ONTOLOGY REPORT - ANNOTATIONS
Term: nucleolar large rRNA transcription by RNA polymerase I
Accession: GO:0042790
browse the term
Definition: The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms: exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter; transcription of nuclear rRNA large Pol I transcript; transcription of nucleolar large rRNA by RNA polymerase I
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Polr1e
RNA polymerase I subunit E
involved_in
ISO
(PMID:24207024)
RGD
PMID:24207024
NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
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Taf1b
TATA-box binding protein associated factor, RNA polymerase I subunit B
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:46,845,571...46,923,209
Ensembl chr 6:41,117,420...41,194,593
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Tcof1
treacle ribosome biogenesis factor 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2386185 (PMID:15249688)
GO_Central RGD
PMID:15249688
GO_REF:0000033
NCBI chr18:56,537,437...56,570,727
Ensembl chr18:54,267,026...54,300,324
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Dedd
death effector domain-containing
acts_upstream_of_or_within
ISO
(PMID:9774341)
RGD
PMID:9774341
NCBI chr13:86,286,341...86,301,789
Ensembl chr13:83,756,108...83,769,332
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Macroh2a1
macroH2A.1 histone
involved_in
ISO IBA
UniProtKB:Q9P0M6 (PMID:24071584) GO_REF:0000033
RGD GO_Central
PMID:24071584
GO_REF:0000033
NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072
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Macroh2a2
macroH2A.2 histone
involved_in
ISO IBA
UniProtKB:P0C0S8 (PMID:24071584) GO_REF:0000033
RGD GO_Central
PMID:24071584
GO_REF:0000033
NCBI chr20:30,220,975...30,270,652
Ensembl chr20:29,678,222...29,727,891
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Nop53
NOP53 ribosome biogenesis factor
involved_in
ISO
(PMID:27729611)
RGD
PMID:27729611
NCBI chr 1:85,757,271...85,765,089
Ensembl chr 1:76,629,069...76,636,902
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Ddx11
DEAD/H-box helicase 11
involved_in
ISO
(PMID:26089203)
RGD
PMID:26089203
NCBI chr 9:113,204,886...113,309,692
Ensembl chr 9:105,833,504...105,862,550
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Ippk
inositol-pentakisphosphate 2-kinase
involved_in
ISO IEA
(PMID:23203802) GO_REF:0000107
RGD Ensembl
PMID:23203802
GO_REF:0000107
NCBI chr17:15,396,691...15,441,648
Ensembl chr17:15,190,265...15,229,541
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Mars1
methionyl-tRNA synthetase 1
involved_in
ISO
(PMID:10791971)
RGD
PMID:10791971
NCBI chr 7:65,006,456...65,023,880
Ensembl chr 7:63,121,142...63,138,495
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Mtor
mechanistic target of rapamycin kinase
involved_in
ISO IEA
(PMID:24036451) GO_REF:0000107
RGD Ensembl
PMID:24036451
GO_REF:0000107
NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
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Ncl
nucleolin
involved_in
ISO IEA
(PMID:24071584) GO_REF:0000107
RGD Ensembl
PMID:24071584
GO_REF:0000107
NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:86,998,019...87,008,136
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Nol11
nucleolar protein 11
involved_in
ISO
(PMID:22916032)
RGD
PMID:22916032
NCBI chr10:92,621,482...92,641,394
Ensembl chr10:92,121,833...92,141,677
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Pih1d1
PIH1 domain containing 1
involved_in
ISO
UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451)
RGD
PMID:22368283 PMID:24036451
NCBI chr 1:104,774,562...104,781,757
Ensembl chr 1:95,639,592...95,645,290
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Pwp1
PWP1 homolog, endonuclein
involved_in
ISO
(PMID:29065309)
RGD
PMID:29065309
NCBI chr 7:19,870,465...19,886,463
Ensembl chr 7:17,982,235...17,998,731
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Smarca4
SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4
involved_in
ISO IEA
(PMID:22368283) GO_REF:0000107
RGD Ensembl
PMID:22368283
GO_REF:0000107
NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975
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Smarcb1
SWI/SNF related BAF chromatin remodeling complex subunit B1
involved_in
ISO
UniProtKB:Q9NWS0 (PMID:22368283)
RGD
PMID:22368283
NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620
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Sirt7
sirtuin 7
involved_in
ISO ISS
(PMID:24207024) GO_REF:0000024
RGD UniProt
PMID:24207024
GO_REF:0000024
NCBI chr10:106,394,802...106,401,627
Ensembl chr10:105,896,476...105,903,172
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Ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit
acts_upstream_of_or_within
ISO
MGI:2183949 (PMID:23562818)
RGD
PMID:23562818
NCBI chr 1:88,161,342...88,175,102
Ensembl chr 1:79,033,326...79,047,102
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Ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit
acts_upstream_of_or_within
ISO
(PMID:23562818)
RGD
PMID:23562818
NCBI chr18:24,157,831...24,188,543
Ensembl chr18:23,883,580...23,914,329
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
acts_upstream_of_or_within
ISO
MGI:1932102 (PMID:23562818)
RGD
PMID:23562818
NCBI chr16:7,771,311...7,841,895
Ensembl chr16:7,765,013...7,835,587
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Gtf2h5
general transcription factor IIH subunit 5
acts_upstream_of_or_within
ISO
MGI:5514340 (PMID:23562818)
RGD
PMID:23562818
NCBI chr 1:49,061,904...49,068,612
Ensembl chr 1:46,656,859...46,664,939
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Polr1e
RNA polymerase I subunit E
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
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Polr1f
RNA polymerase I subunit F
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:55,780,706...55,797,935
Ensembl chr 6:50,053,289...50,070,514
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Polr2e
RNA polymerase II, I and III subunit E
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:10,317,332...10,321,280
Ensembl chr 7:9,666,716...9,670,643
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Ubtf
upstream binding transcription factor
acts_upstream_of_or_within
ISO
(PMID:23562818)
RGD
PMID:23562818
NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
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