 NCBI chr 3:52,719,065...52,733,507
Ensembl chr 3:53,945,141...53,959,378 		JBrowse link
G KAZALD1 Kazal type serine peptidase inhibitor domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr10:97,661,767...97,668,759
Ensembl chr10:101,137,825...101,144,156 		JBrowse link
G LGALS3 galectin 3 acts_upstream_of_or_within ISO (PMID:15800063) MGI PMID:15800063 NCBI chr14:35,715,850...35,732,263
Ensembl chr14:53,990,023...54,006,412 		JBrowse link
G LOC100992963 tenascin-X acts_upstream_of_or_within ISO (PMID:15242785) MGI PMID:15242785 NCBI chr 6:31,687,994...31,756,279
Ensembl chr 6:32,571,199...32,626,155 		JBrowse link
G MANSC4 MANSC domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:58,531,753...58,549,560
Ensembl chr12:61,158,615...61,167,381 		JBrowse link
G MATN3 matrilin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,979,188...20,000,733
Ensembl chr2A:20,095,710...20,116,015 		JBrowse link
G MIA MIA SH3 domain containing acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11839810) MGI
TreeGrafter		 PMID:11839810 GO_REF:0000118 NCBI chr19:37,818,126...37,820,832
Ensembl chr19:46,325,755...46,328,065 		JBrowse link
G MMP1 matrix metallopeptidase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,730,545...97,739,190
Ensembl chr11:101,221,393...101,230,104 		JBrowse link
G MMP10 matrix metallopeptidase 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,710,819...97,721,263
Ensembl chr11:101,201,665...101,212,103 		JBrowse link
G MMP11 matrix metallopeptidase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18622425) Ensembl
TreeGrafter
MGI		 PMID:18622425 GO_REF:0000107 GO_REF:0000118 NCBI chr22:4,528,639...4,540,118
Ensembl chr22:22,615,969...22,624,567 		JBrowse link
G MMP12 matrix metallopeptidase 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,809,644...97,822,063
Ensembl chr11:101,294,475...101,306,762 		JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,890,811...97,902,778
Ensembl chr11:101,377,001...101,387,679 		JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:3,654,125...3,665,158
Ensembl chr14:21,753,305...21,764,058 		JBrowse link
G MMP15 matrix metallopeptidase 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:38,304,856...38,326,193
Ensembl chr16:57,433,813...57,457,122 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:84,736,752...85,026,711
Ensembl chr 8:86,701,882...86,982,518 		JBrowse link
G MMP17 matrix metallopeptidase 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:129,481,501...129,505,696
Ensembl chr12:133,922,882...133,936,152 		JBrowse link
G MMP19 matrix metallopeptidase 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:33,068,282...33,075,324
Ensembl chr12:33,794,249...33,801,658 		JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:35,711,866...35,738,881
Ensembl chr16:54,812,694...54,844,279 		JBrowse link
G MMP20 matrix metallopeptidase 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,518,573...97,566,881
Ensembl chr11:101,011,084...101,059,322 		JBrowse link
G MMP21 matrix metallopeptidase 21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:122,325,909...122,338,047
Ensembl chr10:126,591,824...126,601,001 		JBrowse link
G MMP23B matrix metallopeptidase 23B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:396,629...399,103
Ensembl chr 1:1,554,922...1,557,325 		JBrowse link
G MMP24 matrix metallopeptidase 24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:31,554,770...31,606,348
Ensembl chr20:32,686,887...32,729,403 		JBrowse link
G MMP26 matrix metallopeptidase 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:5,154,066...5,158,891
Ensembl chr11:4,823,666...4,828,035 		JBrowse link
G MMP27 matrix metallopeptidase 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,630,268...97,644,959
Ensembl chr11:101,123,253...101,137,315 		JBrowse link
G MMP28 matrix metallopeptidase 28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:20,999,658...21,039,476
Ensembl chr17:21,293,767...21,323,691 		JBrowse link
G MMP3 matrix metallopeptidase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,776,729...97,784,549
Ensembl chr11:101,267,566...101,275,354 		JBrowse link
G MMP7 matrix metallopeptidase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,467,037...97,477,305
Ensembl chr11:100,960,032...100,971,099 		JBrowse link
G MMP8 matrix metallopeptidase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,650,408...97,663,731
Ensembl chr11:101,143,268...101,156,736 		JBrowse link
G MMP9 matrix metallopeptidase 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800063) Ensembl
TreeGrafter
MGI		 PMID:15800063 GO_REF:0000107 GO_REF:0000118 NCBI chr20:42,346,305...42,354,018
Ensembl chr20:43,432,389...43,440,129 		JBrowse link
G MPZL3 myelin protein zero like 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15482472) Ensembl
MGI		 PMID:15482472 GO_REF:0000107 NCBI chr11:113,063,957...113,089,929
Ensembl chr11:116,996,090...117,022,051 		JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16554364) Ensembl
MGI		 PMID:16554364 GO_REF:0000107 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389 		JBrowse link
G NDNF neuron derived neurotrophic factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:113,242,800...113,283,834
Ensembl chr 4:124,386,606...124,422,793 		JBrowse link
G NF1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16835260) Ensembl
MGI		 PMID:16835260 GO_REF:0000107 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295 		JBrowse link
G NFKB2 nuclear factor kappa B subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10586052) Ensembl
MGI		 PMID:10586052 GO_REF:0000107 NCBI chr10:98,997,604...99,006,407
Ensembl chr10:102,463,503...102,471,907 		JBrowse link
G NID1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 1:211,543,294...211,631,769
Ensembl chr 1:216,544,829...216,632,935 		JBrowse link
G NOX1 NADPH oxidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16386251) Ensembl
MGI		 PMID:16386251 GO_REF:0000107 NCBI chr  X:90,046,023...90,076,968
Ensembl chr  X:100,182,398...100,215,192 		JBrowse link
G NPHP3 nephrocystin 3 acts_upstream_of_or_within ISO (PMID:7539536) MGI PMID:7539536 NCBI chr 3:129,753,399...129,795,300 JBrowse link
G NPNT nephronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 4:98,365,727...98,445,746
Ensembl chr 4:108,974,971...109,054,671 		JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16424942) Ensembl
MGI		 PMID:16424942 GO_REF:0000107 NCBI chr 6:105,965,478...105,988,213
Ensembl chr 6:109,831,223...109,851,436 		JBrowse link
G OLFML2A olfactomedin like 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 9:95,897,823...95,936,218
Ensembl chr 9:124,424,301...124,453,168 		JBrowse link
G OLFML2B olfactomedin like 2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 1:137,401,323...137,442,611
Ensembl chr 1:141,200,355...141,241,629 		JBrowse link
G PAPLN papilin, proteoglycan like sulfated glycoprotein involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr14:53,816,437...53,853,704
Ensembl chr14:72,679,910...72,712,009 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15543606) Ensembl
MGI		 PMID:15543606 GO_REF:0000107 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097 		JBrowse link
G POMT1 protein O-mannosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383666) Ensembl
MGI		 PMID:15383666 GO_REF:0000107 NCBI chr 9:102,625,290...102,646,066
Ensembl chr 9:131,265,750...131,285,881 		JBrowse link
G POSTN periostin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16314533) Ensembl
TreeGrafter
MGI		 PMID:16314533 GO_REF:0000107 GO_REF:0000118 NCBI chr13:18,779,297...18,815,207
Ensembl chr13:37,368,030...37,407,212 		JBrowse link
G PRDX4 peroxiredoxin 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22981861) Ensembl
MGI		 PMID:22981861 GO_REF:0000107 NCBI chr  X:16,266,501...16,285,458
Ensembl chr  X:23,641,701...23,660,267 		JBrowse link
G PTK2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:14642275) MGI PMID:14642275 NCBI chr 8:137,330,777...137,677,306
Ensembl chr 8:140,412,773...140,684,898 		JBrowse link
G PTX3 pentraxin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17675295) Ensembl
MGI		 PMID:17675295 GO_REF:0000107 NCBI chr 3:154,485,470...154,492,293
Ensembl chr 3:162,537,577...162,543,652 		JBrowse link
G PXDN peroxidasin involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:1,584,901...1,699,675
Ensembl chr2A:1,582,193...1,692,033 		JBrowse link
G RECK reversion inducing cysteine rich protein with kazal motifs involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11747814) Ensembl
TreeGrafter
MGI		 PMID:11747814 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:35,886,741...35,974,133
Ensembl chr 9:36,699,631...36,774,116 		JBrowse link
G RXFP1 relaxin family peptide receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15256493) Ensembl
MGI		 PMID:15256493 GO_REF:0000107 NCBI chr 4:150,829,896...150,973,358
Ensembl chr 4:162,648,858...162,784,422 		JBrowse link
G SERAC1 serine active site containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 6:156,009,815...156,067,675
Ensembl chr 6:158,068,838...158,126,603 		JBrowse link
G SERPINB5 serpin family B member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18593913) Ensembl
MGI		 PMID:18593913 GO_REF:0000107 NCBI chr18:56,836,403...56,864,533
Ensembl chr18:60,148,552...60,176,624 		JBrowse link
G SLC39A8 solute carrier family 39 member 8 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:29337306)
(MGI:6117959|PMID:29337306)		 UniProt
Ensembl		 PMID:29337306 GO_REF:0000107 MGI:6117959 NCBI chr 4:94,675,458...94,770,380
Ensembl chr 4:105,339,488...105,433,568 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO (PMID:18267097) MGI PMID:18267097 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G SMOC1 SPARC related modular calcium binding 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chr14:50,472,951...50,622,267
Ensembl chr14:69,345,185...69,493,887 		JBrowse link
G SMOC2 SPARC related modular calcium binding 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743) MGI
TreeGrafter		 PMID:18757743 GO_REF:0000118 NCBI chr 6:166,430,178...166,664,577
Ensembl chr 6:171,366,929...171,589,084 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:17350610)
(PMID:24191021)		 MGI PMID:17350610 PMID:24191021 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SPINT1 serine peptidase inhibitor, Kunitz type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17174946) Ensembl
TreeGrafter
MGI		 PMID:17174946 GO_REF:0000107 GO_REF:0000118 NCBI chr15:19,786,621...19,800,297
Ensembl chr15:38,036,638...38,050,303 		JBrowse link
G SPOCK2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr10:68,522,002...68,552,001
Ensembl chr10:71,048,773...71,074,203 		JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:11784073), (PMID:15528466) MGI PMID:11784073 PMID:15528466 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TGFBI transforming growth factor beta induced involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:131,420,403...131,455,265
Ensembl chr 5:137,559,321...137,596,392 		JBrowse link
G THSD4 thrombospondin type 1 domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:50,067,560...50,732,761
Ensembl chr15:68,859,819...69,491,696 		JBrowse link
G TNF tumor necrosis factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15381731) Ensembl
MGI		 PMID:15381731 GO_REF:0000107 NCBI chr 6:31,236,650...31,239,423
Ensembl chr 6:32,126,618...32,129,381 		JBrowse link
G TNFRSF11B TNF receptor superfamily member 11b involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr 8:115,614,778...115,643,387
Ensembl chr 8:118,134,305...118,162,422 		JBrowse link
G TNR tenascin R involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10341229), (PMID:11077416), (PMID:16870730) Ensembl
MGI		 PMID:10341229 PMID:11077416 PMID:16870730 GO_REF:0000107 NCBI chr 1:150,826,892...151,257,301
Ensembl chr 1:154,532,582...154,615,538 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537898) Ensembl
MGI		 PMID:16537898 GO_REF:0000107 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234 		JBrowse link
G VIT vitrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
TreeGrafter
MGI		 PMID:18757743 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:36,726,717...36,841,491
Ensembl chr2A:37,490,294...37,604,177 		JBrowse link
G VTN vitronectin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18757743) Ensembl
MGI		 PMID:18757743 GO_REF:0000107 NCBI chr17:28,403,813...28,407,202
Ensembl chr17:28,906,508...28,909,583 		JBrowse link
G VWA1 von Willebrand factor A domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18757743)
(PMID:19279005)		 MGI
Ensembl		 PMID:18757743 PMID:19279005 GO_REF:0000107 NCBI chr 1:192,970...198,099 JBrowse link
G WDR72 WD repeat domain 72 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:35181734) MGI
Ensembl		 PMID:35181734 GO_REF:0000107 NCBI chr15:32,449,840...32,695,815
Ensembl chr15:50,775,112...51,023,853 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17943183) Ensembl
MGI		 PMID:17943183 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
gene expression involved in extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:23900597) MGI PMID:23900597 NCBI chr 4:79,903,923...79,909,836 JBrowse link
G PBXIP1 PBX homeobox interacting protein 1 acts_upstream_of_or_within ISO (PMID:30659184) MGI PMID:30659184 NCBI chr 1:130,292,611...130,304,667 JBrowse link
G ZNF469 zinc finger protein 469 acts_upstream_of_or_within ISO (PMID:34368841) MGI PMID:34368841 NCBI chr16:68,777,496...69,151,995
Ensembl chr16:88,803,202...88,815,390 		JBrowse link
glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL4A2 collagen type IV alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:91,440,314...91,650,138
Ensembl chr13:110,563,119...110,767,530 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:114,410,703...114,559,336
Ensembl chr2B:233,294,783...233,371,021 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10534397) Ensembl
TreeGrafter
MGI		 PMID:10534397 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:114,227,135...114,410,564
Ensembl chr2B:233,065,678...233,205,892 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18480751) Ensembl
MGI		 PMID:18480751 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G MPV17 mitochondrial inner membrane protein MPV17 involved_in ISO (MGI:3776221|PMID:16041630) UniProt PMID:16041630 MGI:3776221 NCBI chr2A:27,311,551...27,325,249
Ensembl chr2A:27,399,258...27,414,090 		JBrowse link
G MYO1E myosin IE involved_in ISO (MGI:4441423|PMID:19005011) UniProt PMID:19005011 MGI:4441423 NCBI chr15:38,106,599...38,343,040
Ensembl chr15:56,413,570...56,649,722 		JBrowse link
G NID1 nidogen 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14566019) Ensembl
MGI		 PMID:14566019 GO_REF:0000107 NCBI chr 1:211,543,294...211,631,769
Ensembl chr 1:216,544,829...216,632,935 		JBrowse link
G NPHS1 NPHS1 adhesion molecule, nephrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,742,802...32,770,600
Ensembl chr19:41,492,444...41,518,471 		JBrowse link
G SULF1 sulfatase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:65,992,961...66,194,112
Ensembl chr 8:67,744,801...67,848,704 		JBrowse link
G SULF2 sulfatase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:43,992,927...44,122,598
Ensembl chr20:45,074,069...45,173,893 		JBrowse link
G WT1 WT1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:32,349,807...32,398,494
Ensembl chr11:32,238,720...32,287,249 		JBrowse link
intercellular bridge organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TEX14 testis expressed 14, intercellular bridge forming factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:52,627,335...52,768,926
Ensembl chr17:57,480,369...57,621,055 		JBrowse link
metanephric glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB2 laminin subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16886065), (PMID:7670489) Ensembl
MGI		 PMID:7670489 PMID:16886065 GO_REF:0000107 NCBI chr 3:49,045,419...49,057,340
Ensembl chr 3:50,125,460...50,137,074 		JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHADL chondroadherin like involved_in ISO (PMID:25451920) UniProt PMID:25451920 NCBI chr22:22,106,953...22,138,122 JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525 		JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANTXR1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25572963) Ensembl
MGI		 PMID:25572963 GO_REF:0000107 NCBI chr2A:69,054,253...69,290,554
Ensembl chr2A:70,175,982...70,412,454 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma involved_in ISO (PMID:25704091) BHF-UCL PMID:25704091 NCBI chr 3:12,215,322...12,361,669
Ensembl chr 3:12,622,397...12,705,060 		JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:94,337,275...94,539,229
Ensembl chr 1:93,080,452...93,285,587 		JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADTRP androgen dependent TFPI regulating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:11,550,584...11,648,755
Ensembl chr 6:11,829,782...11,895,656 		JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G TNFRSF1A TNF receptor superfamily member 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,457,617...6,470,969
Ensembl chr12:6,374,257...6,387,613 		JBrowse link
G TNFRSF1B TNF receptor superfamily member 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:10,915,743...10,957,765
Ensembl chr 1:12,130,663...12,172,646 		JBrowse link
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CST3 cystatin C involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:23,583,043...23,587,399
Ensembl chr20:23,935,942...23,940,425 		JBrowse link
G DPP4 dipeptidyl peptidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:49,285,685...49,368,056
Ensembl chr2B:166,654,659...166,736,588 		JBrowse link
G FAP fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:49,464,199...49,537,284
Ensembl chr2B:166,832,963...166,904,950 		JBrowse link
negative regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAP fibroblast activation protein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:49,464,199...49,537,284
Ensembl chr2B:166,832,963...166,904,950 		JBrowse link
polarized secretion of basement membrane proteins in epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRICKLE1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr2B:8,265,626...8,574,282
Ensembl chr2B:121,840,484...122,102,793 		JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) UniProt PMID:23940118 NCBI chr 3:33,418,300...33,640,185
Ensembl chr 3:33,721,153...33,938,560 		JBrowse link
G DAG1 dystroglycan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,396,180...49,464,689
Ensembl chr 3:50,640,615...50,703,852 		JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:113,446,275...113,496,941
Ensembl chr11:117,376,205...117,426,391 		JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:108,878,798...109,120,501
Ensembl chr 3:115,745,634...116,044,586 		JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COLGALT1 collagen beta(1-O)galactosyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:17,042,743...17,070,333
Ensembl chr19:18,013,831...18,043,364 		JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913)
(PMID:26178373), (PMID:26220971), (PMID:26711913)		 UniProt PMID:26178373 PMID:26220971 PMID:26711913 MGI:5660411 MGI:5695689 MGI:6158865 NCBI chr11:61,226,755...61,233,181
Ensembl chr11:64,555,877...64,561,950 		JBrowse link
G LOC100992963 tenascin-X involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,687,994...31,756,279
Ensembl chr 6:32,571,199...32,626,155 		JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,453,872...29,624,665
Ensembl chr13:48,155,795...48,324,575 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in
acts_upstream_of		 IEA
ISO		 (PMID:30729664) Ensembl
BHF-UCL		 PMID:30729664 GO_REF:0000107 NCBI chr 1:206,252,141...206,263,830
Ensembl chr 1:211,279,015...211,291,044 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,077,551...27,085,437
Ensembl chr2A:27,166,747...27,174,525 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 ISO RGD PMID:27488450 RGD:152995505 NCBI chr 1:10,436,532...10,454,023
Ensembl chr 1:11,654,963...11,661,526 		JBrowse link
G RGCC regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,639,289...22,652,594
Ensembl chr13:41,228,643...41,241,909 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:30729664) Ensembl
BHF-UCL		 PMID:30729664 GO_REF:0000107 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:20881014) MGI PMID:20881014 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of		 IEA
ISO		 (MGI:5775885|PMID:24279830) Ensembl
BHF-UCL		 PMID:24279830 GO_REF:0000107 MGI:5775885 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:28251559) BHF-UCL
Ensembl		 PMID:28251559 GO_REF:0000107 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748 		JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen ISO RGD PMID:21419085 RGD:5129171 NCBI chr 1:206,252,141...206,263,830
Ensembl chr 1:211,279,015...211,291,044 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,765,161...6,777,728
Ensembl chr20:6,546,173...6,558,610 		JBrowse link
G CPB2 carboxypeptidase B2 ISO RGD PMID:23369837 RGD:7243115 NCBI chr13:26,926,788...26,979,767 JBrowse link
G IER3IP1 immediate early response 3 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:40,543,039...40,564,372
Ensembl chr18:43,903,315...43,924,901 		JBrowse link
G RGCC regulator of cell cycle involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:22,639,289...22,652,594
Ensembl chr13:41,228,643...41,241,909 		JBrowse link
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARMIL2 capping protein regulator and myosin 1 linker 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:47,989,040...48,001,455
Ensembl chr16:67,378,353...67,390,709 		JBrowse link
G CLASP1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chr2B:8,265,626...8,574,282
Ensembl chr2B:121,840,484...122,102,793 		JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) UniProt PMID:24859005 NCBI chr 3:33,418,300...33,640,185
Ensembl chr 3:33,721,153...33,938,560 		JBrowse link
G DDR2 discoidin domain receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:138,048,730...138,200,426
Ensembl chr 1:141,932,158...141,990,766 		JBrowse link
G FSCN1 fascin actin-bundling protein 1 involved_in ISO (PMID:20137952) UniProt PMID:20137952 NCBI chr 7:5,848,902...5,862,756 JBrowse link
G IL6 interleukin 6 involved_in ISO (PMID:26587789) ARUK-UCL PMID:26587789 NCBI chr 7:23,415,922...23,420,767 JBrowse link
G MELTF melanotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:194,345,474...194,373,690
Ensembl chr 3:204,262,182...204,310,710 		JBrowse link
G PDPN podoplanin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:12,728,569...12,759,781
Ensembl chr 1:13,728,233...13,759,584 		JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (MGI:5688835|PMID:21984612)
(PMID:21984612)		 UniProt PMID:21984612 MGI:5688835 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
positive regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO RGD PMID:19846571 RGD:8693597 NCBI chr 9:101,834,189...102,005,811
Ensembl chr 9:130,484,333...130,652,941 		JBrowse link
G CFLAR CASP8 and FADD like apoptosis regulator ISO RGD PMID:24691542 RGD:11341715 NCBI chr2B:88,373,057...88,429,959
Ensembl chr2B:206,528,943...206,577,045 		JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:29656108 RGD:150520032 NCBI chr 1:59,151,079...59,184,625
Ensembl chr 1:60,856,269...60,889,810 		JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,453,872...29,624,665
Ensembl chr13:48,155,795...48,324,575 		JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AEBP1 AE binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:44,818,620...44,828,914
Ensembl chr 7:44,886,238...44,896,194 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20951202) Ensembl
MGI		 PMID:20951202 GO_REF:0000107 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240 		JBrowse link
G EFEMP2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5776647|PMID:26690653) UniProt PMID:26690653 MGI:5776647 NCBI chr11:61,226,755...61,233,181
Ensembl chr11:64,555,877...64,561,950 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGT angiotensinogen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:206,252,141...206,263,830
Ensembl chr 1:211,279,015...211,291,044 		JBrowse link
G HAS2 hyaluronan synthase 2 ISO RGD PMID:27094859 RGD:12910548 NCBI chr 8:118,313,186...118,342,160
Ensembl chr 8:121,072,154...121,089,365 		JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:6370101|PMID:31319059)
(PMID:31319059)		 BHF-UCL
Ensembl		 PMID:31319059 GO_REF:0000107 MGI:6370101 NCBI chr 1:42,602,333...42,624,471
Ensembl chr 1:43,979,838...44,002,167 		JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIC1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,449,982...5,598,891
Ensembl chr 9:5,633,779...5,779,884 		JBrowse link
regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDR1 discoidin domain receptor tyrosine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:30,625,871...30,645,066
Ensembl chr 6:31,496,047...31,513,455 		JBrowse link
G ETS1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:16738537 RGD:2313717 NCBI chr11:123,272,111...123,400,413
Ensembl chr11:127,174,721...127,288,673 		JBrowse link
G FGFR4 fibroblast growth factor receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:172,386,443...172,400,271
Ensembl chr 5:179,454,995...179,467,605 		JBrowse link
regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20980600) Ensembl
MGI		 PMID:20980600 GO_REF:0000107 NCBI chr 9:101,834,189...102,005,811
Ensembl chr 9:130,484,333...130,652,941 		JBrowse link
G ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chr 1:154,586,423...154,711,621
Ensembl chr 1:158,280,994...158,313,915 		JBrowse link
G ANGPTL7 angiopoietin like 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,955,033...9,961,886
Ensembl chr 1:11,176,355...11,183,048 		JBrowse link
G AXIN2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086 		JBrowse link
G ITGB3 integrin subunit beta 3 acts_upstream_of_or_within ISO (PMID:22984613) MGI PMID:22984613 NCBI chr17:10,134,450...10,194,596
Ensembl chr17:10,353,111...10,392,382 		JBrowse link
G LEMD3 LEM domain containing 3 acts_upstream_of_or_within ISO (PMID:16943282) MGI PMID:16943282 NCBI chr12:23,668,368...23,747,369
Ensembl chr12:24,172,749...24,252,314 		JBrowse link
G PRDM5 PR/SET domain 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:112,896,606...113,127,400
Ensembl chr 4:124,036,911...124,252,928 		JBrowse link
G RECK reversion inducing cysteine rich protein with kazal motifs involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,886,741...35,974,133
Ensembl chr 9:36,699,631...36,774,116 		JBrowse link
G SLC2A10 solute carrier family 2 member 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:26376865) ARUK-UCL
Ensembl		 PMID:26376865 GO_REF:0000107 NCBI chr20:43,043,801...43,068,304
Ensembl chr20:44,128,837...44,153,148 		JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24038871) Ensembl
MGI		 PMID:24038871 GO_REF:0000107 NCBI chr20:811,907...817,971 JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:21780244) MGI PMID:21780244 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G ZNF469 zinc finger protein 469 involved_in ISO (PMID:21664999) ARUK-UCL PMID:21664999 NCBI chr16:68,777,496...69,151,995
Ensembl chr16:88,803,202...88,815,390 		JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17881493) Ensembl
MGI		 PMID:17881493 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16786
    cellular process 16372
      cellular component organization or biogenesis 6710
        cellular component organization 6501
          extracellular structure organization 316
            extracellular matrix organization + 315
            intercellular bridge organization + 1
paths to the root