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ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin B6 biosynthetic process
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Accession:GO:0042819 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Synonyms:exact_synonym: vitamin B6 anabolism;   vitamin B6 biosynthesis;   vitamin B6 formation;   vitamin B6 synthesis
 related_synonym: pyridoxine-5'-phosphate biosynthesis


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pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pdxkl1 pyridoxal kinase like 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr20:10,162,934...10,192,572
Ensembl chr20:10,164,099...10,192,739 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12824491)
(MGI:7489789|PMID:9601034)
GO_REF:0000033		 RGD
GO_Central		 PMID:9601034 PMID:12824491 GO_REF:0000033 MGI:7489789 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871 		JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      metabolic process 12309
        biosynthetic process 8436
          pyridine-containing compound biosynthetic process 24
            vitamin B6 biosynthetic process 3
              pyridoxal biosynthetic process 0
              pyridoxal phosphate biosynthetic process + 3
              pyridoxine biosynthetic process 1
Path 2
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      metabolic process 12309
        small molecule metabolic process 1899
          vitamin metabolic process 103
            water-soluble vitamin metabolic process 53
              water-soluble vitamin biosynthetic process 15
                vitamin B6 biosynthetic process 3
                  pyridoxal biosynthetic process 0
                  pyridoxal phosphate biosynthetic process + 3
                  pyridoxine biosynthetic process 1
paths to the root