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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleolar large rRNA transcription by RNA polymerase I
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Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I


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nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e polymerase (RNA) I polypeptide E involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:45,018,609...45,034,279
Ensembl chr 4:45,018,583...45,036,565 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I, B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:24,548,580...24,608,570
Ensembl chr12:24,548,358...24,608,538 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:15249688) MGI
GO_Central		 PMID:15249688 GO_REF:0000033 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain-containing acts_upstream_of_or_within IDA (PMID:9774341) MGI PMID:9774341 NCBI chr 1:171,152,229...171,170,843
Ensembl chr 1:171,156,713...171,169,899 		JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IMP
IBA
ISO		 (PMID:24071584) UniProt
GO_Central		 PMID:24071584 GO_REF:0000033 GO_REF:0000119 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174 		JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA
IBA
ISO		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:15,671,760...15,680,033
Ensembl chr 7:15,670,108...15,679,999 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H box helicase 11 involved_in ISS UniProt GO_REF:0000024 NCBI chr17:66,430,508...66,459,169
Ensembl chr17:66,430,515...66,459,169 		JBrowse link
G Ippk inositol 1,3,4,5,6-pentakisphosphate 2-kinase involved_in ISO GO_Central GO_REF:0000119 NCBI chr13:49,574,673...49,618,050
Ensembl chr13:49,574,725...49,618,049 		JBrowse link
G Mars1 methionine-tRNA synthetase 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:127,132,090...127,147,655
Ensembl chr10:127,132,090...127,147,655 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Ncl nucleolin involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:86,272,441...86,287,177
Ensembl chr 1:86,272,441...86,287,122 		JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:107,057,477...107,080,207
Ensembl chr11:107,057,489...107,080,207 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:44,800,036...44,809,489
Ensembl chr 7:44,803,727...44,809,489 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:85,707,695...85,724,967
Ensembl chr10:85,665,358...85,724,960 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr10:75,732,603...75,757,448
Ensembl chr10:75,732,603...75,757,451 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:120,509,197...120,515,840
Ensembl chr11:120,509,198...120,516,066 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 acts_upstream_of_or_within IMP (PMID:23562818) MGI PMID:23562818 NCBI chr 7:19,115,942...19,129,619
Ensembl chr 7:19,115,935...19,129,619 		JBrowse link
G Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 acts_upstream_of_or_within EXP (PMID:23562818) MGI PMID:23562818 NCBI chr18:32,373,357...32,403,206
Ensembl chr18:32,373,353...32,403,204 		JBrowse link
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 acts_upstream_of_or_within IMP (PMID:23562818) MGI PMID:23562818 NCBI chr14:32,235,248...32,302,947
Ensembl chr14:32,235,478...32,302,947 		JBrowse link
G Gtf2h5 general transcription factor IIH, polypeptide 5 acts_upstream_of_or_within IMP (PMID:23562818) MGI PMID:23562818 NCBI chr17:6,130,103...6,135,763
Ensembl chr17:6,130,061...6,136,792 		JBrowse link
G Polr1d polymerase (RNA) I polypeptide D involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:147,013,525...147,048,171
Ensembl chr 5:147,013,860...147,048,407 		JBrowse link
G Polr1e polymerase (RNA) I polypeptide E involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:45,018,609...45,034,279
Ensembl chr 4:45,018,583...45,036,565 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:33,479,593...33,491,434
Ensembl chr12:33,479,634...33,491,391 		JBrowse link
G Polr2e polymerase (RNA) II (DNA directed) polypeptide E involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:79,871,787...79,875,493
Ensembl chr10:79,871,783...79,875,629 		JBrowse link
G Ubtf upstream binding transcription factor, RNA polymerase I acts_upstream_of_or_within IDA (PMID:23562818) MGI PMID:23562818 NCBI chr11:102,195,393...102,214,738
Ensembl chr11:102,195,386...102,210,568 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28630
    cellular process 18394
      metabolic process 11634
        biosynthetic process 8318
          macromolecule biosynthetic process 7297
            gene expression 6864
              DNA-templated transcription 3559
                transcription by RNA polymerase I 78
                  nucleolar large rRNA transcription by RNA polymerase I 26
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                    transcription elongation by RNA polymerase I + 9
Path 2
Term Annotations click to browse term
  biological_process 28630
    cellular process 18394
      metabolic process 11634
        primary metabolic process 10231
          nucleobase-containing compound metabolic process 5770
            nucleobase-containing compound biosynthetic process 4718
              nucleic acid biosynthetic process 4419
                RNA biosynthetic process 4308
                  DNA-templated transcription 3559
                    rRNA transcription 43
                      nucleolar large rRNA transcription by RNA polymerase I 26
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                        transcription elongation by RNA polymerase I + 9
paths to the root