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ONTOLOGY REPORT - ANNOTATIONS

Term:camera-type eye development
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Accession:GO:0043010 term browser browse the term
Definition:The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
Synonyms:alt_id: GO:0001747;   GO:0031075
 never_in_taxon: NCBITaxon:6656 ! Arthropoda

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camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 acts_upstream_of_or_within ISO (PMID:15572692) MGI PMID:15572692 NCBI chrNW_004955457:11,451,851...11,562,692
Ensembl chrNW_004955457:11,451,851...11,562,696 		JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493) DFLAT PMID:10973493 MGI:1889403 NCBI chrNW_004955410:20,428,531...20,459,482
Ensembl chrNW_004955410:20,428,546...20,456,836 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16368932)
(PMID:15366004)		 MGI PMID:15366004 PMID:16368932 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO (PMID:11044403) MGI PMID:11044403 NCBI chrNW_004955574:915,604...984,744
Ensembl chrNW_004955574:915,325...984,744 		JBrowse link
G B3glct beta 3-glucosyltransferase acts_upstream_of_or_within ISO (PMID:31600785) MGI PMID:31600785 NCBI chrNW_004955431:14,507,184...14,621,376
Ensembl chrNW_004955431:14,507,184...14,633,351 		JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004955467:405,487...415,887
Ensembl chrNW_004955467:405,490...416,116 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:14681194)
(PMID:9268572)		 MGI PMID:9268572 PMID:14681194 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:15673568) MGI PMID:15673568 NCBI chrNW_004955405:5,408,171...5,784,930
Ensembl chrNW_004955405:5,700,162...5,787,957 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) BHF-UCL PMID:15454078 NCBI chrNW_004955454:4,573,647...5,199,046
Ensembl chrNW_004955454:4,490,923...5,198,506 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469) MGI PMID:24947469 NCBI chrNW_004955480:8,404,239...8,514,792
Ensembl chrNW_004955480:8,400,284...8,514,736 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (PMID:19276117) MGI PMID:19276117 NCBI chrNW_004955422:14,576,971...14,578,868 JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:16207732) MGI PMID:16207732 NCBI chrNW_004955444:17,859,999...18,067,623
Ensembl chrNW_004955444:17,858,771...18,067,248 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:12546709) MGI PMID:12546709 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Cryab crystallin alpha B acts_upstream_of_or_within ISO (PMID:12546709) MGI PMID:12546709 NCBI chrNW_004955412:13,626,018...13,629,495
Ensembl chrNW_004955412:13,625,363...13,640,426 		JBrowse link
G Cryba1 crystallin beta A1 acts_upstream_of_or_within ISO (PMID:10585769) MGI PMID:10585769 NCBI chrNW_004955481:3,952,976...3,986,548
Ensembl chrNW_004955481:3,952,988...3,959,764 		JBrowse link
G Cryba4 crystallin beta A4 involved_in ISO (PMID:16960806) UniProt PMID:16960806 NCBI chrNW_004955455:1,176,668...1,187,731
Ensembl chrNW_004955455:1,176,668...1,187,731 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955424:27,181,717...27,240,067
Ensembl chrNW_004955424:27,181,099...27,240,446 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO (PMID:26114487) MGI PMID:26114487 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955409:5,281,603...5,502,547
Ensembl chrNW_004955409:5,281,603...5,504,761 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) UniProt PMID:25406291 NCBI chrNW_004955415:1,307,553...1,535,435
Ensembl chrNW_004955415:1,309,077...1,537,052 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:15105374) MGI PMID:15105374 NCBI chrNW_004955524:3,037,825...3,044,296
Ensembl chrNW_004955524:3,036,953...3,044,296 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO (PMID:19155270)
(PMID:23591631)		 MGI PMID:19155270 PMID:23591631 NCBI chrNW_004955574:779,672...789,621
Ensembl chrNW_004955574:786,758...788,348 		JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within ISO (PMID:17619227) MGI PMID:17619227 NCBI chrNW_004955432:20,205,369...20,589,608
Ensembl chrNW_004955432:20,334,237...20,589,352 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Gja8 gap junction protein alpha 8 acts_upstream_of_or_within ISO (PMID:15253273)
(PMID:11782410)		 MGI PMID:11782410 PMID:15253273 NCBI chrNW_004955568:514,905...516,551
Ensembl chrNW_004955568:515,113...516,435 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:32049342) MGI PMID:32049342 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO (PMID:21296886) MGI PMID:21296886 NCBI chrNW_004955449:16,695,855...16,804,184
Ensembl chrNW_004955449:16,695,435...16,802,908 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within ISO (PMID:21377456) MGI PMID:21377456 NCBI chrNW_004955417:26,401,337...26,533,297
Ensembl chrNW_004955417:26,401,363...26,533,297 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (MGI:3703278|PMID:17331197) UniProt PMID:17331197 MGI:3703278 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (PMID:19093031) MGI PMID:19093031 NCBI chrNW_004955430:6,955,575...6,956,991
Ensembl chrNW_004955430:6,955,575...6,956,991 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:10196361) MGI PMID:10196361 NCBI chrNW_004955415:20,490,414...20,526,068
Ensembl chrNW_004955415:20,490,414...20,527,917 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO (PMID:9238094) MGI PMID:9238094 NCBI chrNW_004955558:1,019,709...1,024,375
Ensembl chrNW_004955558:1,019,244...1,024,375 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:20568247)
(PMID:10660670)		 MGI PMID:10660670 PMID:20568247 NCBI chrNW_004955419:1,782,566...1,857,375
Ensembl chrNW_004955419:1,782,566...1,857,375 		JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO RGD PMID:15967433 RGD:2306661 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488 		JBrowse link
G Mab21l1 mab-21 like 1 acts_upstream_of_or_within ISO (PMID:12642482) MGI PMID:12642482 NCBI chrNW_004955431:10,570,656...10,573,618
Ensembl chrNW_004955431:10,571,712...10,572,791 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO (PMID:15385160) MGI PMID:15385160 NCBI chrNW_004955471:5,296,292...5,298,432
Ensembl chrNW_004955471:5,297,259...5,298,338 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO (PMID:12941696) MGI PMID:12941696 NCBI chrNW_004955446:11,022,091...11,090,136
Ensembl chrNW_004955446:11,021,971...11,090,136 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO (PMID:14500757) MGI PMID:14500757 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO (PMID:15576400) MGI PMID:15576400 NCBI chrNW_004955421:17,948,117...18,157,379
Ensembl chrNW_004955421:17,947,277...18,154,090 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO (PMID:21531335) MGI PMID:21531335 NCBI chrNW_004955542:579,183...584,617
Ensembl chrNW_004955542:579,356...584,508 		JBrowse link
G Mtnr1a melatonin receptor 1A ISO RGD PMID:12890503 RGD:9588674 NCBI chrNW_004955403:22,636,212...22,658,566
Ensembl chrNW_004955403:22,636,212...22,658,566 		JBrowse link
G Mtnr1b melatonin receptor 1B ISO RGD PMID:12890503 RGD:9588674 NCBI chrNW_004955414:1,394,709...1,406,990
Ensembl chrNW_004955414:1,394,923...1,407,217 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO (PMID:19531352) MGI PMID:19531352 NCBI chrNW_004955405:19,345,943...19,348,453
Ensembl chrNW_004955405:19,345,943...19,348,453 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO (PMID:11861467) MGI PMID:11861467 NCBI chrNW_004955403:15,595,888...15,600,040
Ensembl chrNW_004955403:15,595,888...15,600,040 		JBrowse link
G Neurod4 neuronal differentiation 4 acts_upstream_of_or_within ISO (PMID:11861467) MGI PMID:11861467 NCBI chrNW_004955458:2,138,849...2,146,636
Ensembl chrNW_004955458:2,138,849...2,146,636 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:18477394) MGI PMID:18477394 NCBI chrNW_004955415:32,055,926...32,121,611
Ensembl chrNW_004955415:32,055,375...32,117,833 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:15371513)
(PMID:16000615)		 MGI PMID:15371513 PMID:16000615 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376 		JBrowse link
G Pax2 paired box 2 acts_upstream_of_or_within ISO (PMID:12756174) MGI PMID:12756174 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:12183364)
(PMID:12648492), (PMID:16080917)
(PMID:12756174)
(PMID:11069887)
(PMID:11062307)
(PMID:12072567)		 MGI PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:25220058) MGI PMID:25220058 NCBI chrNW_004955407:42,735,078...42,835,851
Ensembl chrNW_004955407:42,735,188...42,835,465 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:9618168) BHF-UCL PMID:9618168 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 acts_upstream_of_or_within ISO (PMID:16847320) MGI PMID:16847320 NCBI chrNW_004955407:38,949,060...38,982,984
Ensembl chrNW_004955407:38,948,200...38,982,984 		JBrowse link
G Prss56 serine protease 56 involved_in
acts_upstream_of_or_within		 ISO (PMID:21397065)
(PMID:21532570)		 UniProt
MGI		 PMID:21397065 PMID:21532570 NCBI chrNW_004955453:3,440,871...3,446,090
Ensembl chrNW_004955453:3,441,109...3,446,090 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:20512159) BHF-UCL PMID:20512159 NCBI chrNW_004955440:2,551,015...2,645,938
Ensembl chrNW_004955440:2,550,982...2,646,331 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within ISO (PMID:11105055), (PMID:15789424)
(PMID:13970081), (PMID:17247120), (PMID:640224)		 MGI PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 NCBI chrNW_004955402:43,408,933...43,414,697
Ensembl chrNW_004955402:43,410,404...43,414,306 		JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO (PMID:19474196) MGI PMID:19474196 NCBI chrNW_004955476:10,280,669...10,289,668
Ensembl chrNW_004955476:10,280,669...10,289,799 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:9512345 RGD:633787 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904), (PMID:17558409) MGI PMID:17553904 PMID:17558409 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569 		JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO (PMID:9376317) MGI PMID:9376317 NCBI chrNW_004955513:3,313,544...3,386,544
Ensembl chrNW_004955513:3,335,897...3,386,994 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:12195432)
(PMID:18582859)
(PMID:16236765)
(PMID:12756179)		 MGI PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:12072567) MGI PMID:12072567 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:11731796) MGI PMID:11731796 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Slc25a25 solute carrier family 25 member 25 acts_upstream_of_or_within ISO (PMID:21296886) MGI PMID:21296886 NCBI chrNW_004955419:621,445...656,172
Ensembl chrNW_004955419:618,979...656,189 		JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:23543054) MGI PMID:23543054 NCBI chrNW_004955404:22,738,080...22,744,601
Ensembl chrNW_004955404:22,737,974...22,745,046 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:21901792) UniProt PMID:21901792 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Tbc1d20 TBC1 domain family member 20 acts_upstream_of_or_within ISO (PMID:14757819) MGI PMID:14757819 NCBI chrNW_004955597:291,541...313,799
Ensembl chrNW_004955597:291,541...314,292 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004955436:3,385,216...3,542,497
Ensembl chrNW_004955436:3,386,180...3,540,933 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO (PMID:22179047) MGI PMID:22179047 NCBI chrNW_004955484:2,011,000...2,027,763
Ensembl chrNW_004955484:2,011,000...2,027,763 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (PMID:21856951) MGI PMID:21856951 NCBI chrNW_004955414:15,166,349...15,178,284
Ensembl chrNW_004955414:15,166,349...15,178,284 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO (PMID:14681194) MGI PMID:14681194 NCBI chrNW_004955402:2,652,020...2,685,350
Ensembl chrNW_004955402:2,652,020...2,686,117 		JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO (PMID:15905411) MGI PMID:15905411 NCBI chrNW_004955431:21,853,636...21,857,547
Ensembl chrNW_004955431:21,853,636...21,857,547 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:15905411) MGI PMID:15905411 NCBI chrNW_004955424:14,283,336...14,309,809
Ensembl chrNW_004955424:14,283,327...14,309,809 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:15576400) MGI PMID:15576400 NCBI chrNW_004955523:1,192,035...1,207,949
Ensembl chrNW_004955523:1,193,686...1,210,641 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of_or_within ISO (PMID:11889045) MGI PMID:11889045 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH like homeobox 2 acts_upstream_of_or_within ISO (PMID:14998930) MGI PMID:14998930 NCBI chrNW_004955423:3,516,973...3,522,459
Ensembl chrNW_004955423:3,516,660...3,522,536 		JBrowse link
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within ISO (PMID:15363391) MGI PMID:15363391 NCBI chrNW_004955455:9,182,405...9,210,365
Ensembl chrNW_004955455:9,183,475...9,210,506 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of ISO (PMID:15976303) MGI PMID:15976303 NCBI chrNW_004955458:3,388,402...3,398,040
Ensembl chrNW_004955458:3,388,402...3,398,040 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO (PMID:16038893) MGI PMID:16038893 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955456:3,617,988...3,721,791
Ensembl chrNW_004955456:3,635,380...3,721,791 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISO (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chrNW_004955403:15,595,888...15,600,040
Ensembl chrNW_004955403:15,595,888...15,600,040 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO (MGI:2158684|PMID:11861467) UniProt PMID:11861467 MGI:2158684 NCBI chrNW_004955458:2,138,849...2,146,636
Ensembl chrNW_004955458:2,138,849...2,146,636 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 ISO (MGI:3691257|PMID:17075007)
(PMID:17301087)		 UniProt
MGI		 PMID:17075007 PMID:17301087 MGI:3691257 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) MGI PMID:18973577 NCBI chrNW_004955402:7,130,809...7,138,945
Ensembl chrNW_004955402:7,129,484...7,138,340 		JBrowse link
G Tgif2 TGFB induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) MGI PMID:18926818 NCBI chrNW_004955422:25,024,359...25,042,568
Ensembl chrNW_004955422:25,024,359...25,041,459 		JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within ISO (PMID:27687499) MGI PMID:27687499 NCBI chrNW_004955517:1,302,560...1,443,708
Ensembl chrNW_004955517:1,302,922...1,440,245 		JBrowse link
G Aqp1 aquaporin 1 (Colton blood group) acts_upstream_of_or_within ISO (PMID:11891232) MGI PMID:11891232 NCBI chrNW_004955410:32,066,196...32,078,661
Ensembl chrNW_004955410:32,066,196...32,078,717 		JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO (PMID:11891232) MGI PMID:11891232 NCBI chrNW_004955547:558,296...562,455
Ensembl chrNW_004955547:558,927...564,376 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:16854970)
(PMID:16154126)		 MGI PMID:16154126 PMID:16854970 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO (PMID:16051690) MGI PMID:16051690 NCBI chrNW_004955427:1,187,550...1,335,794
Ensembl chrNW_004955427:1,187,550...1,335,794 		JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO (PMID:16051690) MGI PMID:16051690 NCBI chrNW_004955452:14,127,654...14,149,582
Ensembl chrNW_004955452:14,127,630...14,155,212 		JBrowse link
G Ephb1 EPH receptor B1 acts_upstream_of_or_within ISO (PMID:12971893) MGI PMID:12971893 NCBI chrNW_004955501:3,424,112...3,821,727
Ensembl chrNW_004955501:3,423,977...3,821,890 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_or_within ISO (PMID:12971893) MGI PMID:12971893 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO (PMID:26114487) MGI PMID:26114487 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:15976303) MGI PMID:15976303 NCBI chrNW_004955458:3,388,402...3,398,040
Ensembl chrNW_004955458:3,388,402...3,398,040 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:8387379) MGI PMID:8387379 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G LOC102009926 chromosome unknown open reading frame, human C12orf57 involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) UniProt PMID:23453665 PMID:23633300 PMID:24798461 NCBI chrNW_004955413:4,524,236...4,525,760
Ensembl chrNW_004955413:4,524,236...4,525,760 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:16104381) MGI PMID:16104381 NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955412:20,683,007...20,745,069
Ensembl chrNW_004955412:20,682,861...20,745,069 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:7926784) MGI PMID:7926784 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO (PMID:16624538) MGI PMID:16624538 NCBI chrNW_004955437:1,782,156...1,785,811
Ensembl chrNW_004955437:1,782,115...1,788,842 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:17003410) MGI PMID:17003410 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) UniProt PMID:22766609 NCBI chrNW_004955403:25,920,919...26,534,817
Ensembl chrNW_004955403:25,923,750...26,365,894 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:16251428) MGI PMID:16251428 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (PMID:16624538) MGI PMID:16624538 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in ISO (PMID:18654668)
(MGI:3838023|PMID:19228982)		 BHF-UCL
UniProt		 PMID:18654668 PMID:19228982 MGI:3838023 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:23676271) MGI PMID:23676271 NCBI chrNW_004955415:20,490,414...20,526,068
Ensembl chrNW_004955415:20,490,414...20,527,917 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:23676271) MGI PMID:23676271 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (PMID:21856951) MGI PMID:21856951 NCBI chrNW_004955414:15,166,349...15,178,284
Ensembl chrNW_004955414:15,166,349...15,178,284 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004955452:7,505,647...7,593,302
Ensembl chrNW_004955452:7,532,966...7,596,546 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:29518352)
(PMID:23580486)		 MGI PMID:23580486 PMID:29518352 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:26607664) MGI PMID:26607664 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within ISO (PMID:27687499) MGI PMID:27687499 NCBI chrNW_004955517:1,302,560...1,443,708
Ensembl chrNW_004955517:1,302,922...1,440,245 		JBrowse link
G Kera keratocan acts_upstream_of_or_within ISO (PMID:10802664) MGI PMID:10802664 NCBI chrNW_004955405:28,256,054...28,263,559
Ensembl chrNW_004955405:28,256,001...28,263,600 		JBrowse link
G Limk2 LIM domain kinase 2 acts_upstream_of_or_within ISO (PMID:26234751) MGI PMID:26234751 NCBI chrNW_004955455:5,406,085...5,473,418
Ensembl chrNW_004955455:5,405,940...5,473,418 		JBrowse link
G Pax6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:29450535) MGI PMID:29450535 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:16186342) MGI PMID:16186342 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:20574024) MGI PMID:20574024 NCBI chrNW_004955542:1,959,765...2,000,665
Ensembl chrNW_004955542:1,959,765...2,000,665 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:17184764) MGI PMID:17184764 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3042765|PMID:14623956)
(PMID:17184764)		 UniProt
MGI		 PMID:14623956 PMID:17184764 MGI:3042765 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (PMID:15958512) MGI PMID:15958512 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:18791178) MGI PMID:18791178 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:23469164) MGI PMID:23469164 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:10498698)
(PMID:10572050)		 MGI PMID:10498698 PMID:10572050 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Ppp1r13l protein phosphatase 1 regulatory subunit 13 like acts_upstream_of_or_within ISO (PMID:15661756) MGI PMID:15661756 NCBI chrNW_004955555:2,373,088...2,390,973
Ensembl chrNW_004955555:2,372,259...2,389,626 		JBrowse link
G Rara retinoic acid receptor alpha acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:7607067) MGI PMID:7607067 NCBI chrNW_004955458:480,257...501,172
Ensembl chrNW_004955458:480,070...501,356 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004955542:2,264,472...2,301,083
Ensembl chrNW_004955542:2,265,901...2,301,215 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22228095) MGI PMID:22228095 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999) MGI PMID:18056999 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738)
(PMID:19653321)		 MGI PMID:18985738 PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004955458:644,435...677,360
Ensembl chrNW_004955458:644,378...677,441 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004955449:1,347,781...1,404,368 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:18436818) MGI PMID:18436818 NCBI chrNW_004955429:23,011,627...23,198,188
Ensembl chrNW_004955429:23,010,790...23,198,250 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:19754878) MGI PMID:19754878 NCBI chrNW_004955412:27,004,391...27,093,968
Ensembl chrNW_004955412:27,003,919...27,065,989 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:12692551)
(MGI:2658694|PMID:12692551)		 BHF-UCL PMID:12692551 MGI:2658694 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO (PMID:26114487) MGI PMID:26114487 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211 		JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO (PMID:14618389) MGI PMID:14618389 NCBI chrNW_004955406:37,201,180...37,263,328
Ensembl chrNW_004955406:37,201,180...37,263,371 		JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) UniProt PMID:12630957 NCBI chrNW_004955501:83,965...84,476 JBrowse link
G Myh15 myosin heavy chain 15 ISO RGD PMID:19948655 RGD:2317122 NCBI chrNW_004955427:9,257,716...9,400,526
Ensembl chrNW_004955427:9,259,811...9,400,526 		JBrowse link
G Myom1 myomesin 1 ISO RGD PMID:12878677 RGD:633368 NCBI chrNW_004955402:7,293,415...7,418,226
Ensembl chrNW_004955402:7,297,502...7,417,583 		JBrowse link
G Myom2 myomesin 2 ISO RGD PMID:12878677 RGD:633368 NCBI chrNW_004955403:57,718,120...57,783,338
Ensembl chrNW_004955403:57,717,151...57,772,254 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:16638982)
(PMID:21035439)		 MGI PMID:16638982 PMID:21035439 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO (PMID:9030684) MGI PMID:9030684 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (PMID:21262862) MGI PMID:21262862 NCBI chrNW_004955452:4,125,792...4,159,699
Ensembl chrNW_004955452:4,128,269...4,160,683 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO (MGI:4889029|PMID:21093383) BHF-UCL PMID:21093383 MGI:4889029 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (MGI:2682175|PMID:14551263) UniProt PMID:14551263 MGI:2682175 NCBI chrNW_004955460:2,054,879...2,066,628
Ensembl chrNW_004955460:2,046,588...2,066,609 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (PMID:25224220) MGI PMID:25224220 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Kmt2c lysine methyltransferase 2C acts_upstream_of_or_within ISO (PMID:17021013) MGI PMID:17021013 NCBI chrNW_004955491:6,245,408...6,420,535
Ensembl chrNW_004955491:6,247,249...6,402,470 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO (PMID:23201579), (PMID:25224220) MGI PMID:23201579 PMID:25224220 NCBI chrNW_004955446:11,022,091...11,090,136
Ensembl chrNW_004955446:11,021,971...11,090,136 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:3848564|PMID:19389375) UniProt PMID:19389375 MGI:3848564 NCBI chrNW_004955417:14,502,450...14,510,015
Ensembl chrNW_004955417:14,502,451...14,510,160 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:29450535) MGI PMID:29450535 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO (PMID:9030684) MGI PMID:9030684 NCBI chrNW_004955441:6,649,895...6,724,271
Ensembl chrNW_004955441:6,646,385...6,713,028 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:20047077) MGI PMID:20047077 NCBI chrNW_004955437:9,100,546...9,109,305
Ensembl chrNW_004955437:9,098,968...9,107,057 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:1313057|PMID:9811866) UniProt PMID:9811866 MGI:1313057 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955412:15,054,255...15,114,558
Ensembl chrNW_004955412:15,054,038...15,114,573 		JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472 		JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within ISO (PMID:19557008) MGI PMID:19557008 NCBI chrNW_004955515:4,892,748...4,905,627
Ensembl chrNW_004955515:4,892,039...4,907,323 		JBrowse link
G Opn4 opsin 4 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135 		JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955437:12,171,544...12,197,409
Ensembl chrNW_004955437:12,171,544...12,213,264 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955476:2,813,368...2,854,371
Ensembl chrNW_004955476:2,813,368...2,854,514 		JBrowse link
G Slc6a3 solute carrier family 6 member 3 involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955504:721,470...747,553
Ensembl chrNW_004955504:721,429...747,630 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:6359287|PMID:30936473) UniProt PMID:30936473 MGI:6359287 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Pax6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:9437321) BHF-UCL PMID:9437321 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within ISO (PMID:27687499) MGI PMID:27687499 NCBI chrNW_004955517:1,302,560...1,443,708
Ensembl chrNW_004955517:1,302,922...1,440,245 		JBrowse link
G Birc7 baculoviral IAP repeat containing 7 acts_upstream_of_or_within ISO (PMID:26218911) MGI PMID:26218911 NCBI chrNW_004955528:919,246...922,581
Ensembl chrNW_004955528:919,246...922,619 		JBrowse link
G Casp6 caspase 6 ISO RGD PMID:15161922 RGD:2301319 NCBI chrNW_004955496:575,839...584,287
Ensembl chrNW_004955496:577,832...584,287 		JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO RGD PMID:10620399 RGD:724665 NCBI chrNW_004955458:3,555,603...3,561,063
Ensembl chrNW_004955458:3,555,603...3,562,120 		JBrowse link
G Cdk4 cyclin dependent kinase 4 ISO RGD PMID:10620399 RGD:724665 NCBI chrNW_004955458:5,457,927...5,460,718
Ensembl chrNW_004955458:5,453,732...5,460,718 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:19754878) MGI PMID:19754878 NCBI chrNW_004955412:27,004,391...27,093,968
Ensembl chrNW_004955412:27,003,919...27,065,989 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:16439475), (PMID:9023351)
(PMID:11687536)		 RGD
MGI		 PMID:8187157 PMID:9023351 PMID:11687536 PMID:16439475 RGD:1600991 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Cryab crystallin alpha B acts_upstream_of_or_within ISO (PMID:16439475) MGI PMID:16439475 NCBI chrNW_004955412:13,626,018...13,629,495
Ensembl chrNW_004955412:13,625,363...13,640,426 		JBrowse link
G Cryba1 crystallin beta A1 ISO RGD PMID:2753045 RGD:1298814 NCBI chrNW_004955481:3,952,976...3,986,548
Ensembl chrNW_004955481:3,952,988...3,959,764 		JBrowse link
G Cryba2 crystallin beta A2 acts_upstream_of_or_within ISO (PMID:21212184) MGI PMID:21212184 NCBI chrNW_004955453:14,438,658...14,444,469
Ensembl chrNW_004955453:14,441,007...14,444,497 		JBrowse link
G Crygs crystallin gamma S acts_upstream_of_or_within ISO (PMID:6877261), (PMID:8034315) MGI PMID:6877261 PMID:8034315 NCBI chrNW_004955420:21,137,964...21,144,206
Ensembl chrNW_004955420:21,137,964...21,144,206 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter acts_upstream_of_or_within ISO (PMID:21897743) MGI PMID:21897743 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO (PMID:14645510) MGI PMID:14645510 NCBI chrNW_004955420:13,068,289...13,273,805
Ensembl chrNW_004955420:13,068,289...13,273,805 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO (PMID:26114487) MGI PMID:26114487 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (PMID:23136392) MGI PMID:23136392 NCBI chrNW_004955405:9,785,857...9,884,220
Ensembl chrNW_004955405:9,843,925...9,884,220 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO (PMID:19623612) MGI PMID:19623612 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:9620080) MGI PMID:9620080 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095 		JBrowse link
G Gja8 gap junction protein alpha 8 acts_upstream_of_or_within ISO (PMID:6877261) MGI PMID:6877261 NCBI chrNW_004955568:514,905...516,551
Ensembl chrNW_004955568:515,113...516,435 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8812411) MGI PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 NCBI chrNW_004955558:1,019,709...1,024,375
Ensembl chrNW_004955558:1,019,244...1,024,375 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO (PMID:10383433)
(PMID:12835653)
(PMID:10603348)		 MGI PMID:10383433 PMID:10603348 PMID:12835653 NCBI chrNW_004955522:2,514,313...2,519,694 JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Mip major intrinsic protein of lens fiber acts_upstream_of_or_within ISO (PMID:7333462) MGI PMID:7333462 NCBI chrNW_004955458:4,030,619...4,035,656
Ensembl chrNW_004955458:4,030,619...4,035,656 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:15716406) MGI PMID:15716406 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nhs NHS actin remodeling regulator acts_upstream_of_or_within ISO (PMID:8282045) MGI PMID:8282045 NCBI chrNW_004955519:596,216...919,352
Ensembl chrNW_004955519:599,682...918,762 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:6877261) MGI PMID:6877261 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (PMID:19412548) MGI PMID:19412548 NCBI chrNW_004955443:7,475,434...7,603,548
Ensembl chrNW_004955443:7,475,385...7,604,714 		JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within ISO (PMID:19412548) MGI PMID:19412548 NCBI chrNW_004955431:13,083,229...13,268,680
Ensembl chrNW_004955431:13,078,726...13,197,482 		JBrowse link
G Pitx3 paired like homeodomain 3 involved_in ISO (MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279) UniProt PMID:19007884 PMID:19334279 MGI:3831639 MGI:4353482 NCBI chrNW_004955485:8,130,244...8,140,292
Ensembl chrNW_004955485:8,130,244...8,140,292 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:8812486) BHF-UCL PMID:8812486 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:1929788|PMID:11139622) UniProt PMID:11139622 MGI:1929788 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Six5 SIX homeobox 5 acts_upstream_of_or_within ISO (PMID:10802667)
(PMID:10802668)		 MGI PMID:10802667 PMID:10802668 NCBI chrNW_004955574:221,635...225,474
Ensembl chrNW_004955574:222,292...225,401 		JBrowse link
G Slitrk6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:23543054) MGI PMID:23543054 NCBI chrNW_004955404:22,738,080...22,744,601
Ensembl chrNW_004955404:22,737,974...22,745,046 		JBrowse link
G Tbc1d20 TBC1 domain family member 20 acts_upstream_of_or_within ISO (PMID:24239381) MGI PMID:24239381 NCBI chrNW_004955597:291,541...313,799
Ensembl chrNW_004955597:291,541...314,292 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004955436:3,385,216...3,542,497
Ensembl chrNW_004955436:3,386,180...3,540,933 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:11641223) MGI PMID:11641223 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 acts_upstream_of_or_within ISO (PMID:11641223) MGI PMID:11641223 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837 		JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 acts_upstream_of_or_within ISO (PMID:15037121) MGI PMID:15037121 NCBI chrNW_004955415:26,507,381...26,535,545
Ensembl chrNW_004955415:26,507,528...26,535,551 		JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO (PMID:15037121), (PMID:17065509) MGI PMID:15037121 PMID:17065509 NCBI chrNW_004955501:5,083,456...5,145,256
Ensembl chrNW_004955501:5,083,456...5,145,256 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:23136392)
(PMID:18455718)		 MGI PMID:18455718 PMID:23136392 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:18455718) MGI PMID:18455718 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (PMID:23136392) MGI PMID:23136392 NCBI chrNW_004955405:9,785,857...9,884,220
Ensembl chrNW_004955405:9,843,925...9,884,220 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (PMID:21118511) MGI PMID:21118511 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Tmod1 tropomodulin 1 involved_in ISO (MGI:5475090|PMID:23144950) CACAO PMID:23144950 MGI:5475090 NCBI chrNW_004955419:27,841,424...27,915,540
Ensembl chrNW_004955419:27,841,424...27,915,540 		JBrowse link
G Vim vimentin acts_upstream_of_or_within ISO (PMID:15037121) MGI PMID:15037121 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554 		JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within ISO (PMID:17215516) MGI PMID:17215516 NCBI chrNW_004955495:5,481,914...5,503,690
Ensembl chrNW_004955495:5,481,916...5,505,521 		JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:24142921 RGD:9587771 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO (PMID:12835653)
(PMID:10383433)		 MGI PMID:10383433 PMID:12835653 NCBI chrNW_004955522:2,514,313...2,519,694 JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in ISO (MGI:4457460|PMID:20181838) UniProt PMID:20181838 MGI:4457460 NCBI chrNW_004955455:3,862,804...3,950,669
Ensembl chrNW_004955455:3,862,347...3,951,891 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 acts_upstream_of_or_within ISO (PMID:23136392) MGI PMID:23136392 NCBI chrNW_004955416:16,652,931...17,018,188
Ensembl chrNW_004955416:16,652,791...17,018,188 		JBrowse link
G Pitx3 paired like homeodomain 3 involved_in ISO (MGI:3831639|PMID:19007884) UniProt PMID:19007884 MGI:3831639 NCBI chrNW_004955485:8,130,244...8,140,292
Ensembl chrNW_004955485:8,130,244...8,140,292 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:2181466|PMID:12072567) UniProt PMID:12072567 MGI:2181466 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Skil SKI like proto-oncogene acts_upstream_of_or_within ISO (PMID:17215516) MGI PMID:17215516 NCBI chrNW_004955420:530,531...554,308
Ensembl chrNW_004955420:530,528...554,551 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 ISO RGD PMID:16043861 RGD:2315033 NCBI chrNW_004955428:5,238,460...5,309,085
Ensembl chrNW_004955428:5,237,865...5,309,085 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:17215516) MGI PMID:17215516 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO (PMID:21436445)
(MGI:4943339|PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chrNW_004955419:27,919,664...27,983,426
Ensembl chrNW_004955419:27,916,011...27,976,163 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (PMID:17215516) MGI PMID:17215516 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chrNW_004955457:11,451,851...11,562,692
Ensembl chrNW_004955457:11,451,851...11,562,696 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISO (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chrNW_004955413:25,406,589...25,408,727
Ensembl chrNW_004955413:25,406,589...25,412,218 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999)
(PMID:16799046)		 MGI PMID:16799046 PMID:18056999 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Epha2 EPH receptor A2 involved_in ISO (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chrNW_004955527:2,120,447...2,151,932
Ensembl chrNW_004955527:2,120,266...2,152,781 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11850194)
(MGI:1332720|PMID:10080188)		 BHF-UCL PMID:10080188 PMID:11850194 MGI:1332720 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Tbc1d20 TBC1 domain family member 20 acts_upstream_of_or_within ISO (PMID:24239381) MGI PMID:24239381 NCBI chrNW_004955597:291,541...313,799
Ensembl chrNW_004955597:291,541...314,292 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9851982) MGI PMID:9851982 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO (PMID:17140559) MGI PMID:17140559 NCBI chrNW_004955462:9,545,122...9,710,190
Ensembl chrNW_004955462:9,553,415...9,710,188 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:17066077) MGI PMID:17066077 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:17140559) MGI PMID:17140559 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:10571739) MGI PMID:10571739 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO (PMID:19365570) MGI PMID:19365570 NCBI chrNW_004955423:991,046...1,105,033
Ensembl chrNW_004955423:991,057...1,105,033 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:16799046)
(PMID:8812430)		 MGI PMID:8812430 PMID:16799046 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:16102745) MGI PMID:16102745 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:11290300) MGI PMID:11290300 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590 		JBrowse link
G Lctl lactase like involved_in ISO (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chrNW_004955450:9,127,151...9,139,836
Ensembl chrNW_004955450:9,127,174...9,139,211 		JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within ISO (PMID:14713950) MGI PMID:14713950 NCBI chrNW_004955424:18,060,499...18,190,425
Ensembl chrNW_004955424:18,058,004...18,190,453 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955412:20,683,007...20,745,069
Ensembl chrNW_004955412:20,682,861...20,745,069 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955427:11,639,942...11,731,910
Ensembl chrNW_004955427:11,606,909...11,724,004 		JBrowse link
G Pitx3 paired like homeodomain 3 involved_in ISO (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chrNW_004955485:8,130,244...8,140,292
Ensembl chrNW_004955485:8,130,244...8,140,292 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:17003410) MGI PMID:17003410 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO (PMID:21436445)
(MGI:4943339|PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chrNW_004955419:27,919,664...27,983,426
Ensembl chrNW_004955419:27,916,011...27,976,163 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:18224708), (PMID:9918694) MGI PMID:9918694 PMID:18224708 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (PMID:15569927) MGI PMID:15569927 NCBI chrNW_004955405:9,785,857...9,884,220
Ensembl chrNW_004955405:9,843,925...9,884,220 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:3836138|PMID:11850194) BHF-UCL PMID:11850194 MGI:3836138 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:15976303) MGI PMID:15976303 NCBI chrNW_004955458:3,388,402...3,398,040
Ensembl chrNW_004955458:3,388,402...3,398,040 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:16038893) MGI PMID:16038893 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004955428:2,325,775...2,329,122
Ensembl chrNW_004955428:2,324,834...2,329,205 		JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spred1 sprouty related EVH1 domain containing 1 involved_in ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004955416:5,288,779...5,376,861
Ensembl chrNW_004955416:5,288,262...5,377,036 		JBrowse link
G Spred2 sprouty related EVH1 domain containing 2 involved_in ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004955424:19,133,568...19,250,118
Ensembl chrNW_004955424:19,133,568...19,250,118 		JBrowse link
G Spred3 sprouty related EVH1 domain containing 3 involved_in ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004955468:1,030,964...1,039,495
Ensembl chrNW_004955468:1,028,470...1,039,495 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004955428:17,451,703...17,455,695
Ensembl chrNW_004955428:17,451,703...17,455,695 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in ISO (MGI:6414698|PMID:29501879) UniProt PMID:29501879 MGI:6414698 NCBI chrNW_004955404:27,349,286...27,353,706
Ensembl chrNW_004955404:27,349,519...27,353,706 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 involved_in ISO (PMID:25622036) UniProt PMID:25622036 NCBI chrNW_004955486:2,539,781...2,545,630
Ensembl chrNW_004955486:2,539,781...2,545,630 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chrNW_004955420:8,745,390...8,764,993
Ensembl chrNW_004955420:8,744,597...8,764,993 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:21441919) MGI PMID:21441919 NCBI chrNW_004955425:20,559,466...20,560,275 JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004955405:26,872,379...26,932,270
Ensembl chrNW_004955405:26,872,379...26,932,703 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004955561:1,727,935...1,851,907
Ensembl chrNW_004955561:1,727,935...1,851,907 		JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004955580:286,092...332,657
Ensembl chrNW_004955580:269,100...333,471 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:16079002 RGD:2317729 NCBI chrNW_004955406:39,552,034...39,645,694
Ensembl chrNW_004955406:39,552,019...39,645,694 		JBrowse link
G Bsg basigin (Ok blood group) involved_in ISO (MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760) UniProt PMID:10967074 PMID:11273674 PMID:11853760 MGI:1888850 MGI:1932603 MGI:3610672 NCBI chrNW_004955495:7,148,806...7,156,296 JBrowse link
G Casp2 caspase 2 ISO RGD PMID:9809666 RGD:4107085 NCBI chrNW_004955494:353,572...369,207
Ensembl chrNW_004955494:353,310...368,873 		JBrowse link
G Gpm6a glycoprotein M6A involved_in ISO (MGI:3811956|PMID:18776950) UniProt PMID:18776950 MGI:3811956 NCBI chrNW_004955403:31,704,540...31,997,382
Ensembl chrNW_004955403:31,861,945...31,997,382 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:15716406) MGI PMID:15716406 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Optn optineurin ISO RGD PMID:17687037 RGD:7800681 NCBI chrNW_004955462:1,098,118...1,150,291
Ensembl chrNW_004955462:1,107,510...1,151,269 		JBrowse link
G Psen1 presenilin 1 ISO RGD PMID:12401445 RGD:729595 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:2631392 RGD:9585660 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 ISO RGD PMID:18482716 RGD:9999162 NCBI chrNW_004955476:2,813,368...2,854,371
Ensembl chrNW_004955476:2,813,368...2,854,514 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 ISO RGD PMID:18482716 RGD:9999162 NCBI chrNW_004955559:1,399,182...1,409,074
Ensembl chrNW_004955559:1,399,182...1,409,134 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 ISO RGD PMID:18482716 RGD:9999162 NCBI chrNW_004955405:36,063,688...36,115,312
Ensembl chrNW_004955405:36,063,688...36,115,312 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:18816825) BHF-UCL PMID:18816825 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in ISO (PMID:18816825)
(MGI:3809321|PMID:18816825)		 BHF-UCL PMID:18816825 MGI:3809321 NCBI chrNW_004955491:5,653,284...5,657,546
Ensembl chrNW_004955491:5,651,597...5,657,554 		JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:894212|PMID:9217007) BHF-UCL PMID:9217007 MGI:894212 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (PMID:16611695) MGI PMID:16611695 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004955449:2,920,705...2,924,667
Ensembl chrNW_004955449:2,920,478...2,924,667 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISO (MGI:5316576|PMID:21875655) UniProt PMID:21875655 MGI:5316576 NCBI chrNW_004955449:2,907,502...2,909,893
Ensembl chrNW_004955449:2,907,436...2,910,816 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) MGI PMID:18973577 NCBI chrNW_004955402:7,130,809...7,138,945
Ensembl chrNW_004955402:7,129,484...7,138,340 		JBrowse link
G Tgif2 TGFB induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) MGI PMID:18926818 NCBI chrNW_004955422:25,024,359...25,042,568
Ensembl chrNW_004955422:25,024,359...25,041,459 		JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:29501879) UniProt PMID:29501879 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:3604916|PMID:16162653) UniProt PMID:16162653 MGI:3604916 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491 		JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO (PMID:12717433) MGI PMID:12717433 NCBI chrNW_004955438:20,562,345...20,637,662
Ensembl chrNW_004955438:20,564,449...20,637,103 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within		 ISO (MGI:3826935|PMID:18832390)
(PMID:18791178)		 CACAO
MGI		 PMID:18791178 PMID:18832390 MGI:3826935 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO (PMID:17060454) MGI PMID:17060454 NCBI chrNW_004955419:19,280,311...19,284,097
Ensembl chrNW_004955419:19,280,235...19,285,174 		JBrowse link
G Muc4 mucin 4, cell surface associated ISO RGD PMID:11120573 RGD:2303744 NCBI chrNW_004955420:12,228,801...12,274,840 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:10229225) MGI PMID:10229225 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2 antagonist/killer 1 acts_upstream_of_or_within ISO (PMID:15955981) MGI PMID:15955981 NCBI chrNW_004955437:2,036,415...2,041,997
Ensembl chrNW_004955437:2,036,415...2,041,997 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15955981) MGI PMID:15955981 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244 		JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (PMID:22426483) MGI PMID:22426483 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:16466397) MGI PMID:16466397 NCBI chrNW_004955407:38,136,386...38,142,587
Ensembl chrNW_004955407:38,136,386...38,143,479 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO (PMID:22426483) MGI PMID:22426483 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:15316081), (PMID:16885194)
(PMID:12915475)		 MGI PMID:12915475 PMID:15316081 PMID:16885194 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within ISO (PMID:18216855) MGI PMID:18216855 NCBI chrNW_004955407:39,985,501...40,473,330
Ensembl chrNW_004955407:39,986,108...40,473,200 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683 		JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin dependent kinase inhibitor 1B acts_upstream_of_or_within ISO (PMID:9784491) MGI PMID:9784491 NCBI chrNW_004955413:9,615,542...9,620,542
Ensembl chrNW_004955413:9,615,542...9,620,542 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C acts_upstream_of_or_within ISO (PMID:9784491) MGI PMID:9784491 NCBI chrNW_004955422:14,576,971...14,578,868 JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in ISO (MGI:5314555|PMID:22323600) UniProt PMID:22323600 MGI:5314555 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:4837018|PMID:20890044) UniProt PMID:20890044 MGI:4837018 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:23932931) MGI PMID:23932931 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase (Cartwright blood group) acts_upstream_of_or_within ISO (PMID:15579149) MGI PMID:15579149 NCBI chrNW_004955573:79,606...85,799
Ensembl chrNW_004955573:80,298...85,799 		JBrowse link
G Actb actin beta ISO RGD PMID:22916200 RGD:9587758 NCBI chrNW_004955460:10,358,100...10,361,585
Ensembl chrNW_004955460:10,356,699...10,361,585 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO (PMID:20592197) MGI PMID:20592197 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:31302159) MGI PMID:31302159 NCBI chrNW_004955424:12,130,496...12,258,684
Ensembl chrNW_004955424:12,130,607...12,258,522 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:10982921) MGI PMID:10982921 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within ISO (PMID:26975023) MGI PMID:26975023 NCBI chrNW_004955478:4,326,669...4,475,559
Ensembl chrNW_004955478:4,341,826...4,434,542 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:9699561) MGI PMID:9699561 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:31302159) MGI PMID:31302159 NCBI chrNW_004955422:18,825,756...18,843,820
Ensembl chrNW_004955422:18,825,756...18,844,036 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:31302159), (PMID:36700052) MGI PMID:31302159 PMID:36700052 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO RGD PMID:17069773 RGD:2289001 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:12654290) MGI PMID:12654290 NCBI chrNW_004955405:5,408,171...5,784,930
Ensembl chrNW_004955405:5,700,162...5,787,957 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO RGD PMID:10482474 RGD:5129487 NCBI chrNW_004955457:12,235,780...12,315,680
Ensembl chrNW_004955457:12,235,780...12,316,727 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:28057640) MGI PMID:28057640 NCBI chrNW_004955495:2,796,601...2,824,233
Ensembl chrNW_004955495:2,796,663...2,824,697 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955543:692,035...717,364
Ensembl chrNW_004955543:692,035...717,364 		JBrowse link
G Calb1 calbindin 1 involved_in ISO (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chrNW_004955417:6,944,300...6,969,341
Ensembl chrNW_004955417:6,942,900...6,969,502 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:21052544), (PMID:31302159) MGI PMID:21052544 PMID:31302159 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within ISO (PMID:28057640) MGI PMID:28057640 NCBI chrNW_004955495:6,955,612...6,961,317 JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) BHF-UCL PMID:15300250 NCBI chrNW_004955444:17,859,999...18,067,623
Ensembl chrNW_004955444:17,858,771...18,067,248 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955420:23,138,558...23,152,462
Ensembl chrNW_004955420:23,138,605...23,152,311 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (PMID:15565184)
(PMID:21052544)		 MGI PMID:15565184 PMID:21052544 NCBI chrNW_004955403:57,926,711...57,938,698
Ensembl chrNW_004955403:57,924,873...57,938,690 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21124780) MGI PMID:21124780 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:22447858), (PMID:25147295) MGI PMID:22447858 PMID:25147295 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955574:1,544,917...1,548,912
Ensembl chrNW_004955574:1,544,917...1,548,912 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 acts_upstream_of_or_within ISO (PMID:37691820) MGI PMID:37691820 NCBI chrNW_004955435:14,664,292...14,704,198
Ensembl chrNW_004955435:14,664,292...14,704,194 		JBrowse link
G Drd4 dopamine receptor D4 ISO RGD PMID:18778704 RGD:7175073 NCBI chrNW_004955476:11,424,347...11,426,962
Ensembl chrNW_004955476:11,424,411...11,426,960 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO RGD PMID:23954924 RGD:11251759 NCBI chrNW_004955590:276,143...382,812
Ensembl chrNW_004955590:281,704...386,189 		JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO RGD PMID:16650834 RGD:2324945 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:21124780)
(PMID:21052544)		 MGI PMID:21052544 PMID:21124780 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnb1 G protein subunit beta 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955486:9,165,850...9,192,306
Ensembl chrNW_004955486:9,165,850...9,193,066 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955408:1,421,132...1,432,010
Ensembl chrNW_004955408:1,421,132...1,433,622 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (PMID:28728022) MGI PMID:28728022 NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377 		JBrowse link
G Hpca hippocalcin ISO RGD PMID:7789406 RGD:9686441 NCBI chrNW_004955452:11,142,282...11,150,798
Ensembl chrNW_004955452:11,140,373...11,154,261 		JBrowse link
G Hps1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955507:4,408,428...4,433,219
Ensembl chrNW_004955507:4,409,035...4,429,348 		JBrowse link
G Il4 interleukin 4 ISO RGD PMID:23070471 RGD:7829830 NCBI chrNW_004955408:4,058,052...4,065,999 JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chrNW_004955479:9,388,241...9,406,717
Ensembl chrNW_004955479:9,388,108...9,406,764 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chrNW_004955532:1,047,138...1,051,980
Ensembl chrNW_004955532:1,045,833...1,051,978 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO (PMID:15345036) MGI PMID:15345036 NCBI chrNW_004955506:5,577,735...5,588,307
Ensembl chrNW_004955506:5,577,437...5,588,372 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO (PMID:19907020) MGI PMID:19907020 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455 		JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO (PMID:19907020) MGI PMID:19907020 NCBI chrNW_004955513:872,301...934,234
Ensembl chrNW_004955513:881,092...934,458 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chrNW_004955405:41,891,430...42,225,066
Ensembl chrNW_004955405:41,931,058...42,139,608 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:19146846) MGI PMID:19146846 NCBI chrNW_004955419:3,999,364...4,019,543
Ensembl chrNW_004955419:3,998,242...4,018,875 		JBrowse link
G Lif LIF interleukin 6 family cytokine ISO RGD PMID:16643897 RGD:2326157 NCBI chrNW_004955455:4,489,515...4,505,439
Ensembl chrNW_004955455:4,489,421...4,497,940 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955504:760,941...791,996
Ensembl chrNW_004955504:758,881...791,996 		JBrowse link
G Max MYC associated factor X ISO RGD PMID:14603520 RGD:2316820 NCBI chrNW_004955466:4,816,568...4,842,659
Ensembl chrNW_004955466:4,816,568...4,842,659 		JBrowse link
G Mdm1 Mdm1 nuclear protein acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955458:14,789,842...14,823,117
Ensembl chrNW_004955458:14,780,437...14,822,954 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955470:2,065,468...2,167,909
Ensembl chrNW_004955470:2,065,411...2,167,909 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955412:20,421,935...20,426,760
Ensembl chrNW_004955412:20,421,935...20,426,760 		JBrowse link
G Musk muscle associated receptor tyrosine kinase ISO RGD PMID:16899069 RGD:2317091 NCBI chrNW_004955419:16,387,770...16,484,266
Ensembl chrNW_004955419:16,387,770...16,484,266 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO (PMID:11283949), (PMID:9356462) MGI PMID:9356462 PMID:11283949 NCBI chrNW_004955467:8,298,514...8,427,459
Ensembl chrNW_004955467:8,298,527...8,427,459 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:26607664) MGI PMID:26607664 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955412:20,683,007...20,745,069
Ensembl chrNW_004955412:20,682,861...20,745,069 		JBrowse link
G Neurod4 neuronal differentiation 4 ISO RGD PMID:15345241 RGD:2311603 NCBI chrNW_004955458:2,138,849...2,146,636
Ensembl chrNW_004955458:2,138,849...2,146,636 		JBrowse link
G Nfia nuclear factor I A acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chrNW_004955423:27,799,976...28,108,307
Ensembl chrNW_004955423:27,806,873...28,112,268 		JBrowse link
G Nfib nuclear factor I B acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chrNW_004955434:17,192,188...17,603,503
Ensembl chrNW_004955434:17,198,571...17,415,084 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO (PMID:31128945) MGI PMID:31128945 NCBI chrNW_004955415:32,055,926...32,121,611
Ensembl chrNW_004955415:32,055,375...32,117,833 		JBrowse link
G Nos3 nitric oxide synthase 3 ISO RGD PMID:16639026 RGD:7771562 NCBI chrNW_004955491:5,438,228...5,457,308
Ensembl chrNW_004955491:5,438,010...5,460,814 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:11997145)
(PMID:16702404)		 MGI PMID:11997145 PMID:16702404 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 acts_upstream_of_or_within ISO (PMID:12407160)
(PMID:21052544)		 MGI PMID:12407160 PMID:21052544 NCBI chrNW_004955450:5,281,707...5,286,260
Ensembl chrNW_004955450:5,281,707...5,286,260 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 ISO RGD PMID:22714110 RGD:124713571 NCBI chrNW_004955449:16,928,780...16,944,536
Ensembl chrNW_004955449:16,937,794...16,945,731 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:25542970) MGI PMID:25542970 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878 		JBrowse link
G Opa1 OPA1 mitochondrial dynamin like GTPase ISO RGD PMID:15505078 RGD:1547836 NCBI chrNW_004955420:14,927,490...15,007,082
Ensembl chrNW_004955420:14,923,575...15,007,081 		JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO (PMID:21124780) MGI PMID:21124780 NCBI chrNW_004955510:5,723,804...5,736,070
Ensembl chrNW_004955510:5,724,120...5,736,135 		JBrowse link
G Pax4 paired box 4 ISO RGD PMID:19012751 RGD:2311636 NCBI chrNW_004955479:8,660,089...8,664,463
Ensembl chrNW_004955479:8,660,089...8,664,463 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:19146846) RGD
MGI		 PMID:19012751 PMID:19146846 RGD:2311636 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Pde6a phosphodiesterase 6A acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955415:4,556,636...4,637,070
Ensembl chrNW_004955415:4,566,271...4,637,070 		JBrowse link
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955514:234,972...279,420
Ensembl chrNW_004955514:234,972...279,420 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chrNW_004955413:25,150,702...25,166,987
Ensembl chrNW_004955413:25,148,062...25,166,987 		JBrowse link
G Pfdn5 prefoldin subunit 5 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955458:555,971...559,927
Ensembl chrNW_004955458:555,971...559,927 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO (PMID:8637595)
(PMID:9630743)		 MGI PMID:8637595 PMID:9630743 NCBI chrNW_004955428:2,325,775...2,329,122
Ensembl chrNW_004955428:2,324,834...2,329,205 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO (PMID:21052544)
(PMID:28053051)
(PMID:15964665)		 MGI PMID:15964665 PMID:21052544 PMID:28053051 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:8453763 PMID:16914133 RGD:9831439 RGD:9831456 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:11562477) MGI PMID:11562477 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584 		JBrowse link
G Rd3 RD3 regulator of GUCY2D involved_in
acts_upstream_of_or_within		 ISO (MGI:52860|PMID:8486383)
(PMID:21052544)		 UniProt
MGI		 PMID:8486383 PMID:21052544 MGI:52860 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Ret ret proto-oncogene ISO RGD PMID:16650834 RGD:2324945 NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Rnpep arginyl aminopeptidase ISO RGD PMID:15500823 RGD:2325937 NCBI chrNW_004955406:38,103,701...38,122,162
Ensembl chrNW_004955406:38,103,426...38,122,358 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:28053051) MGI PMID:28053051 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (MGI:5546314|PMID:23652001) UniProt PMID:23652001 MGI:5546314 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO (PMID:10049578), (PMID:9331275) MGI PMID:9331275 PMID:10049578 NCBI chrNW_004955427:3,201,173...3,204,516
Ensembl chrNW_004955427:3,201,173...3,204,516 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 ISO RGD PMID:2647502 RGD:5133699 NCBI chrNW_004955414:19,850,523...19,904,879
Ensembl chrNW_004955414:19,850,530...19,905,266 		JBrowse link
G Scaper S-phase cyclin A associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) MGI PMID:28794130 NCBI chrNW_004955450:1,479,983...1,821,681
Ensembl chrNW_004955450:1,480,287...1,812,082 		JBrowse link
G Serpinf1 serpin family F member 1 ISO RGD PMID:21738387 RGD:8655555 NCBI chrNW_004955481:1,414,930...1,426,436
Ensembl chrNW_004955481:1,414,930...1,426,241 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:17003410) MGI PMID:17003410 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in ISO (PMID:28703795) MGI PMID:28703795 NCBI chrNW_004955434:8,790,685...8,879,757
Ensembl chrNW_004955434:8,790,685...8,879,757 		JBrowse link
G Slc4a5 solute carrier family 4 member 5 acts_upstream_of_or_within ISO (PMID:21705333) MGI PMID:21705333 NCBI chrNW_004955424:11,426,020...11,537,141
Ensembl chrNW_004955424:11,449,819...11,535,379 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004955436:3,385,216...3,542,497
Ensembl chrNW_004955436:3,386,180...3,540,933 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:20711468) MGI PMID:20711468 NCBI chrNW_004955422:17,768,469...17,778,976
Ensembl chrNW_004955422:17,768,469...17,779,003 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:18973577) MGI PMID:18973577 NCBI chrNW_004955402:7,130,809...7,138,945
Ensembl chrNW_004955402:7,129,484...7,138,340 		JBrowse link
G Tgif2 TGFB induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) MGI PMID:18926818 NCBI chrNW_004955422:25,024,359...25,042,568
Ensembl chrNW_004955422:25,024,359...25,041,459 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:24791901) MGI PMID:24791901 NCBI chrNW_004955612:109,742...351,255
Ensembl chrNW_004955612:109,743...353,918 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955414:23,832,741...23,919,697
Ensembl chrNW_004955414:23,898,345...23,917,952 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955404:31,414,076...31,465,205
Ensembl chrNW_004955404:31,414,208...31,464,968 		JBrowse link
G Ush2a usherin ISO RGD PMID:12160733 RGD:634438 NCBI chrNW_004955406:1,837,831...2,499,664
Ensembl chrNW_004955406:1,838,885...2,496,980 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:10595508) MGI PMID:10595508 NCBI chrNW_004955424:14,283,336...14,309,809
Ensembl chrNW_004955424:14,283,327...14,309,809 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:23700402 RGD:11041783 NCBI chrNW_004955415:29,107,060...29,175,374
Ensembl chrNW_004955415:29,107,034...29,175,538 		JBrowse link
G Znf513 zinc finger protein 513 involved_in ISO (PMID:20797688) UniProt PMID:20797688 NCBI chrNW_004955469:9,340,872...9,344,593
Ensembl chrNW_004955469:9,340,878...9,344,593 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6 ADP ribosylation factor like GTPase 6 acts_upstream_of_or_within ISO (PMID:22139371)
(PMID:20333246)		 MGI PMID:20333246 PMID:22139371 NCBI chrNW_004955407:360,898...387,563
Ensembl chrNW_004955407:360,600...380,900 		JBrowse link
G Calb1 calbindin 1 involved_in ISO (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chrNW_004955417:6,944,300...6,969,341
Ensembl chrNW_004955417:6,942,900...6,969,502 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:17234588) MGI PMID:17234588 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chrNW_004955414:1,467,087...2,083,914
Ensembl chrNW_004955414:1,472,067...1,962,265 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chrNW_004955422:10,731,004...10,733,522 JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chrNW_004955455:9,182,405...9,210,365
Ensembl chrNW_004955455:9,183,475...9,210,506 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chrNW_004955433:12,889,025...12,895,090
Ensembl chrNW_004955433:12,889,001...12,895,121 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chrNW_004955405:41,891,430...42,225,066
Ensembl chrNW_004955405:41,931,058...42,139,608 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249)
(MGI:1353814|PMID:10741426)		 UniProt PMID:10741426 PMID:18094249 MGI:1353814 MGI:3772525 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Megf11 multiple EGF like domains 11 involved_in ISO (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chrNW_004955450:9,355,134...9,634,747
Ensembl chrNW_004955450:9,355,060...9,632,119 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:29654250) MGI PMID:29654250 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Prom1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Ptprm protein tyrosine phosphatase receptor type M involved_in ISO (PMID:14623235) UniProt PMID:14623235 NCBI chrNW_004955402:3,243,447...3,756,457
Ensembl chrNW_004955402:3,244,222...3,756,925 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (PMID:22605914) MGI PMID:22605914 NCBI chrNW_004955567:1,091,636...1,108,648
Ensembl chrNW_004955567:1,091,636...1,108,732 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:19766171)
(PMID:29677370)		 MGI PMID:19766171 PMID:29677370 NCBI chrNW_004955434:8,790,685...8,879,757
Ensembl chrNW_004955434:8,790,685...8,879,757 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chrNW_004955411:7,143,095...7,171,285
Ensembl chrNW_004955411:7,142,607...7,170,467 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISO (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chrNW_004955479:2,570,937...2,636,884
Ensembl chrNW_004955479:2,570,937...2,635,857 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:17234588), (PMID:25147295)
(PMID:12915475)		 MGI PMID:12915475 PMID:17234588 PMID:25147295 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004955427:2,825,940...2,919,282
Ensembl chrNW_004955427:2,826,457...2,919,282 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (PMID:20144606) MGI PMID:20144606 NCBI chrNW_004955418:5,027,962...5,191,346
Ensembl chrNW_004955418:5,027,174...5,191,346 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:15716406) MGI PMID:15716406 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955427:11,639,942...11,731,910
Ensembl chrNW_004955427:11,606,909...11,724,004 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within ISO (PMID:17301087) MGI PMID:17301087 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Rp1 RP1 axonemal microtubule associated acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:10725384) MGI PMID:10725384 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:16651659) MGI PMID:16651659 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:16854970), (PMID:8630490) MGI PMID:8630490 PMID:16854970 NCBI chrNW_004955523:1,192,035...1,207,949
Ensembl chrNW_004955523:1,193,686...1,210,641 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chrNW_004955427:25,438,652...25,467,360
Ensembl chrNW_004955427:25,438,652...25,467,360 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chrNW_004955547:2,278,548...2,293,865
Ensembl chrNW_004955547:2,279,042...2,294,443 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (MGI:4436974|PMID:19903896) BHF-UCL PMID:19903896 MGI:4436974 NCBI chrNW_004955457:12,235,780...12,315,680
Ensembl chrNW_004955457:12,235,780...12,316,727 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within ISO (PMID:23217714)
(PMID:25083995), (PMID:25414188)		 MGI PMID:23217714 PMID:25083995 PMID:25414188 NCBI chrNW_004955414:6,094,585...6,103,910
Ensembl chrNW_004955414:6,094,585...6,098,865 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:21212189) MGI PMID:21212189 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chrNW_004955405:41,891,430...42,225,066
Ensembl chrNW_004955405:41,931,058...42,139,608 		JBrowse link
G LOC102009223 cytochrome P450 1B1 acts_upstream_of_or_within ISO (PMID:19005183) MGI PMID:19005183 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:22272305)
(PMID:25083995)		 MGI PMID:22272305 PMID:25083995 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:15716406), (PMID:18978344), (PMID:28575130), (PMID:29654250)
(PMID:15716406), (PMID:29715368)
(PMID:23217714)
(PMID:25083995), (PMID:25414188)		 MGI PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO (PMID:25414188) MGI PMID:25414188 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (PMID:25224828) MGI PMID:25224828 NCBI chrNW_004955413:25,150,702...25,166,987
Ensembl chrNW_004955413:25,148,062...25,166,987 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (MGI:1931346|PMID:11239463) UniProt PMID:11239463 MGI:1931346 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISO (MGI:2680741|PMID:14624252)
(MGI:1931346|PMID:11239463)		 UniProt PMID:11239463 PMID:14624252 MGI:1931346 MGI:2680741 NCBI chrNW_004955415:4,365,848...4,403,317
Ensembl chrNW_004955415:4,365,743...4,403,587 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (PMID:29715368) MGI PMID:29715368 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO (PMID:31698979) MGI PMID:31698979 NCBI chrNW_004955556:1,085,826...1,160,916
Ensembl chrNW_004955556:1,086,092...1,159,866 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within ISO (PMID:22535667) MGI PMID:22535667 NCBI chrNW_004955467:8,590,217...8,603,778
Ensembl chrNW_004955467:8,587,873...8,602,747 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within ISO (PMID:19197003) MGI PMID:19197003 NCBI chrNW_004955452:4,479,783...4,534,115
Ensembl chrNW_004955452:4,479,783...4,534,115 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:12172548), (PMID:15024691)
(PMID:19837032)		 BHF-UCL
MGI		 PMID:12172548 PMID:15024691 PMID:19837032 NCBI chrNW_004955414:6,094,585...6,103,910
Ensembl chrNW_004955414:6,094,585...6,098,865 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:11956231)
(PMID:18263894)
(PMID:19837032)		 RGD
MGI		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 RGD:40902996 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:19837032)
(PMID:18978344)		 MGI PMID:18978344 PMID:19837032 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:5562961|PMID:24401374) BHF-UCL PMID:24401374 MGI:5562961 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within ISO (PMID:22535667) MGI PMID:22535667 NCBI chrNW_004955466:6,476,822...6,564,890
Ensembl chrNW_004955466:6,476,822...6,564,988 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) MGI PMID:24467707 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955456:3,617,988...3,721,791
Ensembl chrNW_004955456:3,635,380...3,721,791 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO (PMID:18322081) MGI PMID:18322081 NCBI chrNW_004955433:12,518,786...12,522,744
Ensembl chrNW_004955433:12,519,338...12,522,118 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chrNW_004955433:12,889,025...12,895,090
Ensembl chrNW_004955433:12,889,001...12,895,121 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO (PMID:28199486) MGI PMID:28199486 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO (PMID:15043821)
(PMID:14745032)
(PMID:18322081)		 MGI PMID:14745032 PMID:15043821 PMID:18322081 NCBI chrNW_004955415:31,174,155...31,180,718
Ensembl chrNW_004955415:31,175,452...31,180,655 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:8630490) MGI PMID:8630490 NCBI chrNW_004955523:1,192,035...1,207,949
Ensembl chrNW_004955523:1,193,686...1,210,641 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chrNW_004955540:1,805,648...1,890,409
Ensembl chrNW_004955540:1,805,666...1,890,409 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:20818663) BHF-UCL PMID:20818663 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO (MGI:3621833|PMID:15035989) BHF-UCL PMID:15035989 MGI:3621833 NCBI chrNW_004955414:6,094,585...6,103,910
Ensembl chrNW_004955414:6,094,585...6,098,865 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G LOC102009223 cytochrome P450 1B1 involved_in ISO (MGI:4431324|PMID:20032512) UniProt PMID:20032512 MGI:4431324 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:15024691), (PMID:15346351)
(MGI:6092915|PMID:27031698)		 BHF-UCL
CACAO		 PMID:15024691 PMID:15346351 PMID:27031698 MGI:6092915 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:18978344), (PMID:22394677), (PMID:28575130) MGI PMID:18978344 PMID:22394677 PMID:28575130 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) UniProt PMID:23001562 MGI:5461109 NCBI chrNW_004955419:4,604,883...4,626,675
Ensembl chrNW_004955419:4,607,507...4,626,608 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:20203194) MGI PMID:20203194 NCBI chrNW_004955538:1,042,949...1,045,038 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955446:17,146,915...17,457,843
Ensembl chrNW_004955446:17,151,311...17,457,888 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955507:129,678...179,586
Ensembl chrNW_004955507:129,678...179,305 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of ISO (PMID:20203194) MGI PMID:20203194 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chrNW_004955412:20,480,284...20,484,958
Ensembl chrNW_004955412:20,480,284...20,484,958 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO (MGI:2158098|PMID:11724781) BHF-UCL PMID:11724781 MGI:2158098 NCBI chrNW_004955451:14,204,326...14,237,809
Ensembl chrNW_004955451:14,202,744...14,237,797 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004955436:3,385,216...3,542,497
Ensembl chrNW_004955436:3,386,180...3,540,933 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within ISO (PMID:33064130) MGI PMID:33064130 NCBI chrNW_004955414:5,810,639...6,016,949
Ensembl chrNW_004955414:5,810,639...6,017,591 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chrNW_004955424:12,130,496...12,258,684
Ensembl chrNW_004955424:12,130,607...12,258,522 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:15173597) MGI PMID:15173597 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Bhlhe23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chrNW_004955528:1,094,234...1,094,674 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:17712420) MGI PMID:17712420 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Nrl neural retina leucine zipper acts_upstream_of_or_within ISO (PMID:11694879) MGI PMID:11694879 NCBI chrNW_004955409:36,279,996...36,313,824
Ensembl chrNW_004955409:36,310,932...36,313,893 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:10516311) MGI PMID:10516311 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740 PMID:19805139 MGI:3652638 MGI:4366105 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chrNW_004955486:9,763,704...9,781,132
Ensembl chrNW_004955486:9,763,725...9,779,197 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chrNW_004955420:161,353...178,768
Ensembl chrNW_004955420:161,353...177,936 		JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chrNW_004955416:29,846,374...29,880,922
Ensembl chrNW_004955416:29,814,077...29,939,344 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Rorb RAR related orphan receptor B acts_upstream_of_or_within ISO (PMID:25296752) MGI PMID:25296752 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:26607664) MGI PMID:26607664 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO (PMID:32960171) MGI PMID:32960171 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
trabecular meshwork development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:20568247) MGI PMID:20568247 NCBI chrNW_004955419:1,782,566...1,857,375
Ensembl chrNW_004955419:1,782,566...1,857,375 		JBrowse link
G LOC102009223 cytochrome P450 1B1 involved_in ISO (MGI:5544856|PMID:23979599) UniProt PMID:23979599 MGI:5544856 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        animal organ development 3148
          sensory organ development 656
            eye development 429
              camera-type eye development 390
                anterior rotation of the optic cup 0
                camera-type eye morphogenesis + 144
                camera-type eye photoreceptor cell development 0
                cornea development in camera-type eye + 9
                embryonic camera-type eye development + 40
                extraocular skeletal muscle development + 6
                eyelid development in camera-type eye 16
                hyaloid vascular plexus regression 8
                lens development in camera-type eye + 79
                post-embryonic camera-type eye development + 10
                retina development in camera-type eye + 208
                trabecular meshwork development 2
Path 2
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        multicellular organism development 4550
          system development 3953
            sensory system development 438
              visual system development 432
                eye development 429
                  camera-type eye development 390
                    anterior rotation of the optic cup 0
                    camera-type eye morphogenesis + 144
                    camera-type eye photoreceptor cell development 0
                    cornea development in camera-type eye + 9
                    embryonic camera-type eye development + 40
                    extraocular skeletal muscle development + 6
                    eyelid development in camera-type eye 16
                    hyaloid vascular plexus regression 8
                    lens development in camera-type eye + 79
                    post-embryonic camera-type eye development + 10
                    retina development in camera-type eye + 208
                    trabecular meshwork development 2
paths to the root