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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleolar large rRNA transcription by RNA polymerase I
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Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I


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nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:238,197,659...238,219,475
Ensembl chr 1:238,197,684...238,220,524 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:126,527,381...126,586,403
Ensembl chr 3:126,527,385...126,586,274 		JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:15249688) GO_Central
MGI		 PMID:15249688 GO_REF:0000033 NCBI chr 2:151,368,264...151,401,029
Ensembl chr 2:151,368,289...151,401,027 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEDD death effector domain containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:89,311,308...89,323,692
Ensembl chr 4:89,311,310...89,323,724 		JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IBA
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,534,138...137,623,886 		JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,229 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:53,443,453...53,451,707
Ensembl chr 6:53,443,385...53,452,017 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,364,877...67,395,730 		JBrowse link
G IPPK inositol-pentakisphosphate 2-kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:42,308,001...42,368,162
Ensembl chr 3:42,308,005...42,368,118 		JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,752,405...22,785,509
Ensembl chr 5:22,752,374...22,785,501 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G NCL nucleolin involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:132,163,453...132,174,214
Ensembl chr15:132,162,516...132,174,172 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:14,035,649...14,058,421
Ensembl chr12:14,035,689...14,058,414 		JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:54,524,172...54,529,700
Ensembl chr 6:54,524,172...54,535,249 		JBrowse link
G PWP1 PWP1 homolog, endonuclein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:12,703,067...12,730,884
Ensembl chr 5:12,701,589...12,730,849 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,078,166...1,084,119 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,320...51,757,553 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066 		JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,983 		JBrowse link
G POLR1D RNA polymerase I and III subunit D involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:5,044,274...5,045,921
Ensembl chr11:5,044,329...5,089,766 		JBrowse link
G POLR1E RNA polymerase I subunit E involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:238,197,659...238,219,475
Ensembl chr 1:238,197,684...238,220,524 		JBrowse link
G POLR1F RNA polymerase I subunit F involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:88,760,394...88,785,802
Ensembl chr 9:88,760,398...88,785,802 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:77,330,755...77,341,910
Ensembl chr 2:77,330,686...77,341,900 		JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,129 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      metabolic process 11698
        biosynthetic process 8557
          macromolecule biosynthetic process 7652
            gene expression 7238
              DNA-templated transcription 3236
                transcription by RNA polymerase I 63
                  nucleolar large rRNA transcription by RNA polymerase I 26
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                    transcription elongation by RNA polymerase I + 9
Path 2
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      metabolic process 11698
        primary metabolic process 10348
          nucleobase-containing compound metabolic process 6273
            nucleobase-containing compound biosynthetic process 5317
              nucleic acid biosynthetic process 5070
                RNA biosynthetic process 4969
                  DNA-templated transcription 3236
                    rRNA transcription 38
                      nucleolar large rRNA transcription by RNA polymerase I 26
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                        transcription elongation by RNA polymerase I + 9
paths to the root