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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA methylation involved in embryo development
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Accession:GO:0043045 term browser browse the term
Definition:The covalent transfer of a methyl group to C-5 of cytosine that contributes to the epigenetic regulation of embryonic gene expression.
Synonyms:related_synonym: de novo DNA methylation



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DNA methylation involved in embryo development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt1 DNA methyltransferase (cytosine-5) 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
IMP
IGI
(MGI:49689|PMID:1606615)
(MGI:6151717|PMID:27841881)
(MGI:6270117|PMID:29117290)
MGI PMID:1606615 PMID:27841881 PMID:29117290 MGI:49689 MGI:6151717 MGI:6270117 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Dnmt3a DNA methyltransferase 3A involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:3045942|PMID:15215868)
(MGI:6151717|PMID:27841881)
(MGI:1347183|PMID:10555141)
(MGI:5014027|PMID:20385583)
UniProt
MGI
PMID:10555141 PMID:15215868 PMID:20385583 PMID:27841881 MGI:1347183 MGI:3045942 MGI:5014027 MGI:6151717 NCBI chr12:3,801,559...3,914,443
Ensembl chr12:3,806,007...3,914,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B acts_upstream_of_or_within IGI
IEP
(MGI:1347183|PMID:10555141)
(MGI:6151717|PMID:27841881)
(PMID:18814855)
MGI
UniProt
PMID:10555141 PMID:18814855 PMID:27841881 MGI:1347183 MGI:6151717 NCBI chr 2:153,649,411...153,687,730
Ensembl chr 2:153,649,450...153,687,730
JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within IMP (MGI:5319411|PMID:22495301) MGI PMID:22495301 MGI:5319411 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
G Zdbf2 zinc finger, DBF-type containing 2 acts_upstream_of_or_within IMP (MGI:6151717|PMID:27841881) MGI PMID:27841881 MGI:6151717 NCBI chr 1:63,200,358...63,314,576
Ensembl chr 1:63,273,265...63,314,576
JBrowse link
G Zfp57 zinc finger protein 57 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:6506156|PMID:33500348)
(MGI:3826319|PMID:18854139)
MGI
UniProt
PMID:18854139 PMID:33500348 GO_REF:0000096 MGI:3826319 MGI:4834177 MGI:6506156 NCBI chr17:37,001,163...37,010,729
Ensembl chr17:37,001,163...37,010,635
JBrowse link
DNA demethylation of male pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm tail PG rich repeat containing 4 involved_in IMP
IBA
(MGI:5762940|PMID:23560077)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:23560077 MGI:5762940 MGI:6201960 NCBI chr17:87,389,570...87,428,081
Ensembl chr17:87,389,571...87,427,741
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IMP (MGI:5289702|PMID:21892189), (MGI:5432962|PMID:22722204), (MGI:5465527|PMID:21407207) UniProt PMID:21407207 PMID:21892189 PMID:22722204 MGI:5289702 MGI:5432962 MGI:5465527 NCBI chr 6:83,362,373...83,457,208
Ensembl chr 6:83,362,373...83,459,084
JBrowse link
protection of DNA demethylation of female pronucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dppa3 developmental pluripotency-associated 3 involved_in IMP
IBA
(MGI:5432962|PMID:22722204), (MGI:5447615|PMID:17143267), (MGI:5465527|PMID:21407207)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:17143267 PMID:21407207 PMID:21873635 PMID:22722204 MGI:5432962 MGI:5447615 MGI:5465527 MGI:6201960 NCBI chr 6:122,626,424...122,630,271
Ensembl chr 6:122,626,410...122,630,272
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 29900
    multicellular organismal process 8950
      multicellular organism development 5820
        embryo development 1319
          changes to DNA methylation involved in embryo development 9
            DNA methylation involved in embryo development 9
              DNA demethylation of male pronucleus 2
              chromatin reprogramming in the zygote + 3
Path 2
Term Annotations click to browse term
  biological_process 29900
    metabolic process 11255
      cellular metabolic process 10089
        heterocycle metabolic process 5389
          nucleobase-containing compound metabolic process 5250
            nucleic acid metabolic process 4803
              DNA metabolic process 883
                DNA modification 108
                  DNA methylation or demethylation 95
                    DNA methylation 78
                      DNA methylation involved in embryo development 9
                        DNA demethylation of male pronucleus 2
                        chromatin reprogramming in the zygote + 3
paths to the root