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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of circadian rhythm
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Accession:GO:0042752 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.

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regulation of circadian rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy1 adenylate cyclase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:20,310,509...20,477,506
Ensembl chrNW_004936478:20,310,503...20,456,141 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO (PMID:29937374) UniProt PMID:29937374 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,316,099...4,321,193
Ensembl chrNW_004936577:4,315,977...4,322,032 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,215,219...4,424,498
Ensembl chrNW_004936600:4,213,956...4,397,987 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,341,455...6,356,677
Ensembl chrNW_004936555:6,341,390...6,356,668 		JBrowse link
G Cdk1 cyclin dependent kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936614:2,300,682...2,313,611
Ensembl chrNW_004936614:2,300,513...2,313,624 		JBrowse link
G Clock clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,929,138...7,994,797
Ensembl chrNW_004936492:7,929,138...7,995,579 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:3,133,849...3,168,472
Ensembl chrNW_004936562:3,133,633...3,168,480 		JBrowse link
G Csnk1d casein kinase 1 delta involved_in ISO (PMID:19414593), (PMID:21930935) UniProt PMID:19414593 PMID:21930935 NCBI chrNW_004936594:5,720,887...5,743,206
Ensembl chrNW_004936594:5,724,406...5,743,180 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:1,710,382...1,742,598
Ensembl chrNW_004936581:1,710,382...1,742,598 		JBrowse link
G Drd4 dopamine receptor D4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936888:468,334...471,254
Ensembl chrNW_004936888:468,403...471,205 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,024,077...5,069,152
Ensembl chrNW_004936527:5,024,068...5,063,939 		JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:4,259,066...4,280,501
Ensembl chrNW_004936511:4,258,548...4,283,285 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO (PMID:28556462) UniProt PMID:28556462 NCBI chrNW_004936536:6,730,070...6,893,818
Ensembl chrNW_004936536:6,730,062...6,894,303 		JBrowse link
G Hdac3 histone deacetylase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,530,546...12,546,556
Ensembl chrNW_004936504:12,530,528...12,546,556 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:2,401,053...2,425,989
Ensembl chrNW_004936530:2,401,043...2,454,466 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:2,096,370...2,115,135
Ensembl chrNW_004936738:2,096,370...2,113,604 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:5,236,175...5,238,689
Ensembl chrNW_004936532:5,236,037...5,238,881 		JBrowse link
G Kdm2a lysine demethylase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,466,427...2,576,623
Ensembl chrNW_004936599:2,466,214...2,576,623 		JBrowse link
G Klf10 KLF transcription factor 10 involved_in ISO PMID:20070857 UniProt PMID:20070857 RGD:10047352 NCBI chrNW_004936470:40,980,487...40,986,880
Ensembl chrNW_004936470:40,980,487...40,986,885 		JBrowse link
G LOC101967743 casein kinase I involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,904,622...2,925,904
Ensembl chrNW_004936492:2,907,015...2,928,418 		JBrowse link
G Maged1 MAGE family member D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936909:493,998...592,649
Ensembl chrNW_004936909:585,206...592,644 		JBrowse link
G Magel2 MAGE family member L2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936805:882,296...886,442
Ensembl chrNW_004936805:882,273...886,475 		JBrowse link
G Mapk10 mitogen-activated protein kinase 10 involved_in ISO (PMID:22441692) UniProt PMID:22441692 NCBI chrNW_004936896:228,908...539,836
Ensembl chrNW_004936896:230,494...540,071 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (PMID:22441692) UniProt PMID:22441692 NCBI chrNW_004936728:1,775,746...1,893,895
Ensembl chrNW_004936728:1,775,641...1,893,907 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:551,678...602,027
Ensembl chrNW_004936739:551,629...602,047 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Noct nocturnin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:8,504,518...8,509,376
Ensembl chrNW_004936535:8,505,834...8,507,928 		JBrowse link
G Nono non-POU domain containing octamer binding involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:322,413...343,126
Ensembl chrNW_004936762:321,280...341,537 		JBrowse link
G Npas2 neuronal PAS domain protein 2 involved_in ISO (PMID:24048828) UniProt PMID:24048828 NCBI chrNW_004936661:96,312...176,395
Ensembl chrNW_004936661:95,752...210,097 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867 		JBrowse link
G Nr1d2 nuclear receptor subfamily 1 group D member 2 involved_in ISO (PMID:29533925)
(PMID:23221024) 		UniProt PMID:23221024 PMID:29533925 NCBI chrNW_004936473:15,624,597...15,646,875 JBrowse link
G Opn4 opsin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936804:261,210...272,449
Ensembl chrNW_004936804:263,720...272,132 		JBrowse link
G Per1 period circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,366,883...1,382,138
Ensembl chrNW_004936595:1,366,875...1,382,170 		JBrowse link
G Per2 period circadian regulator 2 involved_in ISO (PMID:11395012), (PMID:19917250) UniProt PMID:11395012 PMID:19917250 NCBI chrNW_004936525:221,601...263,284
Ensembl chrNW_004936525:221,510...263,295 		JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:3,672,445...3,725,645
Ensembl chrNW_004936629:3,672,460...3,725,626 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO (PMID:19041764) UniProt PMID:19041764 NCBI chrNW_004936602:1,230,907...1,368,588
Ensembl chrNW_004936602:1,230,907...1,304,743 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:4,881,230...5,488,208
Ensembl chrNW_004936477:5,199,881...5,488,226 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,345,982...2,348,494
Ensembl chrNW_004936599:2,344,552...2,348,494 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:3,981,364...4,002,083
Ensembl chrNW_004936493:3,981,370...4,002,667 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,631,794...3,651,754
Ensembl chrNW_004936558:3,630,561...3,651,786 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:1,817,051...1,843,376
Ensembl chrNW_004936518:1,804,969...1,843,380 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:4,872,360...4,939,873
Ensembl chrNW_004936522:4,875,046...4,939,879 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:4,185,712...4,240,680
Ensembl chrNW_004936628:4,185,706...4,238,451 		JBrowse link
G Pspc1 paraspeckle component 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936720:1,876,726...1,941,705
Ensembl chrNW_004936720:1,876,475...1,967,662 		JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (PMID:23172836) UniProt PMID:23172836 NCBI chrNW_004936532:7,142,580...7,284,722
Ensembl chrNW_004936532:7,145,882...7,286,244 		JBrowse link
G Rora RAR related orphan receptor A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:21,402,056...21,567,908
Ensembl chrNW_004936471:21,400,589...22,069,643 		JBrowse link
G Rorb RAR related orphan receptor B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:10,294,530...10,473,070
Ensembl chrNW_004936503:10,295,167...10,470,813 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO (PMID:22966205) UniProt PMID:22966205 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936758:1,115,980...1,132,225
Ensembl chrNW_004936758:1,116,056...1,213,442 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:2,953,837...3,021,430
Ensembl chrNW_004936540:2,953,831...3,021,485 		JBrowse link
G Srrd SRR1 domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:1,104,833...1,112,854
Ensembl chrNW_004936657:1,104,833...1,112,374 		JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:27123980) UniProt PMID:27123980 NCBI chrNW_004936474:90,813...103,713 JBrowse link
G Timeless timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Top2a DNA topoisomerase II alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,441,463...15,465,692
Ensembl chrNW_004936490:15,441,575...15,466,978 		JBrowse link
G Ube3a ubiquitin protein ligase E3A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:41,187,665...41,290,345
Ensembl chrNW_004936471:41,187,612...41,283,517 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215
Ensembl chrNW_004936530:7,694,379...7,724,684 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,649,808...7,732,731
Ensembl chrNW_004936502:7,649,842...7,735,382 		JBrowse link
entrainment of circadian clock term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,038,345...10,039,345
Ensembl chrNW_004936521:10,038,765...10,039,223 		JBrowse link
G Chrm1 cholinergic receptor muscarinic 1 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936581:387,939...400,740
Ensembl chrNW_004936581:387,705...400,740 		JBrowse link
G Clock clock circadian regulator ISO RGD PMID:10095082 RGD:632379 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Gna11 G protein subunit alpha 11 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936588:1,770,777...1,789,143
Ensembl chrNW_004936588:1,770,771...1,789,170 		JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:5,236,175...5,238,689
Ensembl chrNW_004936532:5,236,037...5,238,881 		JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,467,776...2,683,794
Ensembl chrNW_004936497:2,467,684...2,683,799 		JBrowse link
G Sox14 SRY-box transcription factor 14 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:160,638...162,662
Ensembl chrNW_004936540:161,124...161,846 		JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,038,345...10,039,345
Ensembl chrNW_004936521:10,038,765...10,039,223 		JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,316,099...4,321,193
Ensembl chrNW_004936577:4,315,977...4,322,032 		JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,551,621...2,625,327
Ensembl chrNW_004936596:2,551,506...2,625,327 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:7,929,138...7,994,797
Ensembl chrNW_004936492:7,929,138...7,995,579 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:3,133,849...3,168,472
Ensembl chrNW_004936562:3,133,633...3,168,480 		JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:4,259,066...4,280,501
Ensembl chrNW_004936511:4,258,548...4,283,285 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:5,236,175...5,238,689
Ensembl chrNW_004936532:5,236,037...5,238,881 		JBrowse link
G LOC101973554 F-box/LRR-repeat protein 21 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936597:3,037,282...3,045,145 JBrowse link
G LOC101976473 RNA-binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,960,066...2,968,092
Ensembl chrNW_004936599:2,960,063...2,968,210 		JBrowse link
G Mta1 metastasis associated 1 involved_in ISO (PMID:24089055) UniProt PMID:24089055 NCBI chrNW_004936621:117,785...140,917
Ensembl chrNW_004936621:117,785...140,926 		JBrowse link
G Nr2f6 nuclear receptor subfamily 2 group F member 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:3,596,720...3,606,283
Ensembl chrNW_004936596:3,597,651...3,605,836 		JBrowse link
G Opn5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:12,740,038...12,766,310
Ensembl chrNW_004936476:12,722,563...12,766,512 		JBrowse link
G Pde6b phosphodiesterase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,418,037...22,472,251
Ensembl chrNW_004936477:22,417,453...22,472,185 		JBrowse link
G Per1 period circadian regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:1,366,883...1,382,138
Ensembl chrNW_004936595:1,366,875...1,382,170 		JBrowse link
G Per2 period circadian regulator 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:221,601...263,284
Ensembl chrNW_004936525:221,510...263,295 		JBrowse link
G Per3 period circadian regulator 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936623:2,291,211...2,362,693
Ensembl chrNW_004936623:2,290,614...2,336,634 		JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,345,982...2,348,494
Ensembl chrNW_004936599:2,344,552...2,348,494 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in ISO (PMID:21712997) UniProt PMID:21712997 NCBI chrNW_004936493:3,981,364...4,002,083
Ensembl chrNW_004936493:3,981,370...4,002,667 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,631,794...3,651,754
Ensembl chrNW_004936558:3,630,561...3,651,786 		JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,934,951...2,945,753
Ensembl chrNW_004936599:2,935,397...2,945,345 		JBrowse link
G Sik1 salt inducible kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:774,749...784,326
Ensembl chrNW_004936500:774,092...784,330 		JBrowse link
G Tp53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,284,243...4,310,545
Ensembl chrNW_004936542:4,285,819...4,307,925 		JBrowse link
negative regulation of circadian rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cipc CLOCK interacting pacemaker involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936488:5,938,328...5,954,246
Ensembl chrNW_004936488:5,938,170...5,953,812 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,929,138...7,994,797
Ensembl chrNW_004936492:7,929,138...7,995,579 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:3,133,849...3,168,472
Ensembl chrNW_004936562:3,133,633...3,168,480 		JBrowse link
G Pasd1 PAS domain containing repressor 1 involved_in ISO (PMID:25936801) UniProt PMID:25936801
G Per2 period circadian regulator 2 involved_in ISO (PMID:19605937) UniProt PMID:19605937 NCBI chrNW_004936525:221,601...263,284
Ensembl chrNW_004936525:221,510...263,295 		JBrowse link
G Piwil2 piwi like RNA-mediated gene silencing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,078,681...6,133,184
Ensembl chrNW_004936555:6,078,681...6,133,020 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO (PMID:21680841) UniProt PMID:21680841 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,206,084...34,260,538
Ensembl chrNW_004936471:34,204,524...34,260,564 		JBrowse link
negative regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO RGD PMID:19066225 RGD:5128864 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Adora1 adenosine A1 receptor ISO RGD PMID:19491711 RGD:2317916 NCBI chrNW_004936567:1,430,128...1,508,626
Ensembl chrNW_004936567:1,429,817...1,462,532 		JBrowse link
negative regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrl ghrelin and obestatin prepropeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:3,037,862...3,044,863
Ensembl chrNW_004936602:3,038,549...3,042,506 		JBrowse link
negative regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor ISO in the sleep-promoting area of the lateral preoptic area of the brain RGD PMID:16109808 RGD:1625234 NCBI chrNW_004936567:1,430,128...1,508,626
Ensembl chrNW_004936567:1,429,817...1,462,532 		JBrowse link
G Drd1 dopamine receptor D1 ISO RGD PMID:12944496 RGD:1581422 NCBI chrNW_004936609:790,647...795,187
Ensembl chrNW_004936609:792,276...793,613 		JBrowse link
G Drd2 dopamine receptor D2 ISO RGD PMID:12944496 RGD:1581422 NCBI chrNW_004936612:1,094,686...1,154,149
Ensembl chrNW_004936612:1,094,680...1,154,798 		JBrowse link
negative regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptger3 prostaglandin E receptor 3 ISO RGD PMID:10923657 RGD:10043386 NCBI chrNW_004936591:1,174,364...1,250,233
Ensembl chrNW_004936591:1,174,069...1,249,410 		JBrowse link
negative regulation of locomotor rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lepr leptin receptor ISO RGD PMID:16982424 RGD:10412019 NCBI chrNW_004936591:5,771,371...5,846,177
Ensembl chrNW_004936591:5,774,326...5,836,444 		JBrowse link
positive regulation of circadian rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmal1 basic helix-loop-helix ARNT like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:5,167,611...5,239,128
Ensembl chrNW_004936528:5,164,481...5,239,128 		JBrowse link
G Bmal2 basic helix-loop-helix ARNT like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936548:181,793...241,050
Ensembl chrNW_004936548:182,075...225,856 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,215,219...4,424,498
Ensembl chrNW_004936600:4,213,956...4,397,987 		JBrowse link
G Clock clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Fbxw11 F-box and WD repeat domain containing 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936609:3,256,658...3,341,918
Ensembl chrNW_004936609:3,256,657...3,341,994 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Mtnr1b melatonin receptor 1B ISO RGD PMID:12643943 RGD:9588678 NCBI chrNW_004936674:1,703,814...1,713,860
Ensembl chrNW_004936674:1,703,814...1,713,860 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:10,517,488...10,520,567
Ensembl chrNW_004936494:10,517,488...10,520,566 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 ISO RGD PMID:18946026 RGD:10448985 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867 		JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 ISO RGD PMID:12930792 RGD:7777105 NCBI chrNW_004936787:330,390...1,491,994
Ensembl chrNW_004936787:332,342...1,491,285 		JBrowse link
G Rora RAR related orphan receptor A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:21,402,056...21,567,908
Ensembl chrNW_004936471:21,400,589...22,069,643 		JBrowse link
G Rorc RAR related orphan receptor C involved_in ISO (PMID:22753030) UniProt PMID:22753030 NCBI chrNW_004936580:1,997,640...2,020,649
Ensembl chrNW_004936580:1,997,640...2,020,649 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,691,872...18,749,217
Ensembl chrNW_004936474:18,691,835...18,749,235 		JBrowse link
G Timeless timeless circadian regulator ISO RGD PMID:14564007 RGD:734503 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
positive regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrh growth hormone releasing hormone ISO RGD PMID:19889861 PMID:20237285 RGD:10401262 RGD:2325188 NCBI chrNW_004936561:3,946,256...3,954,472
Ensembl chrNW_004936561:3,950,340...3,952,405 		JBrowse link
G Ghrhr growth hormone releasing hormone receptor ISO RGD PMID:20237285 RGD:10401262 NCBI chrNW_004936478:7,188,826...7,202,854
Ensembl chrNW_004936478:7,188,826...7,201,932 		JBrowse link
G Ghrl ghrelin and obestatin prepropeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:3,037,862...3,044,863
Ensembl chrNW_004936602:3,038,549...3,042,506 		JBrowse link
G Mtnr1b melatonin receptor 1B ISO RGD PMID:19429170 PMID:22171046 RGD:9588660 RGD:9588665 NCBI chrNW_004936674:1,703,814...1,713,860
Ensembl chrNW_004936674:1,703,814...1,713,860 		JBrowse link
G Npy2r neuropeptide Y receptor Y2 ISO RGD PMID:16378653 RGD:1642507 NCBI chrNW_004936576:1,932,526...1,939,560
Ensembl chrNW_004936576:1,932,870...1,938,703 		JBrowse link
G Ptger3 prostaglandin E receptor 3 ISO RGD PMID:10923657 RGD:10043386 NCBI chrNW_004936591:1,174,364...1,250,233
Ensembl chrNW_004936591:1,174,069...1,249,410 		JBrowse link
G Ptger4 prostaglandin E receptor 4 ISO RGD PMID:10923657 RGD:10043386 NCBI chrNW_004936518:1,903,636...1,916,746
Ensembl chrNW_004936518:1,903,725...1,916,746 		JBrowse link
positive regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrh growth hormone releasing hormone NOT|involved_in ISO (PMID:15538933) BHF-UCL PMID:15538933 NCBI chrNW_004936561:3,946,256...3,954,472
Ensembl chrNW_004936561:3,950,340...3,952,405 		JBrowse link
G Pmch pro-melanin concentrating hormone ISO RGD PMID:12964948 RGD:1642489 NCBI chrNW_004936492:11,947,489...11,948,896
Ensembl chrNW_004936492:11,947,489...11,948,896 		JBrowse link
G Uts2 urotensin 2 ISO RGD PMID:15944374 RGD:2306844 NCBI chrNW_004936623:2,339,259...2,345,717
Ensembl chrNW_004936623:2,340,778...2,345,700 		JBrowse link
G Uts2r urotensin 2 receptor ISO RGD PMID:15944374 RGD:2306844 NCBI chrNW_004936923:24,952...31,083 JBrowse link
positive regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2a adenosine A2a receptor ISO in the sleep-promoting area of the lateral preoptic area of the brain RGD PMID:16109808 RGD:1625234 NCBI chrNW_004936619:597,970...618,564
Ensembl chrNW_004936619:608,441...616,779 		JBrowse link
positive regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936703:951,935...1,415,991
Ensembl chrNW_004936703:758,647...1,414,185 		JBrowse link
G Nps neuropeptide S ISO RGD PMID:22300983 RGD:9831203 NCBI chrNW_004936486:15,172,068...15,175,568
Ensembl chrNW_004936486:15,172,256...15,175,339 		JBrowse link
G Uts2 urotensin 2 ISO RGD PMID:15944374 RGD:2306844 NCBI chrNW_004936623:2,339,259...2,345,717
Ensembl chrNW_004936623:2,340,778...2,345,700 		JBrowse link
G Uts2r urotensin 2 receptor ISO RGD PMID:15944374 RGD:2306844 NCBI chrNW_004936923:24,952...31,083 JBrowse link
regulation of circadian sleep/wake cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,206,194...15,213,858
Ensembl chrNW_004936490:15,206,191...15,213,867 		JBrowse link
regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cartpt CART prepropeptide ISO RGD PMID:20116848 RGD:597811019 NCBI chrNW_004936549:4,717,337...4,719,523
Ensembl chrNW_004936549:4,717,771...4,719,395 		JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (PMID:15215293) MGI PMID:15215293 NCBI chrNW_004936580:4,165,255...4,179,285
Ensembl chrNW_004936580:4,166,619...4,186,443 		JBrowse link
G Il6 interleukin 6 ISO RGD PMID:12667648 RGD:1358315 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:2,007,577...2,019,520
Ensembl chrNW_004936704:2,007,577...2,017,764 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:34798058) UniProt PMID:34798058 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cartpt CART prepropeptide ISO RGD PMID:20116848 RGD:597811019 NCBI chrNW_004936549:4,717,337...4,719,523
Ensembl chrNW_004936549:4,717,771...4,719,395 		JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (PMID:15215293) MGI PMID:15215293 NCBI chrNW_004936580:4,165,255...4,179,285
Ensembl chrNW_004936580:4,166,619...4,186,443 		JBrowse link
regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO RGD PMID:11038259 RGD:631747 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Adrb1 adrenoceptor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:4,400,467...4,401,588
Ensembl chrNW_004936486:4,399,915...4,403,149 		JBrowse link
G Cort cortistatin ISO RGD PMID:8622767 RGD:727760 NCBI chrNW_004936623:4,287,175...4,289,347 JBrowse link
G Csf2 colony stimulating factor 2 ISO RGD PMID:12047622 RGD:10449529 NCBI chrNW_004936647:3,081,896...3,083,864
Ensembl chrNW_004936647:3,081,896...3,083,864 		JBrowse link
G Drd3 dopamine receptor D3 ISO RGD PMID:15913875 RGD:1625069 NCBI chrNW_004936536:1,580,732...1,616,726
Ensembl chrNW_004936536:1,580,732...1,616,725 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:2,354,301...2,425,140
Ensembl chrNW_004936566:2,354,441...2,425,176 		JBrowse link
G Nmu neuromedin U involved_in ISO PMID:20233222 UniProt PMID:20233222 RGD:12911001 Ensembl chrNW_004936482:17,936,467...17,961,711 JBrowse link
G Per3 period circadian regulator 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,291,211...2,362,693
Ensembl chrNW_004936623:2,290,614...2,336,634 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 ISO RGD PMID:11145837 RGD:724610 NCBI chrNW_004936706:2,317,137...2,320,993
Ensembl chrNW_004936706:2,315,132...2,320,796 		JBrowse link
G Ptgds prostaglandin D2 synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:961,246...964,584
Ensembl chrNW_004936669:961,034...965,136 		JBrowse link
regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cartpt CART prepropeptide ISO RGD PMID:20116848 RGD:597811019 NCBI chrNW_004936549:4,717,337...4,719,523
Ensembl chrNW_004936549:4,717,771...4,719,395 		JBrowse link
G Hcrtr2 hypocretin receptor 2 involved_in ISO (PMID:11282968) UniProt PMID:11282968 NCBI chrNW_004936476:5,838,663...5,933,174
Ensembl chrNW_004936476:5,838,830...5,933,207 		JBrowse link
G Ptger3 prostaglandin E receptor 3 ISO RGD PMID:10923657 RGD:10043386 NCBI chrNW_004936591:1,174,364...1,250,233
Ensembl chrNW_004936591:1,174,069...1,249,410 		JBrowse link
G Ptger4 prostaglandin E receptor 4 ISO RGD PMID:10923657 RGD:10043386 NCBI chrNW_004936518:1,903,636...1,916,746
Ensembl chrNW_004936518:1,903,725...1,916,746 		JBrowse link
regulation of locomotor rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342 		JBrowse link
G Oprl1 opioid related nociceptin receptor 1 ISO RGD PMID:16310969 RGD:9835023 NCBI chrNW_004936514:11,264,392...11,273,584
Ensembl chrNW_004936514:11,258,335...11,273,592 		JBrowse link
G Zfhx3 zinc finger homeobox 3 involved_in ISO (PMID:26232227) UniProt PMID:26232227 NCBI chrNW_004936475:21,005,242...21,235,992
Ensembl chrNW_004936475:21,080,302...21,231,544 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    regulation of biological process 11034
      regulation of circadian rhythm 127
        entrainment of circadian clock + 29
        negative regulation of circadian rhythm + 15
        positive regulation of circadian rhythm + 26
        regulation of circadian sleep/wake cycle + 33
        regulation of locomotor rhythm + 4
        temperature compensation of the circadian clock 0
Path 2
Term Annotations click to browse term
  biological_process 17413
    rhythmic process 400
      circadian rhythm 270
        regulation of circadian rhythm 127
          entrainment of circadian clock + 29
          negative regulation of circadian rhythm + 15
          positive regulation of circadian rhythm + 26
          regulation of circadian sleep/wake cycle + 33
          regulation of locomotor rhythm + 4
          temperature compensation of the circadian clock 0
paths to the root