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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA methylation involved in embryo development
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Accession:GO:0043045 term browser browse the term
Definition:The covalent transfer of a methyl group to C-5 of cytosine that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:related_synonym: de novo DNA methylation


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DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IEA
ISO
GO_REF:0000107
MGI:1857157 (MGI:49689|PMID:1606615)
MGI:3613486|MGI:5566775 (MGI:6270117|PMID:29117290)
Ensembl
RGD
PMID:1606615 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6270117 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha acts_upstream_of_or_within
involved_in
ISO MGI:1261819 (MGI:1347183|PMID:10555141), (MGI:5014027|PMID:20385583)
(MGI:3045942|PMID:15215868)
RGD PMID:10555141 PMID:15215868 PMID:20385583 MGI:1347183 MGI:3045942 MGI:5014027 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta acts_upstream_of_or_within ISO MGI:1261827 (MGI:1347183|PMID:10555141), (PMID:18814855) RGD PMID:10555141 PMID:18814855 MGI:1347183 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO MGI:1928907 (MGI:5319411|PMID:22495301) RGD PMID:22495301 MGI:5319411 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Zfp57 zinc finger protein 57 involved_in ISO
ISS
(PMID:18622393)
(MGI:3826319|PMID:18854139)
GO_REF:0000024
RGD
UniProt
PMID:18622393 PMID:18854139 GO_REF:0000024 MGI:3826319 NCBI chr20:2,014,177...2,020,488
Ensembl chr20:2,014,170...2,020,537
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 involved_in IBA
ISO
PMID:21873635
(MGI:5762940|PMID:23560077)
RGD PMID:23560077, PMID:21873635 MGI:5762940, RGD:13792537 NCBI chr 6:11,014,596...11,063,509
Ensembl chr 6:11,022,034...11,063,092
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in ISO (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) RGD PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015759.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:74,094,670...74,095,146 JBrowse link
G AABR07017902.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:32,412,245...32,412,709 JBrowse link
G AABR07026842.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:2,920,610...2,921,083 JBrowse link
G AABR07058017.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:98,734,716...98,735,192 JBrowse link
G AABR07061871.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:150,199,627...150,200,088 JBrowse link
G Dppa3 developmental pluripotency-associated 3 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
GO_REF:0000024
RGD
UniProt
PMID:17143267 PMID:21407207 PMID:22722204, PMID:21873635 GO_REF:0000024 MGI:5432962 MGI:5447615 MGI:5465527, RGD:13792537 NCBI chr 4:155,437,675...155,441,059
Ensembl chr 3:111,298,713...111,299,189
Ensembl chr 4:111,298,713...111,299,189
JBrowse link
G Dppa3l1 developmental pluripotency associated 3-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:60,683,180...60,683,658
Ensembl chr 8:60,683,183...60,683,632
JBrowse link
G LOC679766 similar to developmental pluripotency-associated 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:74,094,652...74,095,296 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19599
    multicellular organismal process 8863
      multicellular organism development 5617
        embryo development 1310
          changes to DNA methylation involved in embryo development 15
            DNA methylation involved in embryo development 15
              DNA demethylation of male pronucleus 2
              chromatin reprogramming in the zygote + 10
Path 2
Term Annotations click to browse term
  biological_process 19599
    metabolic process 11860
      cellular metabolic process 10814
        heterocycle metabolic process 5545
          nucleobase-containing compound metabolic process 5411
            nucleic acid metabolic process 4921
              DNA metabolic process 887
                DNA modification 107
                  DNA methylation or demethylation 94
                    DNA methylation 77
                      DNA methylation involved in embryo development 15
                        DNA demethylation of male pronucleus 2
                        chromatin reprogramming in the zygote + 10
paths to the root