Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:nucleolar large rRNA transcription by RNA polymerase I
go back to main search page
Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I


show annotations for term's descendants           Sort by:
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E involved_in IDA (PMID:24207024) UniProt PMID:24207024 NCBI chr 9:37,485,948...37,503,697
Ensembl chr 9:37,485,948...37,503,697 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:9,843,442...9,934,416
Ensembl chr 2:9,843,443...9,934,416 		JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:15249688) GO_Central
MGI		 PMID:15249688 GO_REF:0000033 NCBI chr 5:150,357,697...150,400,293
Ensembl chr 5:150,357,629...150,400,308 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEDD death effector domain containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:161,120,974...161,132,667
Ensembl chr 1:161,120,974...161,132,688 		JBrowse link
G MACROH2A1 macroH2A.1 histone involved_in IMP
IEA
IBA
IGI		 (PMID:24071584) UniProt
Ensembl
GO_Central		 PMID:24071584 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914 		JBrowse link
G MACROH2A2 macroH2A.2 histone involved_in IGI
IBA		 (PMID:24071584) UniProt
GO_Central		 PMID:24071584 GO_REF:0000033 NCBI chr10:70,052,846...70,112,282
Ensembl chr10:70,052,544...70,112,282 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IMP (PMID:27729611) UniProt PMID:27729611 NCBI chr19:47,745,546...47,757,058
Ensembl chr19:47,745,546...47,757,058 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in IMP (PMID:26089203) UniProt PMID:26089203 NCBI chr12:31,073,860...31,104,799
Ensembl chr12:31,073,860...31,104,799 		JBrowse link
G IPPK inositol-pentakisphosphate 2-kinase involved_in IMP (PMID:23203802) CAFA PMID:23203802 NCBI chr 9:92,613,183...92,670,131
Ensembl chr 9:92,613,183...92,670,131 		JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IMP (PMID:10791971) CAFA PMID:10791971 NCBI chr12:57,488,068...57,516,652
Ensembl chr12:57,475,445...57,517,569 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IMP (PMID:24036451) UniProt PMID:24036451 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G NCL nucleolin involved_in IMP (PMID:24071584) UniProt PMID:24071584 NCBI chr 2:231,453,531...231,464,484
Ensembl chr 2:231,453,531...231,483,641 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IMP (PMID:22916032) UniProt PMID:22916032 NCBI chr17:67,717,936...67,744,531
Ensembl chr17:67,717,931...67,744,531 		JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IGI
IMP		 (PMID:22368283)
(PMID:24036451)		 UniProt PMID:22368283 PMID:24036451 NCBI chr19:49,446,298...49,451,814
Ensembl chr19:49,446,298...49,453,497 		JBrowse link
G PWP1 PWP1 homolog, endonuclein involved_in IDA (PMID:29065309) FlyBase PMID:29065309 NCBI chr12:107,685,799...107,713,162
Ensembl chr12:107,685,799...107,713,162 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in IMP (PMID:22368283) UniProt PMID:22368283 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426 		JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IGI
IMP		 (PMID:22368283) UniProt PMID:22368283 NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,009 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT7 sirtuin 7 involved_in IDA (PMID:24207024) UniProt PMID:24207024 NCBI chr17:81,911,939...81,918,176
Ensembl chr17:81,911,939...81,921,323 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166 		JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,168...49,539,538 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:158,168,350...158,199,344
Ensembl chr 6:158,168,350...158,199,344 		JBrowse link
G POLR1D RNA polymerase I and III subunit D involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:27,620,743...27,667,411
Ensembl chr13:27,620,742...27,744,237 		JBrowse link
G POLR1E RNA polymerase I subunit E involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:37,485,948...37,503,697
Ensembl chr 9:37,485,948...37,503,697 		JBrowse link
G POLR1F RNA polymerase I subunit F involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:19,695,461...19,709,037
Ensembl chr 7:19,695,461...19,709,037 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:1,086,574...1,095,375
Ensembl chr19:1,086,574...1,095,380 		JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr17:44,205,040...44,221,304
Ensembl chr17:44,205,033...44,221,626 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27142
    cellular process 19785
      metabolic process 13546
        biosynthetic process 10183
          macromolecule biosynthetic process 9103
            gene expression 8669
              DNA-templated transcription 3809
                transcription by RNA polymerase I 75
                  nucleolar large rRNA transcription by RNA polymerase I 26
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                    transcription elongation by RNA polymerase I + 9
Path 2
Term Annotations click to browse term
  biological_process 27142
    cellular process 19785
      metabolic process 13546
        primary metabolic process 11734
          nucleobase-containing compound metabolic process 7275
            nucleobase-containing compound biosynthetic process 6178
              nucleic acid biosynthetic process 5859
                RNA biosynthetic process 5737
                  DNA-templated transcription 3809
                    rRNA transcription 46
                      nucleolar large rRNA transcription by RNA polymerase I 26
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                        transcription elongation by RNA polymerase I + 9
paths to the root