Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nucleolar large rRNA transcription by RNA polymerase I
go back to main search page
Accession:GO:0042790 term browser browse the term
Definition:The synthesis of the large ribosomal RNA (rRNA) transcript which encodes several rRNAs, e.g. in mammals 28S, 18S and 5.8S, from a nuclear DNA template transcribed by RNA polymerase I.
Synonyms:exact_synonym: transcription of nuclear large rRNA transcript from RNA polymerase I promoter;   transcription of nuclear rRNA large Pol I transcript;   transcription of nucleolar large rRNA by RNA polymerase I



show annotations for term's descendants           Sort by:
nucleolar large rRNA transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:24207024) RGD PMID:24207024 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:46,845,571...46,923,209
Ensembl chr 6:41,117,420...41,194,593
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2386185 (PMID:15249688)
GO_Central
RGD
PMID:15249688 GO_REF:0000033 NCBI chr18:56,537,437...56,570,727
Ensembl chr18:54,267,026...54,300,324
JBrowse link
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dedd death effector domain-containing acts_upstream_of_or_within ISO (PMID:9774341) RGD PMID:9774341 NCBI chr13:86,286,341...86,301,789
Ensembl chr13:83,756,108...83,769,332
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO
IBA
UniProtKB:Q9P0M6 (PMID:24071584)
GO_REF:0000033
RGD
GO_Central
PMID:24071584 GO_REF:0000033 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in ISO
IBA
UniProtKB:P0C0S8 (PMID:24071584)
GO_REF:0000033
RGD
GO_Central
PMID:24071584 GO_REF:0000033 NCBI chr20:30,220,975...30,270,652
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:27729611) RGD PMID:27729611 NCBI chr 1:85,757,271...85,765,089
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:113,204,886...113,309,692
Ensembl chr 9:105,833,504...105,862,550
JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO
IEA
(PMID:23203802)
GO_REF:0000107
RGD
Ensembl
PMID:23203802 GO_REF:0000107 NCBI chr17:15,396,691...15,441,648
Ensembl chr17:15,190,265...15,229,541
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) RGD PMID:10791971 NCBI chr 7:65,006,456...65,023,880
Ensembl chr 7:63,121,142...63,138,495
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA
(PMID:24036451)
GO_REF:0000107
RGD
Ensembl
PMID:24036451 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Ncl nucleolin involved_in ISO
IEA
(PMID:24071584)
GO_REF:0000107
RGD
Ensembl
PMID:24071584 GO_REF:0000107 NCBI chr 9:94,447,559...94,456,083
Ensembl chr 9:86,998,019...87,008,136
JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr10:92,621,482...92,641,394
Ensembl chr10:92,121,833...92,141,677
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451) RGD PMID:22368283 PMID:24036451 NCBI chr 1:104,774,562...104,781,757
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) RGD PMID:29065309 NCBI chr 7:19,870,465...19,886,463
Ensembl chr 7:17,982,235...17,998,731
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO
IEA
(PMID:22368283)
GO_REF:0000107
RGD
Ensembl
PMID:22368283 GO_REF:0000107 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 involved_in ISO UniProtKB:Q9NWS0 (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620
JBrowse link
regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 involved_in ISO
ISS
(PMID:24207024)
GO_REF:0000024
RGD
UniProt
PMID:24207024 GO_REF:0000024 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:105,896,476...105,903,172
JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:88,161,342...88,175,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) RGD PMID:23562818 NCBI chr18:24,157,831...24,188,543
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (PMID:23562818) RGD PMID:23562818 NCBI chr16:7,771,311...7,841,895
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:49,061,904...49,068,612
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G Polr1e RNA polymerase I subunit E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:64,075,123...64,090,900
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:55,780,706...55,797,935
Ensembl chr 6:50,053,289...50,070,514
JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:10,317,332...10,321,280
Ensembl chr 7:9,666,716...9,670,643
JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) RGD PMID:23562818 NCBI chr10:87,758,346...87,775,377
Ensembl chr10:87,258,217...87,272,969
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      metabolic process 12181
        biosynthetic process 8648
          macromolecule biosynthetic process 7672
            gene expression 7233
              DNA-templated transcription 3627
                transcription by RNA polymerase I 75
                  nucleolar large rRNA transcription by RNA polymerase I 25
                    negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                    positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                    regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                    transcription elongation by RNA polymerase I + 8
Path 2
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      metabolic process 12181
        primary metabolic process 10757
          nucleobase-containing compound metabolic process 5951
            nucleobase-containing compound biosynthetic process 4862
              nucleic acid biosynthetic process 4583
                RNA biosynthetic process 4467
                  DNA-templated transcription 3627
                    rRNA transcription 38
                      nucleolar large rRNA transcription by RNA polymerase I 25
                        negative regulation of transcription of nucleolar large rRNA by RNA polymerase I 4
                        positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
                        regulation of transcription of nucleolar large rRNA by RNA polymerase I + 15
                        transcription elongation by RNA polymerase I + 8
paths to the root