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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleolar large rRNA transcription by RNA polymerase I
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Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I

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nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:5,265,489...5,284,231
Ensembl chrNW_004936524:5,265,441...5,288,417 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:6,118,241...6,194,506
Ensembl chrNW_004936532:6,117,864...6,184,138 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15249688) MGI
TreeGrafter		 PMID:15249688 GO_REF:0000118 NCBI chrNW_004936504:4,533,993...4,569,997
Ensembl chrNW_004936504:4,533,981...4,570,055 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9774341) Ensembl
MGI		 PMID:9774341 GO_REF:0000107 NCBI chrNW_004936903:436,949...448,670
Ensembl chrNW_004936903:435,447...448,025 		JBrowse link
G LOC101956559 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,474,408...8,509,269
Ensembl chrNW_004936521:8,473,794...8,509,268 		JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:2,200,588...2,254,130
Ensembl chrNW_004936487:2,198,973...2,254,151 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,644,457...1,665,081
Ensembl chrNW_004936646:1,644,457...1,665,086 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Nol11 nucleolar protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:5,448,346...5,475,064
Ensembl chrNW_004936541:5,448,658...5,475,020 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,321,278...3,326,720
Ensembl chrNW_004936664:3,321,136...3,326,093 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,436,137...7,457,709
Ensembl chrNW_004936492:7,431,990...7,457,709 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,152,846...1,246,718
Ensembl chrNW_004936659:1,169,792...1,249,213 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,276,239...1,308,945
Ensembl chrNW_004936619:1,275,362...1,308,913 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chrNW_004936489:9,983,935...9,993,179
Ensembl chrNW_004936489:9,992,156...9,992,938 		JBrowse link
G LOC101959095 RNA polymerase I and III subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:22,841,094...22,842,798
Ensembl chrNW_004936472:22,841,094...22,881,713 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936546:5,732,413...5,746,481
Ensembl chrNW_004936546:5,731,825...5,746,569 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:494,445...499,659
Ensembl chrNW_004936588:494,399...499,952 		JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004936541:671,178...687,485
Ensembl chrNW_004936541:671,157...684,240 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17429
    cellular process 17029
      metabolic process 11322
        biosynthetic process 8311
          macromolecule biosynthetic process 7404
            gene expression 7019
              DNA-templated transcription 3051
                transcription by RNA polymerase I 68
                  nucleolar large rRNA transcription by RNA polymerase I 25
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 9
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 14
                    transcription elongation by RNA polymerase I + 8
Path 2
Term Annotations click to browse term
  biological_process 17429
    cellular process 17029
      metabolic process 11322
        primary metabolic process 10062
          nucleobase-containing compound metabolic process 6205
            nucleobase-containing compound biosynthetic process 5355
              nucleic acid biosynthetic process 5112
                RNA biosynthetic process 5010
                  DNA-templated transcription 3051
                    rRNA transcription 36
                      nucleolar large rRNA transcription by RNA polymerase I 25
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 9
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 14
                        transcription elongation by RNA polymerase I + 8
paths to the root