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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleolar large rRNA transcription by RNA polymerase I
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Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I

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nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:43,082,707...43,101,416
Ensembl chr12:43,083,197...43,108,367 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:97,704,251...97,787,738
Ensembl chr14:97,704,187...97,787,639 		JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15249688) MGI
TreeGrafter		 PMID:15249688 GO_REF:0000118 NCBI chr23:52,966,341...53,007,539
Ensembl chr23:52,966,419...53,006,288 		JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEDD death effector domain containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:2,848,294...2,858,746
Ensembl chr20:2,848,510...2,858,618 		JBrowse link
G H2AFY core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,113,212...38,178,227
Ensembl chr23:38,113,195...38,168,382 		JBrowse link
G H2AFY2 H2A histone family member Y2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:61,194,887...61,254,361
Ensembl chr 9:61,195,431...61,231,228 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:9,260,206...9,290,308
Ensembl chr11:9,260,239...9,291,162 		JBrowse link
G IPPK inositol-pentakisphosphate 2-kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:103,122,293...103,184,453
Ensembl chr12:103,123,557...103,184,174 		JBrowse link
G MARS1 methionyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:53,397,380...53,410,596 JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,522,667...120,678,988
Ensembl chr20:120,525,737...120,679,020 		JBrowse link
G NCL nucleolin involved_in ISO (PMID:24071584) UniProt PMID:24071584 NCBI chr10:117,478,279...117,487,810 JBrowse link
G NCL nucleolin involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:117,477,904...117,486,774 JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,720,229...53,747,715
Ensembl chr16:53,720,571...53,747,658 		JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,627,125...42,633,467
Ensembl chr 6:42,627,097...42,632,932 		JBrowse link
G PWP1 PWP1 homolog, endonuclein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:102,917,553...102,943,696
Ensembl chr11:102,917,606...102,942,481 		JBrowse link
G SMARCA4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO (PMID:22368283) UniProt PMID:22368283 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,902,985...6,945,111
Ensembl chr19:6,902,951...6,944,784 		JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G POLR1F RNA polymerase I subunit F involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:38,488,802...38,501,106
Ensembl chr21:38,488,825...38,501,158 		JBrowse link
G POLR2E RNA polymerase II, I and III subunit E involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:844,196...856,127
Ensembl chr 6:841,615...855,214 		JBrowse link
G UBTF upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) MGI PMID:23562818 NCBI chr16:62,168,288...62,184,902
Ensembl chr16:62,171,666...62,182,320 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      metabolic process 13115
        biosynthetic process 9917
          macromolecule biosynthetic process 8952
            gene expression 8535
              DNA-templated transcription 3356
                transcription by RNA polymerase I 64
                  nucleolar large rRNA transcription by RNA polymerase I 26
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 11
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 16
                    transcription elongation by RNA polymerase I + 7
Path 2
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      metabolic process 13115
        primary metabolic process 11543
          nucleobase-containing compound metabolic process 7292
            nucleobase-containing compound biosynthetic process 6377
              nucleic acid biosynthetic process 6118
                RNA biosynthetic process 6013
                  DNA-templated transcription 3356
                    rRNA transcription 37
                      nucleolar large rRNA transcription by RNA polymerase I 26
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 11
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 16
                        transcription elongation by RNA polymerase I + 7
paths to the root