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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleolar large rRNA transcription by RNA polymerase I
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Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I

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nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:24207024) UniProt PMID:24207024 NCBI chrNW_004624930:1,104,387...1,120,580
Ensembl chrNW_004624930:1,104,311...1,122,077 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624865:5,089,425...5,128,228
Ensembl chrNW_004624865:5,088,926...5,128,289 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15249688) MGI
TreeGrafter		 PMID:15249688 GO_REF:0000118 NCBI chrNW_004624774:9,660,272...9,699,708 JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain containing acts_upstream_of_or_within ISO (PMID:9774341) MGI PMID:9774341 NCBI chrNW_004624794:243,584...254,495
Ensembl chrNW_004624794:244,068...255,110 		JBrowse link
G LOC101706296 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101712013 core histone macro-H2A.2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:4,227,897...4,276,595
Ensembl chrNW_004624754:4,227,644...4,279,077 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) UniProt PMID:27729611 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) UniProt PMID:26089203 NCBI chrNW_004624828:269,444...301,899
Ensembl chrNW_004624828:269,843...302,301 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO (PMID:23203802) CAFA PMID:23203802 NCBI chrNW_004624868:3,722,713...3,781,639
Ensembl chrNW_004624868:3,722,800...3,779,747 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) CAFA PMID:10791971 NCBI chrNW_004624802:10,443,216...10,460,971
Ensembl chrNW_004624802:10,443,223...10,460,971 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:24036451) UniProt PMID:24036451 NCBI chrNW_004624818:1,570,155...1,698,264
Ensembl chrNW_004624818:1,570,276...1,698,259 		JBrowse link
G Ncl nucleolin involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chrNW_004624843:4,620,501...4,630,521 JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) UniProt PMID:22916032 NCBI chrNW_004624870:706,755...732,541
Ensembl chrNW_004624870:707,020...732,667 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO (PMID:22368283)
(PMID:24036451)		 UniProt PMID:22368283 PMID:24036451 NCBI chrNW_004624832:4,757,367...4,761,974
Ensembl chrNW_004624832:4,757,344...4,762,181 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) FlyBase PMID:29065309 NCBI chrNW_004624750:2,103,530...2,119,088
Ensembl chrNW_004624750:2,103,469...2,119,166 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chrNW_004624747:10,362,149...10,396,580
Ensembl chrNW_004624747:10,361,260...10,396,719 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO (PMID:24207024) UniProt PMID:24207024 NCBI chrNW_004624801:10,753,480...10,760,601
Ensembl chrNW_004624801:10,753,333...10,764,122 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624732:13,730,648...13,776,886
Ensembl chrNW_004624732:13,729,947...13,776,870 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624928:458,651...532,201
Ensembl chrNW_004624928:463,279...530,115 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624785:70,425...82,098
Ensembl chrNW_004624785:69,978...82,012 		JBrowse link
G Polr1d RNA polymerase I and III subunit D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624776:10,872,975...10,874,852
Ensembl chrNW_004624776:10,810,952...10,875,214 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:10,905,010...10,916,141
Ensembl chrNW_004624739:10,904,932...10,917,075 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,547,401...7,553,282
Ensembl chrNW_004624828:7,547,460...7,553,282 		JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chrNW_004624795:768,627...779,174
Ensembl chrNW_004624795:768,697...780,639 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    cellular process 17226
      metabolic process 11003
        biosynthetic process 7916
          macromolecule biosynthetic process 7008
            gene expression 6584
              DNA-templated transcription 3195
                transcription by RNA polymerase I 60
                  nucleolar large rRNA transcription by RNA polymerase I 26
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                    transcription elongation by RNA polymerase I + 8
Path 2
Term Annotations click to browse term
  biological_process 17650
    cellular process 17226
      metabolic process 11003
        primary metabolic process 9837
          nucleobase-containing compound metabolic process 5846
            nucleobase-containing compound biosynthetic process 4967
              nucleic acid biosynthetic process 4726
                RNA biosynthetic process 4611
                  DNA-templated transcription 3195
                    rRNA transcription 36
                      nucleolar large rRNA transcription by RNA polymerase I 26
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                        transcription elongation by RNA polymerase I + 8
paths to the root