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ONTOLOGY REPORT - ANNOTATIONS

Term:pyridoxal phosphate biosynthetic process
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Accession:GO:0042823 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms:exact_synonym: active vitamin B6 biosynthesis;   active vitamin B6 biosynthetic process;   pyridoxal phosphate anabolism;   pyridoxal phosphate biosynthesis;   pyridoxal phosphate formation;   pyridoxal phosphate synthesis
 xref: MetaCyc:PWY0-845

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pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:2988502 RGD:2303018 NCBI chr 2:87,489,249...87,534,376
Ensembl chr 2:87,489,315...87,531,621 		JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:68,338,847...68,360,492
Ensembl chr16:68,338,936...68,344,050 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:87,489,249...87,534,376
Ensembl chr 2:87,489,315...87,531,621 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19806
    cellular process 19328
      metabolic process 13124
        aldehyde metabolic process 74
          pyridoxal phosphate metabolic process 4
            pyridoxal phosphate biosynthetic process 2
              'de novo' pyridoxal 5'-phosphate biosynthetic process 0
              pyridoxal 5'-phosphate salvage + 1
Path 2
Term Annotations click to browse term
  biological_process 19806
    cellular process 19328
      metabolic process 13124
        small molecule metabolic process 1726
          vitamin metabolic process 104
            water-soluble vitamin metabolic process 50
              vitamin B6 metabolic process 4
                pyridoxal phosphate metabolic process 4
                  pyridoxal phosphate biosynthetic process 2
                    'de novo' pyridoxal 5'-phosphate biosynthetic process 0
                    pyridoxal 5'-phosphate salvage + 1
paths to the root