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ONTOLOGY REPORT - ANNOTATIONS


Term:costamere
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Accession:GO:0043034 term browser browse the term
Definition:Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
Synonyms:xref: Wikipedia:Costamere



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costamere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahnak AHNAK nucleoprotein located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:4838689|PMID:20833135)
UniProt
RGD
PMID:20833135 PMID:21873635 GO_REF:0000024 MGI:4838689, RGD:13792537 NCBI chr 1:205,882,223...205,970,934
Ensembl chr 1:205,882,273...205,970,926
JBrowse link
G Ahnak2 AHNAK nucleoprotein 2 located_in ISO (MGI:4838689|PMID:20833135) RGD PMID:20833135 MGI:4838689 NCBI chr 6:131,830,668...131,876,311 JBrowse link
G Ank2 ankyrin 2 located_in ISO (MGI:3610760|PMID:16292983) RGD PMID:16292983 MGI:3610760 NCBI chr 2:215,378,028...215,954,015
Ensembl chr 2:215,379,680...215,862,923
JBrowse link
G Ank3 ankyrin 3 located_in TAS PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
JBrowse link
G Cmya5 cardiomyopathy associated 5 located_in ISO (MGI:3639834|PMID:16407236), (MGI:3793389|PMID:18252718) RGD PMID:16407236 PMID:18252718 MGI:3639834 MGI:3793389 NCBI chr 2:24,279,520...24,378,253
Ensembl chr 2:24,279,528...24,378,364
JBrowse link
G Dag1 dystroglycan 1 IDA RGD PMID:10531619 RGD:2314896 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
JBrowse link
G Dmd dystrophin located_in ISO (PMID:16000376) RGD PMID:16000376 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207
JBrowse link
G Flnc filamin C located_in TAS PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 4:58,034,088...58,061,882
Ensembl chr 4:58,034,189...58,061,844
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3046107|PMID:15128702)
Ensembl
RGD
PMID:15128702 GO_REF:0000107 MGI:3046107 NCBI chr 2:116,884,167...116,937,586
Ensembl chr 2:116,884,248...116,937,590
JBrowse link
G Homer1 homer scaffold protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3784629|PMID:18268005)
Ensembl
RGD
PMID:18268005 GO_REF:0000107 MGI:3784629 NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
JBrowse link
G Ilk integrin-linked kinase IDA RGD PMID:16170337 RGD:2302069 NCBI chr 1:160,088,839...160,095,140
Ensembl chr 1:160,088,897...160,095,140
JBrowse link
G Krt19 keratin 19 located_in ISO (PMID:16000376) RGD PMID:16000376 NCBI chr10:85,075,835...85,080,552 JBrowse link
G Krt8 keratin 8 IDA RGD PMID:15247274 RGD:1600063 NCBI chr 7:133,124,203...133,131,656
Ensembl chr 7:133,124,203...133,131,728
JBrowse link
G Pgm5 phosphoglucomutase 5 located_in ISO (PMID:8175905) RGD PMID:8175905 NCBI chr 1:222,325,638...222,513,423
Ensembl chr 1:222,325,643...222,513,437
JBrowse link
G Plec plectin located_in TAS PMID:21223964 BHF-UCL PMID:21223964 RGD:8554309 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
G Sdc4 syndecan 4 IDA RGD PMID:12209563 RGD:729823 NCBI chr 3:153,154,888...153,173,576
Ensembl chr 3:153,154,896...153,173,580
JBrowse link
G Smpx small muscle protein, X-linked located_in
is_active_in
ISO
IBA
(MGI:2135482|PMID:11381084)
PMID:21873635
RGD PMID:11381084 PMID:21873635 MGI:2135482, RGD:13792537 NCBI chr  X:37,233,209...37,292,266
Ensembl chr  X:37,234,294...37,276,708
JBrowse link
G Svil supervillin located_in ISO (PMID:12711699) RGD PMID:12711699 NCBI chr17:52,648,502...52,844,114
Ensembl chr17:52,648,502...52,793,404
JBrowse link
G Synm synemin located_in
is_active_in
ISO
IBA
(PMID:16777071), (PMID:18342854)
PMID:21873635
RGD PMID:16777071 PMID:18342854 PMID:21873635 RGD:13792537 NCBI chr 1:121,333,712...121,363,652
Ensembl chr 1:121,333,720...121,363,652
JBrowse link
G Trpc1 transient receptor potential cation channel, subfamily C, member 1 located_in ISO (MGI:3784629|PMID:18268005) RGD PMID:18268005 MGI:3784629 NCBI chr 8:96,263,322...96,314,197
Ensembl chr 8:96,263,329...96,314,276
JBrowse link
G Vcl vinculin located_in IEA
ISO
GO_REF:0000107
(PMID:9415431)
(MGI:3046107|PMID:15128702)
Ensembl
RGD
PMID:9415431 PMID:15128702 GO_REF:0000107 MGI:3046107 NCBI chr15:3,265,776...3,355,586
Ensembl chr15:3,265,815...3,355,606
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      costamere 21
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      intracellular anatomical structure 14364
        intracellular organelle 12730
          intracellular non-membrane-bounded organelle 4906
            contractile fiber 247
              myofibril 237
                costamere 21
paths to the root