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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA methylation involved in embryo development
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Accession:GO:0043045 term browser browse the term
Definition:The covalent transfer of a methyl group to C-5 of cytosine that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:related_synonym: de novo DNA methylation


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DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT1 DNA methyltransferase 1 involved_in
acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IEA
ISO
(MGI:6151717|PMID:27841881)
(MGI:6270117|PMID:29117290)
(MGI:49689|PMID:1606615)
Ensembl
MGI
PMID:1606615 PMID:27841881 PMID:29117290 GO_REF:0000107 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6151717|PMID:27841881)
(MGI:5014027|PMID:20385583)
(MGI:1347183|PMID:10555141)
Ensembl
MGI
PMID:10555141 PMID:20385583 PMID:27841881 GO_REF:0000107 MGI:1347183 MGI:5014027 MGI:6151717 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta acts_upstream_of_or_within ISO (PMID:18814855)
(MGI:6151717|PMID:27841881)
(MGI:1347183|PMID:10555141)
UniProt
MGI
PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5319411|PMID:22495301) Ensembl
MGI
PMID:22495301 GO_REF:0000107 MGI:5319411 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZDBF2 zinc finger DBF-type containing 2 acts_upstream_of_or_within ISO (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr15:109,563,445...109,593,858
Ensembl chr15:109,563,440...109,589,700
JBrowse link
G ZFP57 ZFP57 zinc finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:18622393)
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
UniProt
MGI
PMID:18622393 PMID:18854139 PMID:33500348 MGI:3826319 MGI:6506156 NCBI chr 7:22,607,420...22,612,064
Ensembl chr 7:22,605,125...22,612,064
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALM2 calmodulin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:93,371,765...93,386,378
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G STPG4 sperm-tail PG-rich repeat containing 4 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:93,386,523...93,438,070
Ensembl chr 3:93,372,045...93,438,068
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:68,918,896...69,020,406
Ensembl chr 3:68,918,933...69,020,986
JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPPA3 developmental pluripotency associated 3 involved_in ISO (MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207) UniProt PMID:17143267 PMID:21407207 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 NCBI chr 5:62,861,492...62,868,131 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16579
    multicellular organismal process 8041
      multicellular organism development 5301
        embryo development 1263
          changes to DNA methylation involved in embryo development 10
            DNA methylation involved in embryo development 10
              DNA demethylation of male pronucleus 3
              chromatin reprogramming in the zygote + 4
Path 2
Term Annotations click to browse term
  biological_process 16579
    metabolic process 10421
      cellular metabolic process 9468
        heterocycle metabolic process 5042
          nucleobase-containing compound metabolic process 4915
            nucleic acid metabolic process 4497
              DNA metabolic process 814
                DNA modification 99
                  DNA methylation or demethylation 87
                    DNA methylation 71
                      DNA methylation involved in embryo development 10
                        DNA demethylation of male pronucleus 3
                        chromatin reprogramming in the zygote + 4
paths to the root