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ONTOLOGY REPORT - ANNOTATIONS

Term:camera-type eye development
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Accession:GO:0043010 term browser browse the term
Definition:The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
Synonyms:alt_id: GO:0001747;   GO:0031075
 never_in_taxon: NCBITaxon:6656 ! Arthropoda


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camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 acts_upstream_of_or_within IMP (PMID:15572692) MGI PMID:15572692 NCBI chr 1:60,444,927...60,521,104
Ensembl chr 1:60,448,778...60,520,317 		JBrowse link
G Ahr aryl-hydrocarbon receptor involved_in IMP (PMID:10973493) DFLAT PMID:10973493 NCBI chr12:35,547,978...35,584,988
Ensembl chr12:35,547,973...35,585,037 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (PMID:16368932)
(PMID:15366004)		 MGI PMID:15366004 PMID:16368932 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within IMP (PMID:11044403) MGI PMID:11044403 NCBI chr 7:16,228,398...16,349,313
Ensembl chr 7:16,227,644...16,348,918 		JBrowse link
G B3glct beta-3-glucosyltransferase acts_upstream_of_or_within IMP (PMID:31600785) MGI PMID:31600785 NCBI chr 5:149,601,565...149,686,064
Ensembl chr 5:149,601,695...149,686,064 		JBrowse link
G B9d1 B9 protein domain 1 acts_upstream_of_or_within IMP (PMID:22179047) MGI PMID:22179047 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP
IGI		 (PMID:9268572)
(PMID:14681194)		 MGI PMID:9268572 PMID:14681194 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IGI (PMID:15673568) MGI PMID:15673568 NCBI chr 3:141,540,230...141,875,335
Ensembl chr 3:141,542,897...141,875,186 		JBrowse link
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO GO_Central GO_REF:0000119 NCBI chr 6:118,564,201...119,174,345
Ensembl chr 6:118,564,201...119,173,851 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within IMP (PMID:24947469) MGI PMID:24947469 NCBI chr 5:43,819,715...43,898,317
Ensembl chr 5:43,819,688...43,898,314 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within IMP (PMID:19276117) MGI PMID:19276117 NCBI chr 7:143,012,076...143,014,735
Ensembl chr 7:143,012,076...143,014,787 		JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:100,323,410...100,409,527
Ensembl chr10:100,323,420...100,410,702 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within IMP (PMID:16207732) MGI PMID:16207732 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IGI (PMID:12546709) MGI PMID:12546709 NCBI chr17:31,896,905...31,900,704
Ensembl chr17:31,896,781...31,900,707 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within IGI (PMID:12546709) MGI PMID:12546709 NCBI chr 9:50,657,251...50,667,936
Ensembl chr 9:50,662,625...50,667,936 		JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within IMP (PMID:10585769) MGI PMID:10585769 NCBI chr11:77,609,440...77,616,119
Ensembl chr11:77,609,441...77,616,109 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:112,394,358...112,411,411
Ensembl chr 5:112,394,359...112,400,384 		JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within ISO
IMP		 (PMID:11381063) RGD
MGI		 PMID:8706714 PMID:11381063 RGD:1298813 NCBI chr 5:113,206,124...113,217,983
Ensembl chr 5:113,206,124...113,217,983 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within IMP (PMID:11773036) MGI PMID:11773036 NCBI chr 1:65,110,684...65,112,691
Ensembl chr 1:65,110,684...65,112,848 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15967433 GO_REF:0000107 RGD:2306661 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107 		JBrowse link
G Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:28,803,154...28,876,743
Ensembl chr11:28,803,204...28,876,743 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IMP (PMID:26114487) MGI PMID:26114487 NCBI chr 8:45,386,137...45,505,294
Ensembl chr 8:45,388,484...45,505,294 		JBrowse link
G Fbn1 fibrillin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:125,142,514...125,348,417
Ensembl chr 2:125,142,514...125,349,913 		JBrowse link
G Fbn2 fibrillin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:58,141,689...58,343,200
Ensembl chr18:58,141,695...58,343,559 		JBrowse link
G Fkbp8 FK506 binding protein 8 acts_upstream_of_or_within IMP (PMID:15105374) MGI PMID:15105374 NCBI chr 8:70,980,371...70,987,978
Ensembl chr 8:70,980,374...70,987,978 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within IMP (PMID:19155270)
(PMID:23591631)		 MGI PMID:19155270 PMID:23591631 NCBI chr 7:16,543,192...16,550,657
Ensembl chr 7:16,543,171...16,550,657 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IMP (PMID:10767326)
(PMID:10395790)		 MGI PMID:10395790 PMID:10767326 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:10767326) MGI PMID:10767326 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within IMP (PMID:11309658) MGI PMID:11309658 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within IMP (PMID:17619227) MGI PMID:17619227 NCBI chr 6:14,901,348...15,441,976
Ensembl chr 6:14,901,348...15,441,976 		JBrowse link
G Ftx Ftx transcript, Xist regulator, non-protein coding acts_upstream_of_or_within IMP (PMID:30237402) MGI PMID:30237402 NCBI chr  X:102,604,516...102,667,360
Ensembl chr  X:102,592,988...102,667,512 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP (PMID:17525797) MGI PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within IMP (PMID:15253273)
(PMID:11782410)		 MGI PMID:11782410 PMID:15253273 NCBI chr 3:96,820,882...96,833,367
Ensembl chr 3:96,820,882...96,833,336 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (PMID:18582859) MGI PMID:18582859 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IMP (PMID:32049342) MGI PMID:32049342 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Gpd2 glycerol phosphate dehydrogenase 2, mitochondrial acts_upstream_of_or_within IGI (PMID:21296886) MGI PMID:21296886 NCBI chr 2:57,127,690...57,260,731
Ensembl chr 2:57,127,647...57,260,731 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (PMID:21377456) MGI PMID:21377456 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in IMP (PMID:17331197) UniProt PMID:17331197 NCBI chr 4:155,042,358...155,046,829
Ensembl chr 4:155,045,380...155,046,828 		JBrowse link
G Hesx1 homeobox gene expressed in ES cells acts_upstream_of_or_within IMP (PMID:19093031) MGI PMID:19093031 NCBI chr14:26,716,322...26,724,286
Ensembl chr14:26,716,373...26,724,286 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Jag1 jagged 1 acts_upstream_of_or_within IMP (PMID:10196361) MGI PMID:10196361 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564 		JBrowse link
G Lama1 laminin, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:68,004,129...68,129,640
Ensembl chr17:68,004,254...68,129,642 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within IMP (PMID:9238094) MGI PMID:9238094 NCBI chr 7:43,079,523...43,085,420
Ensembl chr 7:43,079,512...43,085,420 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within IMP (PMID:20568247)
(PMID:10660670)		 MGI PMID:10660670 PMID:20568247 NCBI chr 2:33,450,977...33,531,219
Ensembl chr 2:33,450,977...33,530,620 		JBrowse link
G Mab21l1 mab-21-like 1 acts_upstream_of_or_within IMP (PMID:12642482) MGI PMID:12642482 NCBI chr 3:55,689,931...55,692,708
Ensembl chr 3:55,689,931...55,692,422 		JBrowse link
G Mab21l2 mab-21-like 2 acts_upstream_of_or_within IMP (PMID:15385160) MGI PMID:15385160 NCBI chr 3:86,453,357...86,455,590
Ensembl chr 3:86,452,888...86,455,590 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within IMP (PMID:12941696) MGI PMID:12941696 NCBI chr13:111,882,962...111,954,803
Ensembl chr13:111,882,962...111,945,527 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within IMP (PMID:14500757) MGI PMID:14500757 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119 		JBrowse link
G Mitf melanogenesis associated transcription factor acts_upstream_of_or_within IGI (PMID:15576400) MGI PMID:15576400 NCBI chr 6:97,783,966...97,998,321
Ensembl chr 6:97,784,013...97,998,310 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within IMP (PMID:21531335) MGI PMID:21531335 NCBI chr 1:93,228,927...93,233,601
Ensembl chr 1:93,226,933...93,233,637 		JBrowse link
G Mtnr1a melatonin receptor 1A ISO RGD PMID:12890503 RGD:9588674 NCBI chr 8:45,522,144...45,542,270
Ensembl chr 8:45,522,174...45,541,543 		JBrowse link
G Mtnr1b melatonin receptor 1B ISO RGD PMID:12890503 RGD:9588674 NCBI chr 9:15,773,910...15,785,852
Ensembl chr 9:15,735,824...15,785,852 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (PMID:19531352) MGI PMID:19531352 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Neurod1 neurogenic differentiation 1 acts_upstream_of_or_within IGI (PMID:11861467) MGI PMID:11861467 NCBI chr 2:79,282,981...79,286,980
Ensembl chr 2:79,282,865...79,287,095 		JBrowse link
G Neurod4 neurogenic differentiation 4 involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:11861467) GO_Central
MGI		 PMID:11861467 GO_REF:0000033 NCBI chr10:130,104,021...130,116,123
Ensembl chr10:130,104,021...130,116,109 		JBrowse link
G Nfix nuclear factor I/X involved_in IMP (PMID:18477394) MGI PMID:18477394 NCBI chr 8:85,431,341...85,527,086
Ensembl chr 8:85,426,505...85,526,973 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IMP (PMID:16000615)
(PMID:15371513)		 MGI PMID:15371513 PMID:16000615 NCBI chr10:42,437,959...42,459,721
Ensembl chr10:42,437,959...42,459,628 		JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within IMP (PMID:12756174) MGI PMID:12756174 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI
IMP		 (PMID:12072567)
(PMID:12756174)
(PMID:11069887)
(PMID:12183364)
(PMID:12648492), (PMID:16080917)
(PMID:11062307)		 MGI PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pcnt pericentrin (kendrin) acts_upstream_of_or_within IMP (PMID:25220058) MGI PMID:25220058 NCBI chr10:76,187,098...76,279,988
Ensembl chr10:76,187,097...76,278,620 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Pknox1 Pbx/knotted 1 homeobox acts_upstream_of_or_within IMP (PMID:16847320) MGI PMID:16847320 NCBI chr17:31,783,697...31,826,665
Ensembl chr17:31,783,708...31,826,667 		JBrowse link
G Prss56 serine protease 56 acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:21532570) MGI
GO_Central		 PMID:21532570 GO_REF:0000119 NCBI chr 1:87,111,002...87,116,127
Ensembl chr 1:87,111,035...87,116,127 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein subunit 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 1:127,796,492...127,871,612
Ensembl chr 1:127,796,510...127,871,605 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within IMP (PMID:13970081), (PMID:17247120), (PMID:640224)
(PMID:11105055), (PMID:15789424)		 MGI PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 NCBI chr18:66,067,710...66,072,160
Ensembl chr18:66,061,348...66,072,858 		JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within IMP (PMID:19474196) MGI PMID:19474196 NCBI chr 2:105,216,293...105,229,664
Ensembl chr 2:105,216,636...105,229,664 		JBrowse link
G Rpe65 retinal pigment epithelium 65 ISO RGD PMID:9512345 RGD:633787 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within IMP (PMID:17553904), (PMID:17558409) MGI PMID:17553904 PMID:17558409 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within IGI (PMID:9376317) MGI PMID:9376317 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP
IDA
IGI		 (PMID:16236765)
(PMID:12195432)
(PMID:18582859)
(PMID:12756179)		 MGI PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Shroom2 shroom family member 2 involved_in ISS (PMID:16987870) UniProt PMID:16987870 NCBI chr  X:151,392,505...151,553,784
Ensembl chr  X:151,392,505...151,552,461 		JBrowse link
G Six3 sine oculis-related homeobox 3 acts_upstream_of_or_within IGI (PMID:12072567) MGI PMID:12072567 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (PMID:11731796) MGI PMID:11731796 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Slc25a25 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 acts_upstream_of_or_within IGI (PMID:21296886) MGI PMID:21296886 NCBI chr 2:32,304,499...32,341,482
Ensembl chr 2:32,304,499...32,341,457 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IMP (PMID:23543054) MGI PMID:23543054 NCBI chr14:110,984,770...110,992,640
Ensembl chr14:110,986,012...110,992,581 		JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:57,971,076...58,061,287
Ensembl chr 9:57,971,071...58,061,279 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within IMP (PMID:14757819) MGI PMID:14757819 NCBI chr 2:152,135,745...152,155,914
Ensembl chr 2:152,135,748...152,155,916 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within IMP (PMID:22179047) MGI PMID:22179047 NCBI chr 8:112,638,639...112,660,445
Ensembl chr 8:112,638,643...112,660,513 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within IMP (PMID:21856951) MGI PMID:21856951 NCBI chr 7:97,999,875...98,010,602
Ensembl chr 7:97,999,875...98,010,535 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within IGI (PMID:14681194) MGI PMID:14681194 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221 		JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within IGI (PMID:15905411) MGI PMID:15905411 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IGI (PMID:15905411) MGI PMID:15905411 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IGI (PMID:15576400) MGI PMID:15576400 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within IMP (PMID:24302887) MGI PMID:24302887 NCBI chr11:21,521,969...21,848,686
Ensembl chr11:21,522,235...21,848,989 		JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of_or_within IMP (PMID:11889045) MGI PMID:11889045 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH like homeobox 2 acts_upstream_of_or_within IDA (PMID:14998930) MGI PMID:14998930 NCBI chr 5:106,600,389...106,606,032
Ensembl chr 5:106,600,389...106,606,032 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within IMP (PMID:17092954) MGI PMID:17092954 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within
involved_in		 IMP (PMID:15363391) MGI
UniProt		 PMID:15363391 NCBI chr 5:114,392,225...114,412,486
Ensembl chr 5:114,392,225...114,411,868 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of IDA (PMID:15976303) MGI PMID:15976303 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of IMP (PMID:16038893) MGI PMID:16038893 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IDA (PMID:25654255) MGI PMID:25654255 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Miat myocardial infarction associated transcript (non-protein coding) acts_upstream_of_or_within IMP (PMID:20459797) MGI PMID:20459797 NCBI chr 5:112,361,094...112,376,814
Ensembl chr 5:112,361,094...112,377,261 		JBrowse link
G Neurod1 neurogenic differentiation 1 involved_in IDA (PMID:11861467) UniProt PMID:11861467 NCBI chr 2:79,282,981...79,286,980
Ensembl chr 2:79,282,865...79,287,095 		JBrowse link
G Neurod4 neurogenic differentiation 4 involved_in IDA (PMID:11861467) UniProt PMID:11861467 NCBI chr10:130,104,021...130,116,123
Ensembl chr10:130,104,021...130,116,109 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a acts_upstream_of_or_within
involved_in		 IMP (PMID:17301087)
(PMID:17075007)		 MGI
UniProt		 PMID:17075007 PMID:17301087 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (PMID:23652001) UniProt PMID:23652001 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of IDA (PMID:18973577) MGI PMID:18973577 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of IDA (PMID:18926818) MGI PMID:18926818 NCBI chr 2:156,681,737...156,697,490
Ensembl chr 2:156,681,927...156,697,490 		JBrowse link
avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsdma3 gasdermin A3 acts_upstream_of_or_within IMP (PMID:9617549) MGI PMID:9617549 NCBI chr11:98,517,175...98,529,627
Ensembl chr11:98,517,186...98,529,052 		JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IMP (PMID:27687499) MGI PMID:27687499 NCBI chr 6:92,749,680...92,921,431
Ensembl chr 6:92,749,680...92,920,473 		JBrowse link
G Aqp1 aquaporin 1 acts_upstream_of_or_within IMP (PMID:11891232) MGI PMID:11891232 NCBI chr 6:55,313,284...55,325,540
Ensembl chr 6:55,313,417...55,325,540 		JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within IMP (PMID:11891232) MGI PMID:11891232 NCBI chr15:99,488,909...99,492,710
Ensembl chr15:99,488,663...99,492,710 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:9268572) MGI PMID:9268572 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IMP (PMID:16154126)
(PMID:16854970)		 MGI PMID:16154126 PMID:16854970 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Col8a1 collagen, type VIII, alpha 1 acts_upstream_of_or_within IGI (PMID:16051690) MGI PMID:16051690 NCBI chr16:57,444,619...57,575,100
Ensembl chr16:57,444,621...57,575,100 		JBrowse link
G Col8a2 collagen, type VIII, alpha 2 acts_upstream_of_or_within IGI (PMID:16051690) MGI PMID:16051690 NCBI chr 4:126,180,613...126,208,123
Ensembl chr 4:126,180,586...126,208,123 		JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within IMP (PMID:12971893) MGI PMID:12971893 NCBI chr 9:101,799,327...102,231,892
Ensembl chr 9:101,799,327...102,231,892 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within IMP (PMID:12971893) MGI PMID:12971893 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IMP (PMID:26114487) MGI PMID:26114487 NCBI chr 8:45,386,137...45,505,294
Ensembl chr 8:45,388,484...45,505,294 		JBrowse link
G Ftx Ftx transcript, Xist regulator, non-protein coding acts_upstream_of_or_within IMP (PMID:30237402) MGI PMID:30237402 NCBI chr  X:102,604,516...102,667,360
Ensembl chr  X:102,592,988...102,667,512 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IMP (PMID:15976303) MGI PMID:15976303 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:8387379) MGI PMID:8387379 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:124,716,146...124,718,032
Ensembl chr 6:124,716,146...124,718,337 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IGI (PMID:22627278) MGI PMID:22627278 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP (PMID:19000668) UniProt PMID:19000668 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within IMP (PMID:16104381) MGI PMID:16104381 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr 9:43,655,251...43,718,758
Ensembl chr 9:43,655,281...43,743,955 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within IMP (PMID:7926784) MGI PMID:7926784 NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within IGI (PMID:16624538) MGI PMID:16624538 NCBI chr17:34,239,766...34,243,654
Ensembl chr17:34,239,766...34,243,654 		JBrowse link
G Scrib scribbled planar cell polarity involved_in TAS (PMID:26114487) MGI PMID:26114487 NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633 		JBrowse link
G Shroom2 shroom family member 2 involved_in ISS (PMID:16987870) UniProt PMID:16987870 NCBI chr  X:151,392,505...151,553,784
Ensembl chr  X:151,392,505...151,552,461 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (PMID:17003410) MGI PMID:17003410 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Sox12 SRY (sex determining region Y)-box 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:152,235,531...152,239,966
Ensembl chr 2:152,235,531...152,239,983 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 8:48,678,700...51,370,255
Ensembl chr 8:48,680,717...49,296,986 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (PMID:16251428) MGI PMID:16251428 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IGI
IMP		 (PMID:22627278) MGI PMID:22627278 NCBI chr 6:113,600,955...113,608,595
Ensembl chr 6:113,600,920...113,608,594 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within IGI (PMID:16624538) MGI PMID:16624538 NCBI chr12:108,758,841...108,786,074
Ensembl chr12:108,758,899...108,786,074 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS UniProt GO_REF:0000024 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
IMP		 (PMID:19228982) GO_Central
UniProt		 PMID:19228982 GO_REF:0000033 GO_REF:0000119 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in IDA (PMID:26287463) UniProt PMID:26287463 NCBI chr11:113,667,200...113,957,855
Ensembl chr11:113,667,200...113,957,872 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (PMID:12808454) MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IMP (PMID:21646512) MGI PMID:21646512 NCBI chr12:98,886,796...98,949,509
Ensembl chr12:98,886,833...98,949,497 		JBrowse link
G Vax2os ventral anterior homeobox 2, opposite strand acts_upstream_of_or_within IMP (PMID:22128341) MGI PMID:22128341 NCBI chr 6:83,669,786...83,689,183
Ensembl chr 6:83,669,786...83,689,190 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (PMID:17064680) UniProt PMID:17064680 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Jag1 jagged 1 acts_upstream_of_or_within IMP (PMID:23676271) MGI PMID:23676271 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564 		JBrowse link
G Notch2 notch 2 acts_upstream_of_or_within IMP (PMID:23676271) MGI PMID:23676271 NCBI chr 3:97,920,854...98,057,683
Ensembl chr 3:97,920,843...98,057,677 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within IMP (PMID:21856951) MGI PMID:21856951 NCBI chr 7:97,999,875...98,010,602
Ensembl chr 7:97,999,875...98,010,535 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IMP (PMID:22627278) MGI PMID:22627278 NCBI chr 6:113,600,955...113,608,595
Ensembl chr 6:113,600,920...113,608,594 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in IMP (PMID:17609112) UniProt PMID:17609112 NCBI chr 4:132,083,233...132,149,765
Ensembl chr 4:132,083,234...132,149,800 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (PMID:18423449) UniProt PMID:18423449 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36125046) MGI PMID:36125046 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IMP (PMID:29518352)
(PMID:23580486)		 MGI PMID:23580486 PMID:29518352 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:26607664) MGI PMID:26607664 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IMP (PMID:27687499) MGI PMID:27687499 NCBI chr 6:92,749,680...92,921,431
Ensembl chr 6:92,749,680...92,920,473 		JBrowse link
G Foxe3 forkhead box E3 involved_in IMP (PMID:17064680) UniProt PMID:17064680 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Kera keratocan acts_upstream_of_or_within IMP (PMID:10802664) MGI PMID:10802664 NCBI chr10:97,442,873...97,449,555
Ensembl chr10:97,442,741...97,449,554 		JBrowse link
G Krt12 keratin 12 acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:8977471)
(PMID:26758872)		 MGI
GO_Central
UniProt		 PMID:8977471 PMID:26758872 GO_REF:0000119 NCBI chr11:99,306,490...99,313,419
Ensembl chr11:99,306,492...99,313,085 		JBrowse link
G Limk2 LIM domain kinase 2 acts_upstream_of_or_within IMP (PMID:26234751) MGI PMID:26234751 NCBI chr11:3,293,297...3,359,238
Ensembl chr11:3,294,256...3,359,189 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:29450535) MGI PMID:29450535 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (PMID:18423449) UniProt PMID:18423449 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:16186342) MGI PMID:16186342 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 acts_upstream_of_or_within IMP (PMID:20574024) MGI PMID:20574024 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IGI (PMID:17184764) MGI PMID:17184764 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within
involved_in		 IGI
IMP		 (PMID:17184764)
(PMID:14623956)		 MGI
UniProt		 PMID:14623956 PMID:17184764 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within IMP (PMID:28817564) MGI PMID:28817564 NCBI chr13:64,580,133...64,587,536
Ensembl chr13:64,580,128...64,589,587 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (PMID:15958512) MGI PMID:15958512 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within IMP (PMID:18791178) MGI PMID:18791178 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Nes nestin involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:87,878,400...87,887,758
Ensembl chr 3:87,878,385...87,887,758 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (PMID:10498698)
(PMID:10572050)		 MGI PMID:10498698 PMID:10572050 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within IMP (PMID:15661756) MGI PMID:15661756 NCBI chr 7:19,093,639...19,112,465
Ensembl chr 7:19,093,674...19,112,458 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IGI (PMID:7607067) MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (PMID:7607067) MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within IMP (PMID:21945076) MGI PMID:21945076 NCBI chr 1:91,422,311...91,457,029
Ensembl chr 1:91,422,369...91,457,029 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IMP (PMID:19286674) MGI PMID:19286674 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (PMID:22228095) MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:57,971,076...58,061,287
Ensembl chr 9:57,971,071...58,061,279 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IMP (PMID:10049573) MGI PMID:10049573 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IGI (PMID:18653562) MGI PMID:18653562 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (PMID:18056999) MGI PMID:18056999 NCBI chr17:31,896,905...31,900,704
Ensembl chr17:31,896,781...31,900,707 		JBrowse link
G Foxf2 forkhead box F2 involved_in IMP (PMID:22022403) BHF-UCL PMID:22022403 NCBI chr13:31,809,686...31,815,390
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IMP (PMID:18832390) CACAO PMID:18832390 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within IMP (PMID:28778798) MGI PMID:28778798 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IMP (PMID:28778798) MGI PMID:28778798 NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Kdm2b lysine (K)-specific demethylase 2B involved_in IMP (PMID:21220025) BHF-UCL PMID:21220025 NCBI chr 5:123,008,727...123,127,333
Ensembl chr 5:123,008,728...123,127,886 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:19653321)
(PMID:18985738)		 MGI PMID:18985738 PMID:19653321 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IGI (PMID:18653562) MGI PMID:18653562 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Sp1 trans-acting transcription factor 1 acts_upstream_of_or_within IGI (PMID:17584888) MGI PMID:17584888 NCBI chr15:102,314,751...102,344,839
Ensembl chr15:102,314,578...102,344,839 		JBrowse link
G Sp3 trans-acting transcription factor 3 acts_upstream_of_or_within IGI (PMID:17584888) MGI PMID:17584888 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G Tbx2 T-box 2 involved_in IMP (PMID:15459098) BHF-UCL PMID:15459098 NCBI chr11:85,723,441...85,732,774
Ensembl chr11:85,723,377...85,732,774 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:9811866) MGI PMID:9811866 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Th tyrosine hydroxylase involved_in IMP (PMID:16445854) BHF-UCL PMID:16445854 NCBI chr 7:142,446,516...142,453,732
Ensembl chr 7:142,446,489...142,484,865 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (PMID:18436818) MGI PMID:18436818 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP (PMID:19754878) MGI PMID:19754878 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP (PMID:18094249) UniProt PMID:18094249 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:19653321) MGI PMID:19653321 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IEP (PMID:12692551) BHF-UCL PMID:12692551 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
G Rbp4 retinol binding protein 4, plasma involved_in IMP (PMID:10469643) BHF-UCL PMID:10469643 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in IMP (PMID:26114487) MGI PMID:26114487 NCBI chr 8:45,386,137...45,505,294
Ensembl chr 8:45,388,484...45,505,294 		JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium channel, voltage-dependent, L type, alpha 1S subunit acts_upstream_of_or_within IMP (PMID:14618389) MGI PMID:14618389 NCBI chr 1:135,980,549...136,047,268
Ensembl chr 1:135,980,488...136,047,560 		JBrowse link
G Foxl2 forkhead box L2 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:98,837,495...98,840,601
Ensembl chr 9:98,837,341...98,840,596 		JBrowse link
G Myh15 myosin, heavy chain 15 ISO RGD PMID:19948655 RGD:2317122 NCBI chr16:48,877,763...49,019,926
Ensembl chr16:48,877,849...49,019,467 		JBrowse link
G Myom1 myomesin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:12878677 GO_REF:0000107 RGD:633368 NCBI chr17:71,326,455...71,433,851
Ensembl chr17:71,309,628...71,433,851 		JBrowse link
G Myom2 myomesin 2 ISO RGD PMID:12878677 RGD:633368 NCBI chr 8:15,107,653...15,183,410
Ensembl chr 8:15,107,653...15,183,541 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (PMID:16638982)
(PMID:21035439)		 MGI PMID:16638982 PMID:21035439 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within IGI (PMID:9030684) MGI PMID:9030684 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within IMP (PMID:21262862) MGI PMID:21262862 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in IGI (PMID:21093383) BHF-UCL PMID:21093383 NCBI chr 4:129,409,897...129,436,516
Ensembl chr 4:129,409,897...129,436,506 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in IGI (PMID:21093383) BHF-UCL PMID:21093383 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885 		JBrowse link
G Inhba inhibin beta-A involved_in IGI (PMID:14551263) UniProt PMID:14551263 NCBI chr13:16,178,841...16,206,194
Ensembl chr13:16,186,436...16,206,206 		JBrowse link
G Jun jun proto-oncogene acts_upstream_of_or_within IMP (PMID:25224220) MGI PMID:25224220 NCBI chr 4:94,937,273...94,940,459
Ensembl chr 4:94,937,271...94,940,459 		JBrowse link
G Kmt2c lysine (K)-specific methyltransferase 2C acts_upstream_of_or_within IMP (PMID:17021013) MGI PMID:17021013 NCBI chr 5:25,476,793...25,703,853
Ensembl chr 5:25,476,796...25,703,781 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within IMP (PMID:23201579), (PMID:25224220) MGI PMID:23201579 PMID:25224220 NCBI chr13:111,882,962...111,954,803
Ensembl chr13:111,882,962...111,945,527 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IMP (PMID:19389375) UniProt PMID:19389375 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:29450535) MGI PMID:29450535 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within IGI (PMID:9030684) MGI PMID:9030684 NCBI chr17:80,701,181...80,787,882
Ensembl chr17:80,701,180...80,787,882 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (PMID:15254231) UniProt PMID:15254231 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (PMID:20047077) MGI PMID:20047077 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101 		JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:57,971,076...58,061,287
Ensembl chr 9:57,971,071...58,061,279 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in IMP (PMID:9811866) UniProt PMID:9811866 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in IMP (PMID:30936473) UniProt PMID:30936473 NCBI chr 9:49,251,703...49,319,468
Ensembl chr 9:49,251,927...49,319,477 		JBrowse link
G Flt1 FMS-like tyrosine kinase 1 involved_in IMP (PMID:30936473) UniProt PMID:30936473 NCBI chr 5:147,498,414...147,663,419
Ensembl chr 5:147,498,414...147,662,821 		JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within IMP (PMID:19557008) MGI PMID:19557008 NCBI chr13:49,341,005...49,349,727
Ensembl chr13:49,340,961...49,349,720 		JBrowse link
G Opn4 opsin 4 (melanopsin) involved_in IMP (PMID:30936473) UniProt PMID:30936473 NCBI chr14:34,312,575...34,322,099
Ensembl chr14:34,312,575...34,322,099 		JBrowse link
G Opn5 opsin 5 involved_in IMP (PMID:30936473) UniProt PMID:30936473 NCBI chr17:42,867,670...42,922,321
Ensembl chr17:42,867,674...42,922,286 		JBrowse link
G Slc17a6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 involved_in IMP (PMID:30936473) UniProt PMID:30936473 NCBI chr 7:51,271,578...51,320,874
Ensembl chr 7:51,271,754...51,320,867 		JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 involved_in IDA (PMID:30936473) UniProt PMID:30936473 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791 		JBrowse link
G Th tyrosine hydroxylase involved_in IMP (PMID:30936473) UniProt PMID:30936473 NCBI chr 7:142,446,516...142,453,732
Ensembl chr 7:142,446,489...142,484,865 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (PMID:17064680) UniProt PMID:17064680 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IGI (PMID:22627278) MGI PMID:22627278 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IMP
IGI		 (PMID:22627278) MGI PMID:22627278 NCBI chr 6:113,600,955...113,608,595
Ensembl chr 6:113,600,920...113,608,594 		JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within IMP (PMID:27687499) MGI PMID:27687499 NCBI chr 6:92,749,680...92,921,431
Ensembl chr 6:92,749,680...92,920,473 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 acts_upstream_of_or_within IMP (PMID:26218911) MGI PMID:26218911 NCBI chr 2:180,570,402...180,575,803
Ensembl chr 2:180,570,816...180,575,803 		JBrowse link
G Casp6 caspase 6 ISO RGD PMID:15161922 RGD:2301319 NCBI chr 3:129,695,064...129,707,761
Ensembl chr 3:129,695,074...129,707,752 		JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO RGD PMID:10620399 RGD:724665 NCBI chr10:128,533,807...128,540,920
Ensembl chr10:128,533,808...128,540,900 		JBrowse link
G Cdk4 cyclin dependent kinase 4 ISO RGD PMID:10620399 RGD:724665 NCBI chr10:126,899,404...126,903,157
Ensembl chr10:126,899,403...126,903,789 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes acts_upstream_of_or_within IMP (PMID:19754878) MGI PMID:19754878 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Cryaa crystallin, alpha A involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP
IGI		 (PMID:16439475), (PMID:9023351)
(PMID:11687536)		 RGD
GO_Central
MGI		 PMID:8187157 PMID:9023351 PMID:11687536 PMID:16439475 GO_REF:0000033 RGD:1600991 NCBI chr17:31,896,905...31,900,704
Ensembl chr17:31,896,781...31,900,707 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within IGI (PMID:16439475) MGI PMID:16439475 NCBI chr 9:50,657,251...50,667,936
Ensembl chr 9:50,662,625...50,667,936 		JBrowse link
G Cryba1 crystallin, beta A1 involved_in ISO
IBA		 RGD
GO_Central		 PMID:2753045 GO_REF:0000033 RGD:1298814 NCBI chr11:77,609,440...77,616,119
Ensembl chr11:77,609,441...77,616,109 		JBrowse link
G Cryba2 crystallin, beta A2 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:21212184) MGI
GO_Central		 PMID:21212184 GO_REF:0000033 NCBI chr 1:74,929,093...74,938,001
Ensembl chr 1:74,929,093...74,932,302 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:112,394,358...112,411,411
Ensembl chr 5:112,394,359...112,400,384 		JBrowse link
G Crybb1 crystallin, beta B1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:112,403,686...112,417,451
Ensembl chr 5:112,403,681...112,417,451 		JBrowse link
G Crybb2 crystallin, beta B2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:113,206,124...113,217,983
Ensembl chr 5:113,206,124...113,217,983 		JBrowse link
G Crybb3 crystallin, beta B3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:113,223,705...113,230,102
Ensembl chr 5:113,223,705...113,229,450 		JBrowse link
G Crybg3 beta-gamma crystallin domain containing 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:59,312,451...59,421,410
Ensembl chr16:59,311,138...59,421,342 		JBrowse link
G Cryga crystallin, gamma A involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:6510713), (PMID:6877261)
(PMID:7088001), (PMID:8034315)		 RGD
GO_Central
MGI		 PMID:2338125 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 GO_REF:0000033 RGD:2303725 NCBI chr 1:65,139,552...65,142,532
Ensembl chr 1:65,139,548...65,142,532 		JBrowse link
G Crygb crystallin, gamma B involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:18172107)
(PMID:12426373), (PMID:8626090)		 RGD
GO_Central
MGI		 PMID:2338125 PMID:8626090 PMID:12426373 PMID:18172107 GO_REF:0000033 RGD:2303725 NCBI chr 1:65,119,381...65,121,449
Ensembl chr 1:65,119,378...65,121,447 		JBrowse link
G Crygc crystallin, gamma C involved_in ISO
IBA		 RGD
GO_Central		 PMID:2338125 GO_REF:0000033 RGD:2303725 NCBI chr 1:65,110,684...65,112,691
Ensembl chr 1:65,110,684...65,112,848 		JBrowse link
G Crygd crystallin, gamma D involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:10704279)
(PMID:17652744)		 RGD
GO_Central
MGI		 PMID:2338125 PMID:10704279 PMID:17652744 GO_REF:0000033 RGD:2303725 NCBI chr 1:65,101,001...65,102,598
Ensembl chr 1:65,101,031...65,102,611 		JBrowse link
G Cryge crystallin, gamma E acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:8034315) MGI
GO_Central		 PMID:8034315 GO_REF:0000033 NCBI chr 1:65,087,716...65,090,783
Ensembl chr 1:65,087,713...65,090,308 		JBrowse link
G Crygf crystallin, gamma F involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:65,965,681...65,967,470
Ensembl chr 1:65,965,679...65,967,466 		JBrowse link
G Crygn crystallin, gamma N involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:24,956,000...24,962,846
Ensembl chr 5:24,956,001...24,963,006 		JBrowse link
G Crygs crystallin, gamma S acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:6877261), (PMID:8034315) MGI
GO_Central		 PMID:6877261 PMID:8034315 GO_REF:0000033 NCBI chr16:22,623,953...22,630,160
Ensembl chr16:22,623,953...22,630,327 		JBrowse link
G Ctns cystinosis, nephropathic acts_upstream_of_or_within IMP (PMID:21897743) MGI PMID:21897743 NCBI chr11:73,073,959...73,089,869
Ensembl chr11:73,074,422...73,089,868 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within IMP (PMID:14645510) MGI PMID:14645510 NCBI chr16:31,482,261...31,692,174
Ensembl chr16:31,482,261...31,693,947 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IMP (PMID:26114487) MGI PMID:26114487 NCBI chr 8:45,386,137...45,505,294
Ensembl chr 8:45,388,484...45,505,294 		JBrowse link
G Foxe3 forkhead box E3 involved_in IMP
ISS
ISO		 (PMID:17064680) UniProt
GO_Central		 PMID:17064680 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (PMID:23136392) MGI PMID:23136392 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (PMID:19623612) MGI PMID:19623612 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within IMP (PMID:9620080) MGI PMID:9620080 NCBI chr10:56,253,297...56,266,519
Ensembl chr10:56,253,426...56,278,609 		JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within IMP (PMID:6877261) MGI PMID:6877261 NCBI chr 3:96,820,882...96,833,367
Ensembl chr 3:96,820,882...96,833,336 		JBrowse link
G Gje1 gap junction protein, epsilon 1 acts_upstream_of_or_within IMP (PMID:18385072) MGI PMID:18385072 NCBI chr10:14,591,365...14,593,958
Ensembl chr10:14,591,367...14,593,958 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within IMP (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8812411) MGI PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 NCBI chr 7:43,079,523...43,085,420
Ensembl chr 7:43,079,512...43,085,420 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within IMP (PMID:10603348)
(PMID:10383433)
(PMID:12835653)		 MGI PMID:10383433 PMID:10603348 PMID:12835653 NCBI chr 8:116,429,992...116,433,633
Ensembl chr 8:116,409,681...116,434,533 		JBrowse link
G Med1 mediator complex subunit 1 involved_in IMP (PMID:11724781) BHF-UCL PMID:11724781 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119 		JBrowse link
G Mip major intrinsic protein of lens fiber acts_upstream_of_or_within IMP (PMID:7333462) MGI PMID:7333462 NCBI chr10:128,061,679...128,067,681
Ensembl chr10:128,061,707...128,067,681 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP
IDA		 (PMID:15716406) MGI PMID:15716406 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nhs NHS actin remodeling regulator involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:8282045) GO_Central
MGI		 PMID:8282045 GO_REF:0000033 NCBI chr  X:160,616,286...160,942,437
Ensembl chr  X:160,616,292...160,942,726 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IMP (PMID:6877261) MGI PMID:6877261 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within IMP (PMID:19412548) MGI PMID:19412548 NCBI chr 5:65,763,062...65,855,579
Ensembl chr 5:65,763,064...65,855,616 		JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within IMP (PMID:19412548) MGI PMID:19412548 NCBI chr 5:150,597,178...150,734,174
Ensembl chr 5:150,597,204...150,734,155 		JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 involved_in IMP (PMID:19007884), (PMID:19334279) UniProt PMID:19007884 PMID:19334279 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:8812486) BHF-UCL PMID:8812486 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
G Pygo2 pygopus 2 acts_upstream_of_or_within IMP (PMID:17425782) MGI PMID:17425782 NCBI chr 3:89,337,521...89,342,438
Ensembl chr 3:89,337,521...89,342,435 		JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IDA (PMID:11139622) UniProt PMID:11139622 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
G Six5 sine oculis-related homeobox 5 acts_upstream_of_or_within IMP (PMID:10802668)
(PMID:10802667)		 MGI PMID:10802667 PMID:10802668 NCBI chr 7:18,828,469...18,832,474
Ensembl chr 7:18,828,519...18,832,474 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within IMP (PMID:23543054) MGI PMID:23543054 NCBI chr14:110,984,770...110,992,640
Ensembl chr14:110,986,012...110,992,581 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within IMP (PMID:24239381) MGI PMID:24239381 NCBI chr 2:152,135,745...152,155,914
Ensembl chr 2:152,135,748...152,155,916 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (PMID:11641223) MGI PMID:11641223 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:11641223) MGI PMID:11641223 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Unc45b unc-45 myosin chaperone B involved_in ISS UniProt GO_REF:0000024 NCBI chr11:82,802,112...82,834,284
Ensembl chr11:82,801,376...82,834,229 		JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1, in lens-CP94 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:15037121) MGI
GO_Central		 PMID:15037121 GO_REF:0000033 NCBI chr 2:143,668,448...143,757,320
Ensembl chr 2:143,668,448...143,705,093 		JBrowse link
G Bfsp2 beaded filament structural protein 2, phakinin acts_upstream_of_or_within IMP (PMID:15037121), (PMID:17065509) MGI PMID:15037121 PMID:17065509 NCBI chr 9:103,302,123...103,357,608
Ensembl chr 9:103,302,123...103,357,619 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within IMP (PMID:18172107) MGI PMID:18172107 NCBI chr 1:65,119,381...65,121,449
Ensembl chr 1:65,119,378...65,121,447 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IGI
IMP		 (PMID:18455718)
(PMID:23136392)		 MGI PMID:18455718 PMID:23136392 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within IGI (PMID:18455718) MGI PMID:18455718 NCBI chr 5:33,879,068...33,894,412
Ensembl chr 5:33,879,018...33,894,412 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IGI
IMP		 (PMID:23136392) MGI PMID:23136392 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IMP (PMID:21118511) MGI PMID:21118511 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Tmod1 tropomodulin 1 involved_in IGI (PMID:23144950) CACAO PMID:23144950 NCBI chr 4:46,038,940...46,116,032
Ensembl chr 4:46,038,935...46,116,032 		JBrowse link
G Vim vimentin acts_upstream_of_or_within IDA (PMID:15037121) MGI PMID:15037121 NCBI chr 2:13,579,122...13,587,637
Ensembl chr 2:13,578,738...13,587,637 		JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:17652744) RGD
GO_Central
MGI		 PMID:8575616 PMID:17652744 GO_REF:0000096 RGD:1601018 NCBI chr 1:65,101,001...65,102,598
Ensembl chr 1:65,101,031...65,102,611 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within IMP (PMID:17215516) MGI PMID:17215516 NCBI chr10:81,202,713...81,214,204
Ensembl chr10:81,202,056...81,214,350 		JBrowse link
G Hsf4 heat shock transcription factor 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:105,996,392...106,002,477
Ensembl chr 8:105,996,433...106,002,477 		JBrowse link
G Kdm5b lysine demethylase 5B involved_in ISO
IEA		 RGD
Ensembl		 PMID:24142921 GO_REF:0000107 RGD:9587771 NCBI chr 1:134,487,916...134,560,621
Ensembl chr 1:134,487,909...134,563,023 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:10383433)
(PMID:12835653)		 MGI
GO_Central		 PMID:10383433 PMID:12835653 GO_REF:0000033 NCBI chr 8:116,429,992...116,433,633
Ensembl chr 8:116,409,681...116,434,533 		JBrowse link
G Nf2 neurofibromin 2 involved_in IMP (PMID:20181838) UniProt PMID:20181838 NCBI chr11:4,715,845...4,799,544
Ensembl chr11:4,715,845...4,799,536 		JBrowse link
G Ntrk3 neurotrophic tyrosine kinase, receptor, type 3 acts_upstream_of_or_within IGI (PMID:23136392) MGI PMID:23136392 NCBI chr 7:77,825,711...78,228,865
Ensembl chr 7:77,825,707...78,387,760 		JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 involved_in IMP (PMID:19007884) UniProt PMID:19007884 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765 		JBrowse link
G Plaat1 phospholipase A and acyltransferase 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:29,027,883...29,049,283
Ensembl chr16:29,028,447...29,049,283 		JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 involved_in IMP (PMID:33854238) UniProt PMID:33854238 NCBI chr19:7,534,824...7,565,914
Ensembl chr19:7,534,824...7,565,910 		JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IDA (PMID:12072567) UniProt PMID:12072567 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
G Skil SKI-like acts_upstream_of_or_within IDA (PMID:17215516) MGI PMID:17215516 NCBI chr 3:31,149,259...31,176,741
Ensembl chr 3:31,149,207...31,176,726 		JBrowse link
G Slc7a11 solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 involved_in ISO
IEA		 RGD
Ensembl		 PMID:16043861 GO_REF:0000107 RGD:2315033 NCBI chr 3:50,319,385...50,403,947
Ensembl chr 3:49,846,975...50,398,063 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IMP (PMID:17215516) MGI PMID:17215516 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO
IBA
IMP		 (PMID:21436445) GO_Central
UniProt		 PMID:21436445 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:45,965,335...46,034,766
Ensembl chr 4:45,965,334...46,034,761 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (PMID:17215516) MGI PMID:17215516 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in IMP (PMID:15572692) UniProt PMID:15572692 NCBI chr 1:60,444,927...60,521,104
Ensembl chr 1:60,448,778...60,520,317 		JBrowse link
G Atf4 activating transcription factor 4 involved_in IMP (PMID:10096021), (PMID:10885750), (PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 NCBI chr15:80,139,385...80,141,746
Ensembl chr15:80,139,385...80,141,742 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (PMID:18056999)
(PMID:16799046)		 MGI PMID:16799046 PMID:18056999 NCBI chr17:31,896,905...31,900,704
Ensembl chr17:31,896,781...31,900,707 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within IMP (PMID:12426373), (PMID:8626090) MGI PMID:8626090 PMID:12426373 NCBI chr 1:65,119,381...65,121,449
Ensembl chr 1:65,119,378...65,121,447 		JBrowse link
G Epha2 Eph receptor A2 involved_in IDA (PMID:18948590) UniProt PMID:18948590 NCBI chr 4:141,028,532...141,056,695
Ensembl chr 4:141,028,551...141,056,695 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IMP (PMID:10080188) BHF-UCL PMID:10080188 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within IMP (PMID:24239381) MGI PMID:24239381 NCBI chr 2:152,135,745...152,155,914
Ensembl chr 2:152,135,748...152,155,916 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:9851982) MGI PMID:9851982 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Pou2f1 POU domain, class 2, transcription factor 1 acts_upstream_of_or_within IGI (PMID:17140559) MGI PMID:17140559 NCBI chr 1:165,692,719...165,830,318
Ensembl chr 1:165,692,723...165,830,247 		JBrowse link
G Six3 sine oculis-related homeobox 3 acts_upstream_of_or_within IMP (PMID:17066077) MGI PMID:17066077 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of_or_within IGI (PMID:17140559) MGI PMID:17140559 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:10571739) MGI PMID:10571739 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 breast cancer anti-estrogen resistance 3 acts_upstream_of_or_within IMP (PMID:19365570) MGI PMID:19365570 NCBI chr 3:122,213,406...122,323,840
Ensembl chr 3:122,087,785...122,323,840 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (PMID:18653562) MGI PMID:18653562 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IMP (PMID:8812430)
(PMID:16799046)		 MGI PMID:8812430 PMID:16799046 NCBI chr17:31,896,905...31,900,704
Ensembl chr17:31,896,781...31,900,707 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:16102745) MGI PMID:16102745 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within IMP (PMID:11290300) MGI PMID:11290300 NCBI chr 5:33,879,068...33,894,412
Ensembl chr 5:33,879,018...33,894,412 		JBrowse link
G Lctl lactase-like involved_in IMP (PMID:29425878) UniProt PMID:29425878 NCBI chr 9:64,024,399...64,045,400
Ensembl chr 9:64,024,429...64,045,400 		JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within IMP (PMID:14713950) MGI PMID:14713950 NCBI chr11:18,830,428...18,968,992
Ensembl chr11:18,829,817...18,968,985 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr 9:43,655,251...43,718,758
Ensembl chr 9:43,655,281...43,743,955 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr16:46,208,028...46,318,898
Ensembl chr16:46,208,069...46,318,888 		JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 involved_in IMP (PMID:19334279) UniProt PMID:19334279 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IMP (PMID:10080188) BHF-UCL PMID:10080188 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
G Shroom2 shroom family member 2 involved_in ISS (PMID:16987870) UniProt PMID:16987870 NCBI chr  X:151,392,505...151,553,784
Ensembl chr  X:151,392,505...151,552,461 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (PMID:17003410) MGI PMID:17003410 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 acts_upstream_of_or_within IMP (PMID:9512512) MGI PMID:9512512 NCBI chr 8:12,445,519...12,449,555
Ensembl chr 8:12,445,295...12,450,126 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (PMID:18423449) UniProt PMID:18423449 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IMP
IBA
ISO		 (PMID:21436445) UniProt
GO_Central		 PMID:21436445 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:45,965,335...46,034,766
Ensembl chr 4:45,965,334...46,034,761 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:18224708), (PMID:9918694) MGI PMID:9918694 PMID:18224708 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IMP (PMID:15569927) MGI PMID:15569927 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IEP (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IDA (PMID:15976303) MGI PMID:15976303 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IMP (PMID:16038893) MGI PMID:16038893 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 involved_in IMP (PMID:21875655) UniProt PMID:21875655 NCBI chr 8:79,159,638...79,163,276
Ensembl chr 8:79,159,639...79,163,274 		JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in IMP (PMID:10652278), (PMID:10890982), (PMID:16199865) UniProt PMID:10652278 PMID:10890982 PMID:16199865 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Spred1 sprouty protein with EVH-1 domain 1, related sequence involved_in IDA (PMID:29501879) UniProt PMID:29501879 NCBI chr 2:116,951,576...117,012,760
Ensembl chr 2:116,951,855...117,012,760 		JBrowse link
G Spred2 sprouty-related EVH1 domain containing 2 involved_in IDA (PMID:29501879) UniProt PMID:29501879 NCBI chr11:19,874,442...19,974,026
Ensembl chr11:19,874,375...19,974,026 		JBrowse link
G Spred3 sprouty-related EVH1 domain containing 3 involved_in IDA (PMID:29501879) UniProt PMID:29501879 NCBI chr 7:28,857,208...28,869,286
Ensembl chr 7:28,858,254...28,869,836 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in IDA (PMID:29501879) UniProt PMID:29501879 NCBI chr 3:37,694,096...37,698,748
Ensembl chr 3:37,694,096...37,698,747 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in IDA (PMID:29501879) UniProt PMID:29501879 NCBI chr14:106,129,381...106,134,559
Ensembl chr14:106,129,381...106,134,253 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IMP (PMID:25654255) MGI PMID:25654255 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin-like 7 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:148,579,737...148,584,919
Ensembl chr 4:148,579,640...148,584,917 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:32,762,695...32,781,122
Ensembl chr 3:32,760,447...32,781,122 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within IMP
ISO		 (PMID:21441919) MGI PMID:21441919 GO_REF:0000008 NCBI chr10:62,935,564...62,937,059
Ensembl chr10:62,935,430...62,937,058 		JBrowse link
G Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chr10:98,750,243...98,862,005
Ensembl chr10:98,750,268...98,862,005 		JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Atp2b3 ATPase, Ca++ transporting, plasma membrane 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chr  X:72,546,356...72,632,267
Ensembl chr  X:72,546,692...72,614,611 		JBrowse link
G Atp2b4 ATPase, Ca++ transporting, plasma membrane 4 involved_in ISO
IEA		 RGD
Ensembl		 PMID:16079002 GO_REF:0000107 RGD:2317729 NCBI chr 1:133,630,416...133,728,755
Ensembl chr 1:133,627,195...133,728,779 		JBrowse link
G Bsg basigin involved_in IMP (PMID:10967074), (PMID:11273674), (PMID:11853760) UniProt PMID:10967074 PMID:11273674 PMID:11853760 NCBI chr10:79,540,192...79,547,813
Ensembl chr10:79,540,325...79,547,803 		JBrowse link
G Casp2 caspase 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:9809666 GO_REF:0000107 RGD:4107085 NCBI chr 6:42,241,942...42,259,442
Ensembl chr 6:42,241,919...42,259,442 		JBrowse link
G Fos FBJ osteosarcoma oncogene involved_in ISO
IEA		 RGD
Ensembl		 PMID:20589906 GO_REF:0000107 RGD:405650605 NCBI chr12:85,520,664...85,524,048
Ensembl chr12:85,520,664...85,524,047 		JBrowse link
G Gpm6a glycoprotein m6a involved_in IDA (PMID:18776950) UniProt PMID:18776950 NCBI chr 8:55,232,469...55,513,913
Ensembl chr 8:55,407,878...55,513,906 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP
IDA		 (PMID:15716406) MGI PMID:15716406 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Optn optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chr 2:5,023,902...5,069,210
Ensembl chr 2:5,025,453...5,068,862 		JBrowse link
G Per1 period circadian clock 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:20589906 GO_REF:0000107 RGD:405650605 NCBI chr11:68,985,934...69,000,791
Ensembl chr11:68,986,043...69,000,786 		JBrowse link
G Per2 period circadian clock 2 ISO RGD PMID:20589906 RGD:405650605 NCBI chr 1:91,343,699...91,387,028
Ensembl chr 1:91,343,704...91,387,046 		JBrowse link
G Psen1 presenilin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:12401445 GO_REF:0000107 RGD:729595 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Rpe65 retinal pigment epithelium 65 involved_in ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:2631392 GO_REF:0000096 GO_REF:0000107 RGD:9585660 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
G Slc17a6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chr 7:51,271,578...51,320,874
Ensembl chr 7:51,271,754...51,320,867 		JBrowse link
G Slc17a7 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chr 7:44,813,345...44,825,563
Ensembl chr 7:44,813,373...44,825,566 		JBrowse link
G Slc17a8 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 involved_in ISO
IEA		 RGD
Ensembl		 PMID:18482716 GO_REF:0000107 RGD:9999162 NCBI chr10:89,409,882...89,457,111
Ensembl chr10:89,409,882...89,457,115 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 involved_in IEP (PMID:18816825) BHF-UCL PMID:18816825 NCBI chr 5:24,797,620...24,829,649
Ensembl chr 5:24,795,816...24,829,409 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (PMID:9217007) BHF-UCL PMID:9217007 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Usp45 ubiquitin specific petidase 45 involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:21,767,161...21,837,872
Ensembl chr 4:21,767,156...21,837,872 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within IMP (PMID:23129809) MGI PMID:23129809 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IGI (PMID:16611695) MGI PMID:16611695 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within IGI (PMID:16611695) MGI PMID:16611695 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Pax2 paired box 2 involved_in IMP (PMID:8951055) DFLAT PMID:8951055 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2, alpha involved_in IMP (PMID:20150232) UniProt PMID:20150232 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 sine oculis-related homeobox 3 involved_in IDA (PMID:11458394) UniProt PMID:11458394 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in IMP (PMID:20150232) UniProt PMID:20150232 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in IMP (PMID:21875655) UniProt PMID:21875655 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IMP (PMID:21875655) UniProt PMID:21875655 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IDA (PMID:18973577) MGI PMID:18973577 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within IDA (PMID:18926818) MGI PMID:18926818 NCBI chr 2:156,681,737...156,697,490
Ensembl chr 2:156,681,927...156,697,490 		JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISO
ISS
IMP		 (PMID:22527307)
(PMID:10652278), (PMID:16199865)		 GO_Central
UniProt		 PMID:10652278 PMID:16199865 PMID:22527307 GO_REF:0000119 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (PMID:18423449) UniProt PMID:18423449 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:37,402,616...37,464,255
Ensembl chr 3:37,402,495...37,464,257 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in IMP (PMID:16162653) UniProt PMID:16162653 NCBI chr 2:44,873,523...45,007,378
Ensembl chr 2:44,873,644...45,007,407 		JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:12717433) MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within
involved_in		 IMP (PMID:18791178)
(PMID:18832390)		 MGI
CACAO		 PMID:18791178 PMID:18832390 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) acts_upstream_of_or_within IMP (PMID:17060454) MGI PMID:17060454 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Krtap21-1 keratin associated protein 21-1 acts_upstream_of_or_within IMP (PMID:17151017) MGI PMID:17151017 NCBI chr16:89,199,915...89,200,662
Ensembl chr16:89,200,106...89,200,756 		JBrowse link
G Muc4 mucin 4 ISO RGD PMID:11120573 RGD:2303744 NCBI chr16:32,555,089...32,602,786
Ensembl chr16:32,555,015...32,602,754 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (PMID:10229225) MGI PMID:10229225 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within IGI (PMID:15955981) MGI PMID:15955981 NCBI chr17:27,238,786...27,247,601
Ensembl chr17:27,238,784...27,247,983 		JBrowse link
G Bax BCL2-associated X protein acts_upstream_of_or_within IGI (PMID:15955981) MGI PMID:15955981 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322 		JBrowse link
G Flt1 FMS-like tyrosine kinase 1 acts_upstream_of_or_within IGI (PMID:22426483) MGI PMID:22426483 NCBI chr 5:147,498,414...147,663,419
Ensembl chr 5:147,498,414...147,662,821 		JBrowse link
G Hmgn1 high mobility group nucleosomal binding domain 1 acts_upstream_of_or_within IMP (PMID:16466397) MGI PMID:16466397 NCBI chr16:95,922,788...95,928,925
Ensembl chr16:95,921,818...95,928,929 		JBrowse link
G Kdr kinase insert domain protein receptor acts_upstream_of_or_within IGI (PMID:22426483) MGI PMID:22426483 NCBI chr 5:76,093,487...76,139,880
Ensembl chr 5:76,093,487...76,139,118 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within IDA (PMID:24101522) MGI PMID:24101522 NCBI chr 8:84,935,147...84,935,221
Ensembl chr 8:84,935,147...84,935,221 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated involved_in
acts_upstream_of_or_within		 IMP (PMID:12915475)
(PMID:15316081), (PMID:16885194)		 MGI PMID:12915475 PMID:15316081 PMID:16885194 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within IMP (PMID:18216855) MGI PMID:18216855 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within IMP (PMID:10097103) MGI PMID:10097103 NCBI chr 8:13,455,081...13,471,951
Ensembl chr 8:13,455,081...13,471,951 		JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within IGI (PMID:9784491) MGI PMID:9784491 NCBI chr 6:134,897,364...134,902,488
Ensembl chr 6:134,897,364...134,902,476 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within IGI (PMID:9784491) MGI PMID:9784491 NCBI chr 7:143,012,076...143,014,735
Ensembl chr 7:143,012,076...143,014,787 		JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in IMP (PMID:22323600) UniProt PMID:22323600 NCBI chr 2:119,156,286...119,166,145
Ensembl chr 2:119,156,265...119,166,443 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in IMP (PMID:17075007) UniProt PMID:17075007 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Six3 sine oculis-related homeobox 3 involved_in IMP (PMID:20890044) UniProt PMID:20890044 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within IEP (PMID:23932931) MGI PMID:23932931 NCBI chr18:25,610,677...25,887,577
Ensembl chr18:25,610,689...25,887,214 		JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase acts_upstream_of_or_within IMP (PMID:15579149) MGI PMID:15579149 NCBI chr 5:137,286,516...137,292,728
Ensembl chr 5:137,285,781...137,292,728 		JBrowse link
G Actb actin, beta ISO RGD PMID:22916200 RGD:9587758 NCBI chr 5:142,888,870...142,892,509
Ensembl chr 5:142,888,870...142,892,509 		JBrowse link
G Agtpbp1 ATP/GTP binding protein 1 acts_upstream_of_or_within IMP (PMID:24791901)
(PMID:21052544)		 MGI PMID:21052544 PMID:24791901 NCBI chr13:59,597,348...59,705,184
Ensembl chr13:59,593,556...59,733,041 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within IMP (PMID:20592197) MGI PMID:20592197 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated acts_upstream_of_or_within IMP (PMID:31302159) MGI PMID:31302159 NCBI chr 6:85,564,482...85,698,973
Ensembl chr 6:85,564,513...85,679,735 		JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (PMID:10982921) MGI PMID:10982921 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within IMP (PMID:26975023) MGI PMID:26975023 NCBI chr11:109,364,159...109,464,156
Ensembl chr11:109,364,200...109,464,156 		JBrowse link
G Bax BCL2-associated X protein acts_upstream_of_or_within IMP (PMID:9699561) MGI PMID:9699561 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IMP (PMID:31302159) MGI PMID:31302159 NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:31302159), (PMID:36125046), (PMID:36700052) MGI PMID:31302159 PMID:36125046 PMID:36700052 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IMP (PMID:12654290) MGI PMID:12654290 NCBI chr 3:141,540,230...141,875,335
Ensembl chr 3:141,542,897...141,875,186 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO RGD PMID:10482474 RGD:5129487 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173 		JBrowse link
G C3 complement component 3 acts_upstream_of_or_within IGI (PMID:28057640) MGI PMID:28057640 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136 		JBrowse link
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr  X:7,473,342...7,501,435
Ensembl chr  X:7,473,322...7,501,435 		JBrowse link
G Calb1 calbindin 1 involved_in IEP (PMID:10741426) UniProt PMID:10741426 NCBI chr 4:15,881,264...15,906,709
Ensembl chr 4:15,881,264...15,908,064 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within IMP (PMID:21052544), (PMID:31302159) MGI PMID:21052544 PMID:31302159 NCBI chr10:100,323,410...100,409,527
Ensembl chr10:100,323,420...100,410,702 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within IGI (PMID:28057640) MGI PMID:28057640 NCBI chr10:79,726,687...79,728,489
Ensembl chr10:79,726,687...79,728,489 		JBrowse link
G Cfh complement component factor h acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 IGI
IMP		 (PMID:28057640)
(PMID:30705315)
(PMID:17921253), (PMID:28057640)		 MGI PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Clcn2 chloride channel, voltage-sensitive 2 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr16:20,521,185...20,536,496
Ensembl chr16:20,521,714...20,536,496 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within IMP (PMID:15565184)
(PMID:21052544)		 MGI PMID:15565184 PMID:21052544 NCBI chr 8:14,931,335...14,951,720
Ensembl chr 8:14,931,335...14,951,720 		JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 acts_upstream_of_or_within IGI (PMID:21124780) MGI PMID:21124780 NCBI chr 1:37,257,317...37,302,465
Ensembl chr 1:37,253,515...37,302,465 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:22447858), (PMID:25147295) MGI PMID:22447858 PMID:25147295 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 7:15,599,872...15,613,880
Ensembl chr 7:15,599,872...15,613,893 		JBrowse link
G Dcx doublecortin involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:142,638,838...142,716,392
Ensembl chr  X:142,638,838...142,716,307 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (PMID:19389377) UniProt PMID:19389377 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Dram2 DNA-damage regulated autophagy modulator 2 acts_upstream_of_or_within IMP (PMID:37691820) MGI PMID:37691820 NCBI chr 3:106,455,114...106,482,657
Ensembl chr 3:106,455,114...106,483,206 		JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chr 7:140,871,931...140,874,868
Ensembl chr 7:140,871,919...140,876,377 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23954924 GO_REF:0000107 RGD:11251759 NCBI chr13:45,075,552...45,155,614
Ensembl chr13:45,075,551...45,155,623 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within IMP (PMID:27715390) MGI PMID:27715390 NCBI chr 9:110,133,321...110,151,170
Ensembl chr 9:110,134,241...110,151,170 		JBrowse link
G Gdnf glial cell line derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IGI
IMP		 (PMID:21124780)
(PMID:21052544)		 MGI PMID:21052544 PMID:21124780 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 4:155,575,514...155,643,726
Ensembl chr 4:155,575,818...155,643,726 		JBrowse link
G Grm6 glutamate receptor, metabotropic 6 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr11:50,741,205...50,757,035
Ensembl chr11:50,741,512...50,757,035 		JBrowse link
G Grn granulin acts_upstream_of_or_within IMP (PMID:28728022) MGI PMID:28728022 NCBI chr11:102,321,333...102,327,635
Ensembl chr11:102,321,141...102,327,874 		JBrowse link
G Hpca hippocalcin involved_in ISO
IEA		 RGD
Ensembl		 PMID:7789406 GO_REF:0000107 RGD:9686441 NCBI chr 4:129,005,363...129,019,712
Ensembl chr 4:129,005,363...129,015,829 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr19:42,743,629...42,770,013
Ensembl chr19:42,743,544...42,768,417 		JBrowse link
G Il4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 6:29,200,435...29,216,363
Ensembl chr 6:29,200,433...29,216,363 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chr 9:108,437,635...108,442,776
Ensembl chr 9:108,437,485...108,442,783 		JBrowse link
G Jmjd6 jumonji domain containing 6 acts_upstream_of_or_within IMP (PMID:15345036) MGI PMID:15345036 NCBI chr11:116,728,258...116,734,593
Ensembl chr11:116,728,258...116,734,275 		JBrowse link
G Lama1 laminin, alpha 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr17:68,004,129...68,129,640
Ensembl chr17:68,004,254...68,129,642 		JBrowse link
G Lamb2 laminin, beta 2 acts_upstream_of_or_within IGI (PMID:19907020) MGI PMID:19907020 NCBI chr 9:108,357,080...108,367,729
Ensembl chr 9:108,356,935...108,367,729 		JBrowse link
G Lamc3 laminin gamma 3 acts_upstream_of_or_within IGI (PMID:19907020) MGI PMID:19907020 NCBI chr 2:31,777,293...31,839,095
Ensembl chr 2:31,777,303...31,836,551 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:16111892) MGI PMID:16111892 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IEP (PMID:10741426) UniProt PMID:10741426 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Lhx2 LIM homeobox protein 2 acts_upstream_of_or_within IGI (PMID:19146846) MGI PMID:19146846 NCBI chr 2:38,229,282...38,259,747
Ensembl chr 2:38,229,293...38,259,745 		JBrowse link
G Lif leukemia inhibitory factor involved_in ISO RGD
GO_Central		 PMID:16643897 GO_REF:0000096 RGD:2326157 NCBI chr11:4,207,587...4,222,514
Ensembl chr11:4,207,557...4,222,514 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr13:73,615,332...73,664,539
Ensembl chr13:73,615,316...73,664,541 		JBrowse link
G Max Max protein involved_in ISO
IEA		 RGD
Ensembl		 PMID:14603520 GO_REF:0000107 RGD:2316820 NCBI chr12:76,984,045...77,009,123
Ensembl chr12:76,984,043...77,008,975 		JBrowse link
G Mdm1 MDM1 nuclear protein acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:21052544) MGI
GO_Central		 PMID:21052544 GO_REF:0000033 NCBI chr10:117,977,446...118,004,904
Ensembl chr10:117,977,716...118,004,902 		JBrowse link
G Mertk MER proto-oncogene tyrosine kinase acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 2:128,540,836...128,645,082
Ensembl chr 2:128,540,876...128,644,814 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 9:44,013,067...44,020,484
Ensembl chr 9:44,013,026...44,020,484 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within IMP (PMID:27654426) MGI PMID:27654426 NCBI chr 3:40,772,500...40,801,322
Ensembl chr 3:40,772,538...40,801,321 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within IGI (PMID:23341629)
(PMID:28819115)		 MGI PMID:23341629 PMID:28819115 NCBI chr 6:30,165,917...30,165,991
Ensembl chr 6:30,165,917...30,165,991 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within IGI (PMID:23341629)
(PMID:28819115)		 MGI PMID:23341629 PMID:28819115 NCBI chr 6:30,169,667...30,169,736
Ensembl chr 6:30,169,667...30,169,736 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within IGI (PMID:23341629)
(PMID:28819115)		 MGI PMID:23341629 PMID:28819115 NCBI chr 6:30,169,445...30,169,550
Ensembl chr 6:30,169,445...30,169,550 		JBrowse link
G Musk muscle, skeletal, receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chr 4:58,285,742...58,377,848
Ensembl chr 4:58,285,962...58,374,303 		JBrowse link
G Myh10 myosin, heavy polypeptide 10, non-muscle acts_upstream_of_or_within IMP (PMID:11283949), (PMID:9356462) MGI PMID:9356462 PMID:11283949 NCBI chr11:68,581,228...68,707,451
Ensembl chr11:68,582,385...68,707,458 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) acts_upstream_of_or_within IMP (PMID:26607664) MGI PMID:26607664 NCBI chr11:100,960,918...100,968,483
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr 9:43,655,251...43,718,758
Ensembl chr 9:43,655,281...43,743,955 		JBrowse link
G Neurod4 neurogenic differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chr10:130,104,021...130,116,123
Ensembl chr10:130,104,021...130,116,109 		JBrowse link
G Nfia nuclear factor I/A acts_upstream_of_or_within IMP (PMID:31128945) MGI PMID:31128945 NCBI chr 4:97,469,534...98,007,113
Ensembl chr 4:97,660,971...98,007,111 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within IMP (PMID:31128945) MGI PMID:31128945 NCBI chr 4:82,208,410...82,424,988
Ensembl chr 4:82,208,410...82,623,987 		JBrowse link
G Nfix nuclear factor I/X acts_upstream_of_or_within IMP (PMID:31128945) MGI PMID:31128945 NCBI chr 8:85,431,341...85,527,086
Ensembl chr 8:85,426,505...85,526,973 		JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell ISO RGD PMID:16639026 RGD:7771562 NCBI chr 5:24,569,772...24,589,472
Ensembl chr 5:24,569,808...24,589,472 		JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) involved_in IMP (PMID:19208653) UniProt PMID:19208653 NCBI chr 2:127,582,652...127,630,833
Ensembl chr 2:127,582,652...127,630,817 		JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 4:152,561,163...152,647,641
Ensembl chr 4:152,561,163...152,647,640 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IMP (PMID:11997145)
(PMID:16702404)		 MGI PMID:11997145 PMID:16702404 NCBI chr10:42,437,959...42,459,721
Ensembl chr10:42,437,959...42,459,628 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IMP (PMID:12407160)
(PMID:21052544)		 MGI PMID:12407160 PMID:21052544 NCBI chr 9:59,850,054...59,868,117
Ensembl chr 9:59,850,054...59,867,942 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 ISO RGD PMID:22714110 RGD:124713571 NCBI chr 2:56,996,845...57,014,152
Ensembl chr 2:56,996,842...57,014,015 		JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 acts_upstream_of_or_within IMP (PMID:25542970) MGI PMID:25542970 NCBI chr13:58,954,363...59,281,782
Ensembl chr13:58,954,383...59,281,784 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chr16:29,398,099...29,481,924
Ensembl chr16:29,398,152...29,473,702 		JBrowse link
G Opn4 opsin 4 (melanopsin) acts_upstream_of_or_within IGI (PMID:21124780) MGI PMID:21124780 NCBI chr14:34,312,575...34,322,099
Ensembl chr14:34,312,575...34,322,099 		JBrowse link
G Pax4 paired box 4 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:19012751 GO_REF:0000033 GO_REF:0000107 RGD:2311636 NCBI chr 6:28,442,333...28,449,339
Ensembl chr 6:28,442,333...28,449,352 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 ISO
IBA
IGI		 (PMID:19146846) RGD
GO_Central
MGI		 PMID:19012751 PMID:19146846 GO_REF:0000033 RGD:2311636 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:21052544) GO_Central
MGI		 PMID:21052544 GO_REF:0000033 NCBI chr18:61,353,546...61,426,698
Ensembl chr18:61,353,387...61,422,995 		JBrowse link
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:21052544) GO_Central
MGI		 PMID:21052544 GO_REF:0000033 NCBI chr 5:108,536,239...108,579,609
Ensembl chr 5:108,536,257...108,580,263 		JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (PMID:25224828) MGI PMID:25224828 NCBI chr15:79,880,066...79,899,178
Ensembl chr15:79,880,075...79,899,178 		JBrowse link
G Pfdn5 prefoldin 5 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr15:102,234,551...102,239,925
Ensembl chr15:102,234,551...102,240,308 		JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 acts_upstream_of_or_within IMP (PMID:9630743)
(PMID:8637595)		 MGI PMID:8637595 PMID:9630743 NCBI chr 8:79,159,638...79,163,276
Ensembl chr 8:79,159,639...79,163,274 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within IMP
IGI		 (PMID:15964665)
(PMID:28053051)
(PMID:21052544)		 MGI PMID:15964665 PMID:21052544 PMID:28053051 NCBI chr17:47,221,404...47,235,859
Ensembl chr17:47,221,385...47,235,859 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chr 6:36,691,863...36,787,114
Ensembl chr 6:36,691,864...36,787,155 		JBrowse link
G Rbp4 retinol binding protein 4, plasma acts_upstream_of_or_within IMP (PMID:11562477) MGI PMID:11562477 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729 		JBrowse link
G Rd3 retinal degeneration 3 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:8486383)
(PMID:21052544)		 GO_Central
UniProt
MGI		 PMID:8486383 PMID:21052544 GO_REF:0000033 NCBI chr 1:191,688,574...191,725,497
Ensembl chr 1:191,709,331...191,720,244 		JBrowse link
G Ret ret proto-oncogene involved_in ISO
IEA		 RGD
Ensembl		 PMID:16650834 GO_REF:0000107 RGD:2324945 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
G Rnpep arginyl aminopeptidase (aminopeptidase B) ISO RGD PMID:15500823 RGD:2325937 NCBI chr 1:135,190,447...135,211,765
Ensembl chr 1:135,190,450...135,211,822 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IGI
IMP		 (PMID:28053051) MGI PMID:28053051 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IMP (PMID:23652001) UniProt PMID:23652001 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:21052544) MGI
GO_Central		 PMID:21052544 GO_REF:0000033 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:64,229,880...64,270,955
Ensembl chr14:64,229,955...64,272,474 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr14:52,341,698...52,398,796
Ensembl chr14:52,348,161...52,401,003 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within IMP (PMID:10049578), (PMID:9331275) MGI PMID:9331275 PMID:10049578 NCBI chr16:55,786,638...55,791,800
Ensembl chr16:55,786,638...55,791,798 		JBrowse link
G Rrm1 ribonucleotide reductase M1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:2647502 GO_REF:0000107 RGD:5133699 NCBI chr 7:102,090,902...102,118,978
Ensembl chr 7:102,090,902...102,118,978 		JBrowse link
G Scaper S phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) MGI PMID:28794130 NCBI chr 9:55,457,163...55,845,505
Ensembl chr 9:55,457,163...55,845,403 		JBrowse link
G Serpinf1 serine (or cysteine) peptidase inhibitor, clade F, member 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:21738387 GO_REF:0000107 RGD:8655555 NCBI chr11:75,300,855...75,313,449
Ensembl chr11:75,300,595...75,313,527 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (PMID:17003410) MGI PMID:17003410 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Slc1a1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 involved_in IMP (PMID:28703795) MGI PMID:28703795 NCBI chr19:28,812,535...28,891,360
Ensembl chr19:28,812,449...28,891,360 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within IMP (PMID:37862028) MGI PMID:37862028 NCBI chr 8:120,206,313...120,228,503
Ensembl chr 8:120,206,341...120,228,437 		JBrowse link
G Slc4a5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 acts_upstream_of_or_within IMP (PMID:21705333) MGI PMID:21705333 NCBI chr 6:83,184,561...83,281,927
Ensembl chr 6:83,196,810...83,281,927 		JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr17:25,784,865...25,789,666
Ensembl chr17:25,784,634...25,789,726 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IGI (PMID:19490914) MGI PMID:19490914 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (PMID:20711468) MGI PMID:20711468 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chr13:93,282,363...93,330,662
Ensembl chr13:93,282,790...93,328,893 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IDA (PMID:18973577) MGI PMID:18973577 NCBI chr17:71,151,200...71,160,527
Ensembl chr17:71,151,200...71,160,541 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within IDA (PMID:18926818) MGI PMID:18926818 NCBI chr 2:156,681,737...156,697,490
Ensembl chr 2:156,681,927...156,697,490 		JBrowse link
G Ttll5 tubulin tyrosine ligase-like family, member 5 acts_upstream_of_or_within ISO (PMID:24791901) MGI PMID:24791901 NCBI chr12:85,871,417...86,100,534
Ensembl chr12:85,871,433...86,108,667 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 7:108,610,087...108,633,666
Ensembl chr 7:108,549,545...108,633,667 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr17:28,570,489...28,584,190
Ensembl chr17:28,570,489...28,584,196 		JBrowse link
G Uchl3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr14:101,891,387...101,933,561
Ensembl chr14:101,891,403...101,933,561 		JBrowse link
G Ush2a usherin ISO RGD PMID:12160733 RGD:634438 NCBI chr 1:187,995,035...188,697,694
Ensembl chr 1:187,994,220...188,697,238 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IDA (PMID:10595508) MGI PMID:10595508 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23700402 GO_REF:0000107 RGD:11041783 NCBI chr 2:146,854,672...146,919,922
Ensembl chr 2:146,854,916...146,919,920 		JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 5:31,356,325...31,360,007
Ensembl chr 5:31,356,325...31,359,647 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6 ADP-ribosylation factor-like 6 acts_upstream_of_or_within IMP (PMID:20333246)
(PMID:22139371)		 MGI PMID:20333246 PMID:22139371 NCBI chr16:59,433,312...59,459,772
Ensembl chr16:59,433,312...59,459,754 		JBrowse link
G Atp8a2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 involved_in IMP (PMID:24413176) UniProt PMID:24413176 NCBI chr14:59,884,980...60,324,363
Ensembl chr14:59,875,989...60,434,628 		JBrowse link
G Calb1 calbindin 1 involved_in IEP (PMID:10741426) UniProt PMID:10741426 NCBI chr 4:15,881,264...15,906,709
Ensembl chr 4:15,881,264...15,908,064 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated acts_upstream_of_or_within IMP (PMID:17234588) MGI PMID:17234588 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS UniProt GO_REF:0000024 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within IGI (PMID:21903076) MGI PMID:21903076 NCBI chr 9:15,821,485...16,413,981
Ensembl chr 9:15,821,485...16,412,581 		JBrowse link
G Fjx1 four jointed box 1 acts_upstream_of_or_within IGI (PMID:21903076) MGI PMID:21903076 NCBI chr 2:102,279,711...102,282,137
Ensembl chr 2:102,279,711...102,282,844 		JBrowse link
G Foxn4 forkhead box N4 involved_in IMP (PMID:15363391) UniProt PMID:15363391 NCBI chr 5:114,392,225...114,412,486
Ensembl chr 5:114,392,225...114,411,868 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 3:103,647,131...103,699,210
Ensembl chr 3:103,647,131...103,698,879 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IMP (PMID:20579985) DFLAT PMID:20579985 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Irx6 Iroquois homeobox 6 acts_upstream_of_or_within IMP (PMID:23172916) MGI PMID:23172916 NCBI chr 8:93,400,917...93,407,584
Ensembl chr 8:93,400,916...93,407,584 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:16111892) MGI PMID:16111892 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IEP
IMP		 (PMID:10741426)
(PMID:18094249)		 UniProt PMID:10741426 PMID:18094249 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in IMP (PMID:22407321) UniProt PMID:22407321 NCBI chr 9:64,291,556...64,618,584
Ensembl chr 9:64,292,908...64,616,487 		JBrowse link
G Mir145a microRNA 145a ISO RGD PMID:34291866 RGD:155260301 NCBI chr18:61,780,896...61,780,965
Ensembl chr18:61,780,896...61,780,965 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:29654250) MGI PMID:29654250 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Prom1 prominin 1 involved_in IMP (PMID:19228982) UniProt PMID:19228982 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a involved_in IMP (PMID:17075007) UniProt PMID:17075007 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Ptprm protein tyrosine phosphatase receptor type M involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr17:66,973,843...67,661,486
Ensembl chr17:66,973,942...67,661,452 		JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) acts_upstream_of_or_within IMP (PMID:22605914) MGI PMID:22605914 NCBI chr 7:4,428,664...4,474,279
Ensembl chr 7:4,427,769...4,448,648 		JBrowse link
G Rs1 retinoschisis (X-linked, juvenile) 1 (human) acts_upstream_of_or_within IMP (PMID:15326152)
(PMID:11983912)		 MGI PMID:11983912 PMID:15326152 NCBI chr  X:159,548,815...159,584,800
Ensembl chr  X:159,551,009...159,582,659 		JBrowse link
G Sdk1 sidekick cell adhesion molecule 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:141,227,252...142,201,377
Ensembl chr 5:141,227,245...142,201,341 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in IMP
ISS		 (PMID:26287463) UniProt PMID:26287463 GO_REF:0000024 NCBI chr11:113,667,200...113,957,855
Ensembl chr11:113,667,200...113,957,872 		JBrowse link
G Slc1a1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 involved_in
acts_upstream_of_or_within		 IMP (PMID:29677370)
(PMID:19766171)		 MGI PMID:19766171 PMID:29677370 NCBI chr19:28,812,535...28,891,360
Ensembl chr19:28,812,449...28,891,360 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,279,132...19,309,071
Ensembl chr 1:19,279,138...19,308,800 		JBrowse link
G Tspan12 tetraspanin 12 involved_in IMP (PMID:19837033) UniProt PMID:19837033 NCBI chr 6:21,771,390...21,879,557
Ensembl chr 6:21,771,394...21,852,514 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within IMP (PMID:17092954) MGI PMID:17092954 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated involved_in
acts_upstream_of_or_within		 IMP (PMID:12915475)
(PMID:17234588), (PMID:25147295)		 MGI PMID:12915475 PMID:17234588 PMID:25147295 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (PMID:19389377) UniProt PMID:19389377 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within IMP (PMID:32265257) MGI PMID:32265257 NCBI chr16:56,019,447...56,094,119
Ensembl chr16:56,024,676...56,094,119 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:18985738) MGI PMID:18985738 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Man2a1 mannosidase 2, alpha 1 acts_upstream_of_or_within IMP (PMID:20144606) MGI PMID:20144606 NCBI chr17:64,907,683...65,062,105
Ensembl chr17:64,907,731...65,062,105 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IMP (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IDA
IMP		 (PMID:15716406) MGI PMID:15716406 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within IMP (PMID:15728677) MGI PMID:15728677 NCBI chr16:46,208,028...46,318,898
Ensembl chr16:46,208,069...46,318,888 		JBrowse link
G Prom1 prominin 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:44,150,963...44,260,850
Ensembl chr 5:44,150,962...44,259,374 		JBrowse link
G Ptf1a pancreas specific transcription factor, 1a acts_upstream_of_or_within IMP (PMID:17301087) MGI PMID:17301087 NCBI chr 2:19,450,474...19,452,312
Ensembl chr 2:19,450,474...19,452,312 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IMP (PMID:10725384) MGI PMID:10725384 NCBI chr  X:10,024,455...10,083,034
Ensembl chr  X:9,939,860...10,083,159 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of_or_within IMP (PMID:16651659) MGI PMID:16651659 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IMP (PMID:16854970), (PMID:8630490) MGI PMID:8630490 PMID:16854970 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin receptor IIB involved_in IMP (PMID:19903896) BHF-UCL PMID:19903896 NCBI chr 9:119,231,081...119,271,214
Ensembl chr 9:119,231,184...119,264,061 		JBrowse link
G Acvrl1 activin A receptor, type II-like 1 involved_in IMP (PMID:19903896) BHF-UCL PMID:19903896 NCBI chr15:101,026,403...101,043,217
Ensembl chr15:101,026,403...101,043,217 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in IMP (PMID:19903896) BHF-UCL PMID:19903896 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within IMP (PMID:19005183) MGI PMID:19005183 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within IMP (PMID:23217714)
(PMID:25083995), (PMID:25414188)		 MGI PMID:23217714 PMID:25083995 PMID:25414188 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (PMID:21212189) MGI PMID:21212189 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:16111892) MGI PMID:16111892 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 acts_upstream_of_or_within IMP (PMID:22272305)
(PMID:25083995)		 MGI PMID:22272305 PMID:25083995 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Mir218-1 microRNA 218-1 acts_upstream_of_or_within IMP (PMID:20947829) MGI PMID:20947829 NCBI chr 5:48,381,284...48,381,393
Ensembl chr 5:48,381,284...48,381,393 		JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within IMP (PMID:20947829) MGI PMID:20947829 NCBI chr11:35,507,643...35,507,752
Ensembl chr11:35,507,643...35,507,752 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr 8:84,935,147...84,935,221
Ensembl chr 8:84,935,147...84,935,221 		JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr13:63,448,298...63,448,371
Ensembl chr13:63,448,298...63,448,371 		JBrowse link
G Mir24-1 microRNA 24-1 acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr13:63,449,022...63,449,089
Ensembl chr13:63,449,022...63,449,089 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr 8:84,935,444...84,935,550
Ensembl chr 8:84,935,444...84,935,550 		JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr 8:84,935,301...84,935,387
Ensembl chr 8:84,935,301...84,935,387 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within IMP (PMID:21536891) MGI PMID:21536891 NCBI chr13:63,448,526...63,448,598
Ensembl chr13:63,448,526...63,448,598 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IDA
IMP		 (PMID:15716406), (PMID:29715368)
(PMID:25083995), (PMID:25414188)
(PMID:23217714)
(PMID:15716406), (PMID:18978344), (PMID:28575130), (PMID:29654250)		 MGI PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within IMP (PMID:25414188) MGI PMID:25414188 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844 		JBrowse link
G Pdgfb platelet derived growth factor, B polypeptide acts_upstream_of_or_within IMP (PMID:25224828) MGI PMID:25224828 NCBI chr15:79,880,066...79,899,178
Ensembl chr15:79,880,075...79,899,178 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IGI (PMID:11239463) UniProt PMID:11239463 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Pdgfrb platelet derived growth factor receptor, beta polypeptide involved_in IGI
IMP		 (PMID:11239463)
(PMID:14624252)		 UniProt PMID:11239463 PMID:14624252 NCBI chr18:61,178,194...61,218,139
Ensembl chr18:61,178,222...61,218,133 		JBrowse link
G Rom1 rod outer segment membrane protein 1 acts_upstream_of_or_within IMP (PMID:20300562) MGI PMID:20300562 NCBI chr19:8,904,746...8,906,720
Ensembl chr19:8,904,755...8,906,720 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IDA (PMID:29715368) MGI PMID:29715368 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within IDA (PMID:31698979) MGI PMID:31698979 NCBI chr14:32,578,713...32,661,448
Ensembl chr14:32,578,713...32,661,448 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within IMP (PMID:22535667) MGI PMID:22535667 NCBI chr11:68,819,726...68,847,760
Ensembl chr11:68,833,981...68,848,306 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within IMP (PMID:19197003) MGI PMID:19197003 NCBI chr 4:134,941,280...135,000,071
Ensembl chr 4:134,941,280...135,000,125 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within
involved_in		 IGI
ISO
IBA
IMP		 (PMID:19837032) MGI
GO_Central		 PMID:19837032 GO_REF:0000033 GO_REF:0000119 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in
acts_upstream_of_or_within		 ISO
IMP
IGI		 (PMID:11956231)
(PMID:19837032)
(PMID:18263894)		 RGD
GO_Central
MGI		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 GO_REF:0000096 RGD:40902996 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP
IGI		 (PMID:18978344)
(PMID:19837032)		 MGI PMID:18978344 PMID:19837032 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Nrp1 neuropilin 1 involved_in IMP (PMID:24401374) BHF-UCL PMID:24401374 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within IMP (PMID:22535667) MGI PMID:22535667 NCBI chr12:75,355,087...75,448,229
Ensembl chr12:75,355,096...75,448,230 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (PMID:12808454) MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within IMP (PMID:17092954) MGI PMID:17092954 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr19:4,185,422...4,189,608
Ensembl chr19:4,185,422...4,194,032 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within IDA (PMID:24467707) MGI PMID:24467707 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IDA (PMID:25654255) MGI PMID:25654255 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Irx5 Iroquois homeobox 5 acts_upstream_of_or_within IGI (PMID:18322081) MGI PMID:18322081 NCBI chr 8:93,084,424...93,088,084
Ensembl chr 8:93,084,253...93,102,914 		JBrowse link
G Irx6 Iroquois homeobox 6 acts_upstream_of_or_within IMP (PMID:23172916) MGI PMID:23172916 NCBI chr 8:93,400,917...93,407,584
Ensembl chr 8:93,400,916...93,407,584 		JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain acts_upstream_of_or_within IMP (PMID:28199486) MGI PMID:28199486 NCBI chr10:44,313,170...44,404,579
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:15043821)
(PMID:18322081)
(PMID:14745032)		 MGI PMID:14745032 PMID:15043821 PMID:18322081 NCBI chr 2:150,522,622...150,531,057
Ensembl chr 2:150,522,622...150,531,280 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IMP (PMID:8630490) MGI PMID:8630490 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in IMP (PMID:30146259) UniProt PMID:30146259 NCBI chr15:57,558,063...57,703,228
Ensembl chr15:57,558,061...57,703,228 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen, type IV, alpha 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:11,248,423...11,362,889
Ensembl chr 8:11,248,423...11,362,826 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IMP (PMID:20032512) UniProt PMID:20032512 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in IMP (PMID:15035989) BHF-UCL PMID:15035989 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Lama1 laminin, alpha 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr17:68,004,129...68,129,640
Ensembl chr17:68,004,254...68,129,642 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in IMP (PMID:27031698) CACAO PMID:27031698 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:18978344), (PMID:22394677), (PMID:28575130) MGI PMID:18978344 PMID:22394677 PMID:28575130 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IMP (PMID:20081859) CACAO PMID:20081859 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IMP (PMID:16249514) MGI PMID:16249514 NCBI chr19:4,185,422...4,189,608
Ensembl chr19:4,185,422...4,194,032 		JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr 1:37,257,317...37,302,465
Ensembl chr 1:37,253,515...37,302,465 		JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (PMID:23001562) UniProt PMID:23001562 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Dio3 deiodinase, iodothyronine type III acts_upstream_of_or_within IMP (PMID:20203194) MGI PMID:20203194 NCBI chr12:110,245,664...110,247,531
Ensembl chr12:110,245,502...110,247,531 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IMP (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr13:117,738,856...118,117,564
Ensembl chr13:117,738,856...118,123,954 		JBrowse link
G Mir124a-1 microRNA 124a-1 acts_upstream_of_or_within IGI
IMP		 (PMID:21857657) MGI PMID:21857657 NCBI chr14:64,828,106...64,828,190
Ensembl chr14:64,828,106...64,828,190 		JBrowse link
G Mir124a-2 microRNA 124a-2 acts_upstream_of_or_within IGI (PMID:21857657) MGI PMID:21857657 NCBI chr 3:17,849,826...17,849,934
Ensembl chr 3:17,849,826...17,849,934 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,165,917...30,165,991
Ensembl chr 6:30,165,917...30,165,991 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,169,667...30,169,736
Ensembl chr 6:30,169,667...30,169,736 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within IGI (PMID:23341629) MGI PMID:23341629 NCBI chr 6:30,169,445...30,169,550
Ensembl chr 6:30,169,445...30,169,550 		JBrowse link
G Pde6c phosphodiesterase 6C, cGMP specific, cone, alpha prime acts_upstream_of_or_within IMP (PMID:21052544) MGI PMID:21052544 NCBI chr19:38,121,220...38,172,391
Ensembl chr19:38,121,229...38,172,406 		JBrowse link
G Rorb RAR-related orphan receptor beta involved_in IDA (PMID:16574740) UniProt PMID:16574740 NCBI chr19:18,907,966...19,088,560
Ensembl chr19:18,907,969...19,088,560 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) involved_in IDA (PMID:14507858) UniProt PMID:14507858 NCBI chr 1:4,185,896...4,479,508
Ensembl chr 1:4,069,780...4,479,464 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IMP (PMID:20203194) MGI PMID:20203194 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
G Thy1 thymus cell antigen 1, theta involved_in IMP (PMID:10567740) UniProt PMID:10567740 NCBI chr 9:43,954,681...43,959,876
Ensembl chr 9:43,954,681...43,959,876 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IMP (PMID:36125046) MGI PMID:36125046 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IMP
IGI
IDA		 (PMID:19815523) MGI PMID:19815523 NCBI chr 9:107,551,636...107,556,833
Ensembl chr 9:107,551,673...107,556,911 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IGI
IDA
IMP		 (PMID:19815523) MGI PMID:19815523 NCBI chr 3:107,994,120...108,008,748
Ensembl chr 3:108,000,105...108,008,748 		JBrowse link
G Notch1 notch 1 acts_upstream_of IMP (PMID:16452096) MGI PMID:16452096 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement component factor h acts_upstream_of_or_within IMP (PMID:23844226), (PMID:25991857) MGI PMID:23844226 PMID:25991857 NCBI chr 1:140,013,593...140,111,149
Ensembl chr 1:140,012,446...140,111,502 		JBrowse link
G Cldn19 claudin 19 involved_in IMP (PMID:30937396) UniProt PMID:30937396 NCBI chr 4:119,112,638...119,119,635
Ensembl chr 4:119,112,611...119,119,635 		JBrowse link
G Cldn3 claudin 3 involved_in ISO (PMID:27593915) ARUK-UCL PMID:27593915 NCBI chr 5:135,015,068...135,016,330
Ensembl chr 5:135,015,068...135,016,326 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:18582859) MGI PMID:18582859 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Med1 mediator complex subunit 1 involved_in IMP (PMID:11724781) BHF-UCL PMID:11724781 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within IMP (PMID:27008858) ARUK-UCL PMID:27008858 NCBI chr 4:122,840,643...122,855,844
Ensembl chr 4:122,840,643...122,854,981 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) acts_upstream_of_or_within IMP (PMID:9071226) MGI PMID:9071226 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Pax2 paired box 2 involved_in IMP (PMID:8951055) DFLAT PMID:8951055 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within IMP (PMID:37862028) MGI PMID:37862028 NCBI chr 8:120,206,313...120,228,503
Ensembl chr 8:120,206,341...120,228,437 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IMP (PMID:20159594) MGI PMID:20159594 NCBI chr10:55,890,389...56,106,495
Ensembl chr10:55,890,389...56,104,785 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within IMP (PMID:33064130) MGI PMID:33064130 NCBI chr 7:88,789,230...89,053,911
Ensembl chr 7:88,788,922...89,053,430 		JBrowse link
retinal rod cell development term browser