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ONTOLOGY REPORT - ANNOTATIONS


Term:costamere
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Accession:GO:0043034 term browser browse the term
Definition:Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
Synonyms:xref: Wikipedia:Costamere


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costamere term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC141959.1 ISS PMID:21940993 UniProt PMID:21940993 RGD:8554027 Ensembl chr 6:137,336,107...137,353,249 JBrowse link
G Ahnak AHNAK nucleoprotein ISS
ISO
IBA
GO_REF:0000024
(MGI:4838689|PMID:20833135)
PMID:21873635
UniProt
RGD
PMID:20833135, PMID:21873635 GO_REF:0000024, MGI:4838689, RGD:13792537 NCBI chr 1:225,184,883...225,429,638
Ensembl chr 1:225,184,939...225,215,015
JBrowse link
G Ahnak2 AHNAK nucleoprotein 2 ISO (MGI:4838689|PMID:20833135) RGD PMID:20833135 MGI:4838689 NCBI chr 6:137,335,273...137,380,219 JBrowse link
G Ank2 ankyrin 2 ISO (MGI:3610760|PMID:16292983) RGD PMID:16292983 MGI:3610760 NCBI chr 2:231,224,643...231,522,655
Ensembl chr 2:231,226,949...231,648,122
JBrowse link
G Ank3 ankyrin 3 TAS PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Cmya5 cardiomyopathy associated 5 ISO (MGI:3639834|PMID:16407236), (MGI:3793389|PMID:18252718) RGD PMID:16407236, PMID:18252718 MGI:3639834, MGI:3793389 NCBI chr 2:22,646,694...22,744,536
Ensembl chr 2:22,646,712...22,744,407
JBrowse link
G Dag1 dystroglycan 1 IDA RGD PMID:10531619 RGD:2314896 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Dmd dystrophin ISO (PMID:16000376) RGD PMID:16000376 NCBI chr  X:51,149,358...53,519,271
Ensembl chr  X:51,286,737...53,519,259
JBrowse link
G Flnc filamin C TAS PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 4:56,710,934...56,738,779
Ensembl chr 4:56,711,049...56,738,791
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 IEA
ISO
GO_REF:0000107
(MGI:3046107|PMID:15128702)
Ensembl
RGD
PMID:15128702 GO_REF:0000107, MGI:3046107 NCBI chr 2:120,529,716...120,570,356
Ensembl chr 2:120,512,899...120,570,355
JBrowse link
G Homer1 homer scaffold protein 1 ISO (MGI:3784629|PMID:18268005) RGD PMID:18268005 MGI:3784629 NCBI chr 2:22,909,550...23,012,303
Ensembl chr 2:22,909,569...23,009,678
JBrowse link
G Ilk integrin-linked kinase IDA RGD PMID:16170337 RGD:2302069 NCBI chr 1:170,578,941...170,585,192
Ensembl chr 1:170,578,889...170,585,189
JBrowse link
G Krt19 keratin 19 ISO (PMID:16000376) RGD PMID:16000376 NCBI chr10:88,055,843...88,060,560
Ensembl chr10:88,055,841...88,060,561
JBrowse link
G Krt8 keratin 8 IDA RGD PMID:15247274 RGD:1600063 NCBI chr 7:143,596,511...143,603,745
Ensembl chr 7:143,596,511...143,603,803
JBrowse link
G Pgm5 phosphoglucomutase 5 ISO (PMID:8175905) RGD PMID:8175905 NCBI chr 1:242,582,591...242,765,837
Ensembl chr 1:242,582,642...242,765,807
JBrowse link
G Plec plectin TAS PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
JBrowse link
G Sdc4 syndecan 4 IDA RGD PMID:12209563 RGD:729823 NCBI chr 3:160,872,503...160,891,190
Ensembl chr 3:160,872,503...160,891,190
JBrowse link
G Smpx small muscle protein, X-linked IBA
ISO
PMID:21873635
(MGI:2135482|PMID:11381084)
RGD PMID:11381084, PMID:21873635 MGI:2135482, RGD:13792537 NCBI chr  X:40,029,200...40,086,870
Ensembl chr  X:40,030,248...40,086,870
JBrowse link
G Svil supervillin ISO (PMID:12711699) RGD PMID:12711699 NCBI chr17:55,230,298...55,425,967
Ensembl chr17:55,230,298...55,346,279
JBrowse link
G Synm synemin ISO
IBA
(PMID:16777071), (PMID:18342854)
PMID:21873635
RGD PMID:16777071, PMID:18342854, PMID:21873635 RGD:13792537 NCBI chr 1:128,692,112...128,722,048
Ensembl chr 1:128,692,112...128,722,048
JBrowse link
G Trpc1 transient receptor potential cation channel, subfamily C, member 1 ISO (MGI:3784629|PMID:18268005) RGD PMID:18268005 MGI:3784629 NCBI chr 8:103,503,982...103,554,905
Ensembl chr 8:103,503,985...103,554,468
JBrowse link
G Vcl vinculin ISO
IEA
(PMID:9415431)
(MGI:3046107|PMID:15128702)
GO_REF:0000107
RGD
Ensembl
PMID:9415431, PMID:15128702 GO_REF:0000107, MGI:3046107 NCBI chr15:3,455,211...3,544,738
Ensembl chr15:3,455,211...3,544,702
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      costamere 22
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      organelle 13274
        non-membrane-bounded organelle 5194
          intracellular non-membrane-bounded organelle 5177
            contractile fiber 247
              myofibril 237
                costamere 22
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.