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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of circadian rhythm
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Accession:GO:0042752 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.


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regulation of circadian rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy1 adenylate cyclase 1 ISO (MGI:5518489|PMID:24048828) RGD PMID:24048828 MGI:5518489 NCBI chr14:87,311,970...87,429,880
Ensembl chr14:87,312,203...87,421,659
JBrowse link
G Atg7 autophagy related 7 ISS
ISO
GO_REF:0000024
(MGI:6208175|PMID:29937374)
UniProt
RGD
PMID:29937374 GO_REF:0000024, MGI:6208175 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 ISS
ISO
GO_REF:0000024
(MGI:6282958|PMID:30012868)
UniProt
RGD
PMID:30012868 GO_REF:0000024, MGI:6282958 NCBI chr 4:140,703,619...140,709,319
Ensembl chr 4:140,703,619...140,709,319
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO (PMID:15917222) RGD PMID:15917222 NCBI chr 1:265,100,094...265,270,263
Ensembl chr 1:265,157,379...265,269,837
JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 ISO (MGI:5495335|PMID:23398316) RGD PMID:23398316 MGI:5495335 NCBI chr15:51,818,887...51,834,443
Ensembl chr15:51,818,897...51,834,030
JBrowse link
G Cdk1 cyclin-dependent kinase 1 ISS
ISO
GO_REF:0000024
(PMID:27238018)
UniProt
RGD
PMID:27238018 GO_REF:0000024 NCBI chr20:20,576,341...20,591,510
Ensembl chr20:20,576,377...20,591,549
JBrowse link
G Clock clock circadian regulator ISS
ISO
IEA
GO_REF:0000024
(MGI:6282958|PMID:30012868)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30012868 GO_REF:0000024, GO_REF:0000107, MGI:6282958 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:12409294 RGD:633667 NCBI chr 9:71,229,753...71,298,994
Ensembl chr 9:71,230,108...71,293,435
JBrowse link
G Crem cAMP responsive element modulator IEP RGD PMID:15936880 RGD:1582464 NCBI chr17:57,021,704...57,090,888
Ensembl chr17:57,031,766...57,090,888
JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISS
ISO
GO_REF:0000024
UniProtKB:Q9R194 (MGI:1334825|PMID:10217146), (MGI:4366197|PMID:19833968), (MGI:4947326|PMID:21236481), (MGI:5490394|PMID:23616524), (MGI:5567898|PMID:23575670), (MGI:5908518|PMID:26431207)
UniProt
RGD
PMID:10217146, PMID:19833968, PMID:21236481, PMID:23575670, PMID:23616524, PMID:26431207 GO_REF:0000024, MGI:1334825, MGI:4366197, MGI:4947326, MGI:5490394, MGI:5567898, MGI:5908518 NCBI chr 7:24,534,593...24,634,098
Ensembl chr 7:24,534,615...24,634,097
JBrowse link
G Cry2 cryptochrome circadian regulator 2 ISS
ISO
GO_REF:0000024
UniProtKB:P97784 (MGI:1334825|PMID:10217146), (MGI:5490394|PMID:23616524), (MGI:5567898|PMID:23575670)
UniProt
RGD
PMID:10217146, PMID:23575670, PMID:23616524 GO_REF:0000024, MGI:1334825, MGI:5490394, MGI:5567898 NCBI chr 3:81,314,151...81,344,143
Ensembl chr 3:81,314,149...81,344,110
JBrowse link
G Csnk1d casein kinase 1, delta ISS
ISO
IBA
GO_REF:0000024
(MGI:3849793|PMID:19414593), (MGI:5294280|PMID:21930935)
PMID:21873635
UniProt
RGD
PMID:19414593, PMID:21930935, PMID:21873635 GO_REF:0000024, MGI:3849793, MGI:5294280, RGD:13792537 NCBI chr10:110,147,786...110,182,413
Ensembl chr10:110,148,600...110,182,408
JBrowse link
G Csnk1e casein kinase 1, epsilon ISO (MGI:5294280|PMID:21930935) RGD PMID:21930935 MGI:5294280 NCBI chr 7:120,651,976...120,675,559
Ensembl chr 7:120,651,881...120,672,359
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:5908518|PMID:26431207)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26431207 GO_REF:0000024, GO_REF:0000107, MGI:5908518 NCBI chr 1:226,657,561...226,683,356
Ensembl chr 1:226,657,561...226,683,347
JBrowse link
G Drd4 dopamine receptor D4 IEA
ISO
ISS
GO_REF:0000107
(MGI:5518489|PMID:24048828)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24048828 GO_REF:0000024, GO_REF:0000107, MGI:5518489 NCBI chr 1:214,278,296...214,282,818
Ensembl chr 1:214,278,296...214,281,483
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO (PMID:16717091)
(MGI:3694308|PMID:16717091)
RGD PMID:16717091 MGI:3694308 NCBI chr 4:77,284,404...77,347,011
Ensembl chr 4:77,284,404...77,347,011
JBrowse link
G Fbxl3 F-box and leucine-rich repeat protein 3 ISO (PMID:17463251)
(MGI:3710694|PMID:17463252), (MGI:3715674|PMID:17462724), (MGI:5490394|PMID:23616524)
RGD PMID:17462724, PMID:17463251, PMID:17463252, PMID:23616524 MGI:3710694, MGI:3715674, MGI:5490394 NCBI chr15:93,647,307...93,667,395
Ensembl chr15:93,647,310...93,667,395
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISS
ISO
GO_REF:0000024
(MGI:6282935|PMID:27238018)
(PMID:27238018)
UniProt
RGD
PMID:27238018 GO_REF:0000024, MGI:6282935 NCBI chr 2:184,230,191...184,309,805
Ensembl chr 2:184,231,260...184,309,664
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISS
ISO
GO_REF:0000024
(MGI:6294161|PMID:28556462)
UniProt
RGD
PMID:28556462 GO_REF:0000024, MGI:6294161 NCBI chr11:65,060,884...65,208,842
Ensembl chr11:65,066,235...65,209,268
JBrowse link
G Hdac3 histone deacetylase 3 ISS
ISO
GO_REF:0000024
(MGI:5882311|PMID:26776516)
UniProt
RGD
PMID:26776516 GO_REF:0000024, MGI:5882311 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha ISS
ISO
IEA
GO_REF:0000024
(MGI:6272229|PMID:30530698)
(PMID:30530698)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30530698 GO_REF:0000024, GO_REF:0000107, MGI:6272229 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO
ISS
(PMID:24423872)
GO_REF:0000024
RGD
UniProt
PMID:24423872 GO_REF:0000024 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Id2 inhibitor of DNA binding 2 ISS
ISO
GO_REF:0000024
(MGI:3838062|PMID:19217292)
UniProt
RGD
PMID:19217292 GO_REF:0000024, MGI:3838062 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Kdm2a lysine demethylase 2A ISO (PMID:26037310) RGD PMID:26037310 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294
JBrowse link
G Klf10 Kruppel-like factor 10 IMP PMID:20070857 UniProt PMID:20070857 RGD:10047352 NCBI chr 7:77,156,010...77,162,096
Ensembl chr 7:77,156,006...77,162,148
JBrowse link
G Maged1 MAGE family member D1 ISO (MGI:5508569|PMID:20300063) RGD PMID:20300063 MGI:5508569 NCBI chr  X:63,803,194...63,809,715
Ensembl chr  X:63,803,189...63,809,861
JBrowse link
G Magel2 MAGE family member L2 ISO (MGI:5607219|PMID:22208286) RGD PMID:22208286 MGI:5607219 NCBI chr 1:123,015,404...123,019,945
Ensembl chr 1:123,015,746...123,019,522
JBrowse link
G Mapk10 mitogen activated protein kinase 10 ISS
ISO
GO_REF:0000024
(MGI:5431019|PMID:22441692)
UniProt
RGD
PMID:22441692 GO_REF:0000024, MGI:5431019 NCBI chr14:8,079,955...8,371,508
Ensembl chr14:8,080,275...8,368,254
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISS
ISO
GO_REF:0000024
(MGI:5431019|PMID:22441692)
UniProt
RGD
PMID:22441692 GO_REF:0000024, MGI:5431019 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IEA
ISO
ISS
GO_REF:0000107
(MGI:5431019|PMID:22441692)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22441692 GO_REF:0000024, GO_REF:0000107, MGI:5431019 NCBI chr10:35,333,859...35,374,364
Ensembl chr10:35,333,859...35,374,355
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISS
ISO
GO_REF:0000024
(MGI:6159528|PMID:29750810)
UniProt
RGD
PMID:29750810 GO_REF:0000024, MGI:6159528 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Noct nocturnin ISS
ISO
GO_REF:0000024
(MGI:5308514|PMID:22073225)
UniProt
RGD
PMID:22073225 GO_REF:0000024, MGI:5308514 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Nono non-POU domain containing, octamer-binding ISS
ISO
GO_REF:0000024
(MGI:5444785|PMID:22966205)
UniProt
RGD
PMID:22966205 GO_REF:0000024, MGI:5444785 NCBI chr  X:71,324,365...71,342,225
Ensembl chr  X:71,324,365...71,342,225
JBrowse link
G Npas2 neuronal PAS domain protein 2 ISO (MGI:5518489|PMID:24048828) RGD PMID:24048828 MGI:5518489 NCBI chr 9:45,901,262...46,081,880
Ensembl chr 9:45,901,741...46,081,880
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IDA
ISO
PMID:22425774
(MGI:4360821|PMID:19721697), (MGI:4429726|PMID:20159955), (MGI:6162161|PMID:29533925)
RGD PMID:19721697, PMID:20159955, PMID:29533925, PMID:22425774 MGI:4360821, MGI:4429726, MGI:6162161, RGD:8553819 NCBI chr10:86,683,875...86,690,815
Ensembl chr10:86,683,875...86,690,815
JBrowse link
G Nr1d2 nuclear receptor subfamily 1, group D, member 2 ISS
ISO
GO_REF:0000024
(MGI:5526909|PMID:23221024), (MGI:6162161|PMID:29533925)
UniProt
RGD
PMID:23221024, PMID:29533925 GO_REF:0000024, MGI:5526909, MGI:6162161 NCBI chr15:8,730,871...8,757,165
Ensembl chr15:8,730,871...8,757,165
JBrowse link
G Opn4 opsin 4 ISS
ISO
GO_REF:0000024
(MGI:2667269|PMID:12808468)
UniProt
RGD
PMID:12808468 GO_REF:0000024, MGI:2667269 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Per1 period circadian regulator 1 ISS
ISO
GO_REF:0000024
(MGI:1935010|PMID:11395012)
UniProt
RGD
PMID:11395012 GO_REF:0000024, MGI:1935010 NCBI chr10:55,681,761...55,696,557
Ensembl chr10:55,687,050...55,695,994
JBrowse link
G Per2 period circadian regulator 2 ISS
ISO
GO_REF:0000024
(MGI:1935010|PMID:11395012), (MGI:4410390|PMID:19917250)
UniProt
RGD
PMID:11395012, PMID:19917250 GO_REF:0000024, MGI:1935010, MGI:4410390 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:5314433|PMID:22274616) RGD PMID:22274616 MGI:5314433 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISS
ISO
GO_REF:0000024
(MGI:4429726|PMID:20159955)
UniProt
RGD
PMID:20159955 GO_REF:0000024, MGI:4429726 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISS
ISO
GO_REF:0000024
(MGI:3830801|PMID:19041764)
UniProt
RGD
PMID:19041764 GO_REF:0000024, MGI:3830801 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISS
ISO
GO_REF:0000024
(MGI:3715412|PMID:17476214)
UniProt
RGD
PMID:17476214 GO_REF:0000024, MGI:3715412 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
ISS
(PMID:21712997)
(MGI:5086036|PMID:21712997), (MGI:5294280|PMID:21930935)
GO_REF:0000024
RGD
UniProt
PMID:21712997, PMID:21930935 GO_REF:0000024, MGI:5086036, MGI:5294280 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IBA
ISS
(PMID:21712997)
(MGI:5086036|PMID:21712997), (MGI:5294280|PMID:21930935)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21712997, PMID:21930935, PMID:21873635 GO_REF:0000024, MGI:5086036, MGI:5294280, RGD:13792537 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO
ISS
(PMID:21712997)
(MGI:5086036|PMID:21712997), (MGI:5294280|PMID:21930935)
GO_REF:0000024
RGD
UniProt
PMID:21712997, PMID:21930935 GO_REF:0000024, MGI:5086036, MGI:5294280 NCBI chr12:39,864,302...39,882,030
Ensembl chr12:39,864,295...39,882,030
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISS
ISO
GO_REF:0000024
(MGI:4366197|PMID:19833968)
UniProt
RGD
PMID:19833968 GO_REF:0000024, MGI:4366197 NCBI chr 2:54,857,688...54,893,404
Ensembl chr 2:54,857,688...54,893,404
JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:4366197|PMID:19833968)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19833968 GO_REF:0000024, GO_REF:0000107, MGI:4366197 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569
JBrowse link
G Prkcg protein kinase C, gamma ISS
ISO
GO_REF:0000024
(MGI:5467682|PMID:23185022)
UniProt
RGD
PMID:23185022 GO_REF:0000024, MGI:5467682 NCBI chr 1:64,407,098...64,433,698
Ensembl chr 1:64,407,114...64,433,636
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (MGI:5554971|PMID:24158435) RGD PMID:24158435 MGI:5554971 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:23723244) RGD PMID:23723244 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Pspc1 paraspeckle component 1 ISS
ISO
GO_REF:0000024
(MGI:5444785|PMID:22966205)
UniProt
RGD
PMID:22966205 GO_REF:0000024, MGI:5444785 NCBI chr15:36,946,914...37,030,273
Ensembl chr15:36,950,257...37,030,281
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 ISS
ISO
GO_REF:0000024
(MGI:5567901|PMID:23172836)
(PMID:23172836)
UniProt
RGD
PMID:23172836 GO_REF:0000024, MGI:5567901 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Rora RAR-related orphan receptor A ISO (MGI:5567901|PMID:23172836) RGD PMID:23172836 MGI:5567901 NCBI chr 8:75,515,886...75,616,477
Ensembl chr 8:75,516,904...75,607,212
JBrowse link
G Rorb RAR-related orphan receptor B IEA
ISO
ISS
GO_REF:0000107
(MGI:3712731|PMID:17303680)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17303680 GO_REF:0000024, GO_REF:0000107, MGI:3712731 NCBI chr 1:234,252,757...234,442,597
Ensembl chr 1:234,252,757...234,435,839
JBrowse link
G Sfpq splicing factor proline and glutamine rich ISO (MGI:5444785|PMID:22966205) RGD PMID:22966205 MGI:5444785 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 ISS
ISO
GO_REF:0000024
(MGI:6241928|PMID:26392558)
(PMID:26392558)
UniProt
RGD
PMID:26392558 GO_REF:0000024, MGI:6241928 NCBI chr 2:148,874,151...148,891,900
Ensembl chr 2:148,874,151...148,891,900
JBrowse link
G Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 ISO (PMID:26392558) RGD PMID:26392558 NCBI chr 8:104,840,939...104,912,959
Ensembl chr 8:104,840,940...104,912,959
JBrowse link
G Srrd SRR1 domain containing ISO (MGI:6282940|PMID:28802827) RGD PMID:28802827 MGI:6282940 NCBI chr12:50,315,876...50,321,488
Ensembl chr12:50,315,933...50,321,144
JBrowse link
G Tardbp TAR DNA binding protein ISO (MGI:6253084|PMID:27123980) RGD PMID:27123980 MGI:6253084 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Timeless timeless circadian regulator IEA
ISO
ISS
GO_REF:0000107
(MGI:5578016|PMID:23418588)
GO_REF:0000024
(PMID:23418588)
Ensembl
RGD
UniProt
PMID:23418588 GO_REF:0000024, GO_REF:0000107, MGI:5578016 NCBI chr 7:2,643,288...2,667,329
Ensembl chr 7:2,643,288...2,667,628
JBrowse link
G Top2a DNA topoisomerase II alpha IEA
ISO
ISS
GO_REF:0000107
(MGI:5613450|PMID:24321095)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24321095 GO_REF:0000024, GO_REF:0000107, MGI:5613450 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Ube3a ubiquitin protein ligase E3A ISO (PMID:24728990)
(MGI:5607382|PMID:24728990)
RGD PMID:24728990 MGI:5607382 NCBI chr 1:116,586,901...116,678,161
Ensembl chr 1:116,587,815...116,679,973
JBrowse link
G Usp7 ubiquitin specific peptidase 7 ISS
ISO
IEA
GO_REF:0000024
(MGI:6253084|PMID:27123980)
(PMID:27123980)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27123980 GO_REF:0000024, GO_REF:0000107, MGI:6253084 NCBI chr10:6,930,462...7,019,910
Ensembl chr10:6,975,244...7,018,930
JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked ISO (PMID:29626158) RGD PMID:29626158 NCBI chr  X:10,510,033...10,660,555
Ensembl chr  X:10,510,033...10,630,297
JBrowse link
entrainment of circadian clock term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 ISO MGI:2159013 (MGI:2445865|PMID:12451142) RGD PMID:12451142 MGI:2445865 NCBI chr20:27,082,961...27,083,410
Ensembl chr20:27,082,961...27,083,410
JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:224,869,087...224,885,101
Ensembl chr 1:224,882,439...224,884,205
JBrowse link
G Clock clock circadian regulator IEP RGD PMID:10095082 RGD:632379 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO MGI:3838359 (MGI:3838062|PMID:19217292) RGD PMID:19217292 MGI:3838062 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 IEA
ISO
GO_REF:0000107
MGI:4421807 (MGI:4420841|PMID:20080691)
Ensembl
RGD
PMID:20080691 GO_REF:0000107, MGI:4420841 NCBI chr13:26,145,989...26,394,505
Ensembl chr13:26,172,243...26,394,505
JBrowse link
G Sox14 SRY-box transcription factor 14 ISO (MGI:5440343|PMID:22920256) RGD PMID:22920256 MGI:5440343 NCBI chr 8:108,107,865...108,109,801
Ensembl chr 8:108,107,865...108,109,801
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase TAS RGD PMID:8770929 RGD:1298540 NCBI chr10:105,568,091...105,572,407
Ensembl chr10:105,568,091...105,572,403
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 ISO (MGI:5699646|PMID:26392540) RGD PMID:26392540 MGI:5699646 NCBI chr20:27,082,961...27,083,410
Ensembl chr20:27,082,961...27,083,410
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 IEA
ISO
GO_REF:0000107
(MGI:3798698|PMID:18411297)
Ensembl
RGD
PMID:18411297 GO_REF:0000107, MGI:3798698 NCBI chr 4:140,703,619...140,709,319
Ensembl chr 4:140,703,619...140,709,319
JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024, MGI:5532783 NCBI chr16:20,740,746...20,798,145
Ensembl chr16:20,740,826...20,794,039
JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISS
ISO
IBA
GO_REF:0000024
(MGI:5490394|PMID:23616524)
PMID:21873635
UniProt
RGD
PMID:23616524, PMID:21873635 GO_REF:0000024, MGI:5490394, RGD:13792537 NCBI chr 7:24,534,593...24,634,098
Ensembl chr 7:24,534,615...24,634,097
JBrowse link
G Cry2 cryptochrome circadian regulator 2 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:5490394|PMID:23616524)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23616524, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:5490394, RGD:13792537 NCBI chr 3:81,314,151...81,344,143
Ensembl chr 3:81,314,149...81,344,110
JBrowse link
G Fbxl12 F-box and leucine-rich repeat protein 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:21,656,636...21,662,755
Ensembl chr 8:21,656,639...21,661,259
JBrowse link
G Fbxl21 F-box and leucine-rich repeat protein 21 IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856)
RGD PMID:23452855, PMID:23452856, PMID:21873635 MGI:5470183, MGI:5487698, RGD:13792537 NCBI chr17:8,505,771...8,520,208
Ensembl chr17:8,505,996...8,520,147
JBrowse link
G Fbxl22 F-box and leucine-rich repeat protein 22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:72,198,043...72,204,730
Ensembl chr 8:72,198,043...72,204,730
JBrowse link
G Fbxl3 F-box and leucine-rich repeat protein 3 IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856), (MGI:5490394|PMID:23616524)
RGD PMID:23452855, PMID:23452856, PMID:23616524, PMID:21873635 MGI:5470183, MGI:5487698, MGI:5490394, RGD:13792537 NCBI chr15:93,647,307...93,667,395
Ensembl chr15:93,647,310...93,667,395
JBrowse link
G Fbxl6 F-box and leucine-rich repeat protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,602,056...117,604,954
Ensembl chr 7:117,602,041...117,605,141
JBrowse link
G Fbxl8 F-box and leucine-rich repeat protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,216,696...37,225,701
Ensembl chr19:37,221,132...37,226,065
JBrowse link
G Id2 inhibitor of DNA binding 2 ISS
ISO
GO_REF:0000024
(MGI:3838062|PMID:19217292)
UniProt
RGD
PMID:19217292 GO_REF:0000024, MGI:3838062 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Mta1 metastasis associated 1 ISS
ISO
GO_REF:0000024
(MGI:5582861|PMID:24089055)
UniProt
RGD
PMID:24089055 GO_REF:0000024, MGI:5582861 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 IEA
ISO
GO_REF:0000107
MGI:3574037 (MGI:3530176|PMID:15741322)
Ensembl
RGD
PMID:15741322 GO_REF:0000107, MGI:3530176 NCBI chr16:19,769,968...19,777,414
Ensembl chr16:19,769,968...19,777,414
JBrowse link
G Opn4 opsin 4 ISO (MGI:5925970|PMID:26320947) RGD PMID:26320947 MGI:5925970 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
G Opn5 opsin 5 ISO (MGI:5699646|PMID:26392540), (MGI:6376341|PMID:31607531), (MGI:6378274|PMID:30240620) RGD PMID:26392540, PMID:30240620, PMID:31607531 MGI:5699646, MGI:6376341, MGI:6378274 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172
JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:6378274|PMID:30240620) RGD PMID:30240620 MGI:6378274 NCBI chr14:2,328,690...2,371,913
Ensembl chr14:2,328,750...2,371,883
JBrowse link
G Per1 period circadian regulator 1 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3578039|PMID:15888647)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15888647, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3578039, RGD:13792537 NCBI chr10:55,681,761...55,696,557
Ensembl chr10:55,687,050...55,695,994
JBrowse link
G Per2 period circadian regulator 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Per3 period circadian regulator 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:168,088,126...168,123,482
Ensembl chr 5:168,086,998...168,123,395
JBrowse link
G Pml PML nuclear body scaffold ISO (MGI:5314433|PMID:22274616) RGD PMID:22274616 MGI:5314433 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024, MGI:5086036 NCBI chr 1:219,439,953...219,443,570
Ensembl chr 1:219,439,953...219,443,570
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024, MGI:5086036 NCBI chr 6:23,548,507...23,581,136
Ensembl chr 6:23,549,317...23,581,052
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024, MGI:5086036 NCBI chr12:39,864,302...39,882,030
Ensembl chr12:39,864,295...39,882,030
JBrowse link
G Rbm4 RNA binding motif protein 4 ISO (MGI:3703208|PMID:17264215) RGD PMID:17264215 MGI:3703208 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Rbm4b RNA binding motif protein 4B ISS
ISO
GO_REF:0000024
(MGI:3703208|PMID:17264215)
UniProt
RGD
PMID:17264215 GO_REF:0000024, MGI:3703208 NCBI chr 1:220,009,397...220,019,488
Ensembl chr 1:220,009,397...220,019,486
JBrowse link
G Sik1 salt-inducible kinase 1 ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024, MGI:5532783 NCBI chr20:10,670,747...10,680,279
Ensembl chr20:10,668,411...10,680,283
JBrowse link
G Tp53 tumor protein p53 ISS
ISO
GO_REF:0000024
(MGI:5613453|PMID:24051492)
UniProt
RGD
PMID:24051492 GO_REF:0000024, MGI:5613453 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Usp2 ubiquitin specific peptidase 2 ISS
ISO
GO_REF:0000024
(MGI:5607210|PMID:23213472)
UniProt
RGD
PMID:23213472 GO_REF:0000024, MGI:5607210 NCBI chr 8:48,403,985...48,432,525
Ensembl chr 8:48,406,260...48,430,885
JBrowse link
negative regulation of circadian rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cipc CLOCK-interacting pacemaker ISO (MGI:5532917|PMID:17310242) RGD PMID:17310242 MGI:5532917 NCBI chr 6:110,968,014...110,990,912
Ensembl chr 6:110,968,061...110,990,912
JBrowse link
G Cry1 cryptochrome circadian regulator 1 ISS
ISO
GO_REF:0000024
(MGI:4410413|PMID:19605937), (MGI:5532917|PMID:17310242)
UniProt
RGD
PMID:17310242, PMID:19605937 GO_REF:0000024, MGI:4410413, MGI:5532917 NCBI chr 7:24,534,593...24,634,098
Ensembl chr 7:24,534,615...24,634,097
JBrowse link
G Cry2 cryptochrome circadian regulator 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:4410413|PMID:19605937)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19605937 GO_REF:0000024, GO_REF:0000107, MGI:4410413 NCBI chr 3:81,314,151...81,344,143
Ensembl chr 3:81,314,149...81,344,110
JBrowse link
G Pasd1 PAS domain containing repressor 1 ISO (PMID:25936801) RGD PMID:25936801 NCBI chr16:70,001,708...70,006,009
NCBI chr16:70,011,911...70,027,313
Ensembl chr16:70,002,883...70,006,016
Ensembl chr16:70,002,883...70,006,016
JBrowse link
G Per2 period circadian regulator 2 ISS
ISO
GO_REF:0000024
(MGI:4410413|PMID:19605937)
UniProt
RGD
PMID:19605937 GO_REF:0000024, MGI:4410413 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 ISO (PMID:28903391)
(MGI:6285118|PMID:28903391)
RGD PMID:28903391 MGI:6285118 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Sfpq splicing factor proline and glutamine rich ISO (MGI:5014424|PMID:21680841) RGD PMID:21680841 MGI:5014424 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO (MGI:5014424|PMID:21680841) RGD PMID:21680841 MGI:5014424 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (MGI:5569417|PMID:24413057) RGD PMID:24413057 MGI:5569417 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Suv39h2 suppressor of variegation 3-9 homolog 2 ISO (MGI:5569417|PMID:24413057) RGD PMID:24413057 MGI:5569417 NCBI chr17:78,762,897...78,782,016
Ensembl chr17:78,762,991...78,782,016
JBrowse link
negative regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IMP RGD PMID:19066225 RGD:5128864 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Adora1 adenosine A1 receptor IMP RGD PMID:19491711 RGD:2317916 NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
JBrowse link
negative regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrl ghrelin and obestatin prepropeptide ISO (PMID:18329818) RGD PMID:18329818 NCBI chr 4:145,674,157...145,678,066
Ensembl chr 4:145,674,157...145,678,066
JBrowse link
G Htr7 5-hydroxytryptamine receptor 7 IDA RGD PMID:18466985 RGD:6480669 NCBI chr 1:254,547,964...254,671,811
Ensembl chr 1:254,547,620...254,671,778
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:10923657 RGD:10043386 NCBI chr 2:54,951,625...54,966,470
Ensembl chr 2:54,952,821...54,963,448
JBrowse link
negative regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora1 adenosine A1 receptor IDA in the sleep-promoting area of the lateral preoptic area of the brain RGD PMID:16109808 RGD:1625234 NCBI chr13:51,042,111...51,076,913
Ensembl chr13:51,042,248...51,076,852
JBrowse link
G Drd1 dopamine receptor D1 IDA RGD PMID:12944496 RGD:1581422 NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
JBrowse link
G Drd2 dopamine receptor D2 IDA RGD PMID:12944496 RGD:1581422 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642
JBrowse link
negative regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:10923657 RGD:10043386 NCBI chr 2:263,895,093...263,979,682
Ensembl chr 2:263,895,241...263,979,698
JBrowse link
negative regulation of locomotor rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lepr leptin receptor IMP RGD PMID:16982424 RGD:10412019 NCBI chr 5:120,503,475...120,682,281
Ensembl chr 5:120,564,645...120,682,221
JBrowse link
positive regulation of circadian rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arntl aryl hydrocarbon receptor nuclear translocator-like IEA
ISO
ISS
GO_REF:0000107
(MGI:4410413|PMID:19605937)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19605937 GO_REF:0000024, GO_REF:0000107, MGI:4410413 NCBI chr 1:178,039,002...178,137,469
Ensembl chr 1:178,039,063...178,137,465
JBrowse link
G Arntl2 aryl hydrocarbon receptor nuclear translocator-like 2 ISO (MGI:4410413|PMID:19605937) RGD PMID:19605937 MGI:4410413 NCBI chr 4:181,103,774...181,158,415
Ensembl chr 4:181,103,774...181,214,994
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO (MGI:4844267|PMID:18782782) RGD PMID:18782782 MGI:4844267 NCBI chr 1:265,100,094...265,270,263
Ensembl chr 1:265,157,379...265,269,837
JBrowse link
G Fbxw11 F-box and WD repeat domain containing 11 ISO (MGI:4844267|PMID:18782782) RGD PMID:18782782 MGI:4844267 NCBI chr10:17,542,374...17,640,718
Ensembl chr10:17,542,374...17,640,718
JBrowse link
G Mtnr1b melatonin receptor 1B IDA RGD PMID:12643943 RGD:9588678 NCBI chr 8:14,359,270...14,373,894
Ensembl chr 8:14,359,270...14,373,894
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:5574291|PMID:22356123)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22356123 GO_REF:0000024, GO_REF:0000107, MGI:5574291 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IDA RGD PMID:18946026 RGD:10448985 NCBI chr10:86,683,875...86,690,815
Ensembl chr10:86,683,875...86,690,815
JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 IMP RGD PMID:12930792 RGD:7777105 NCBI chr 1:248,982,039...250,300,952 JBrowse link
G Rora RAR-related orphan receptor A ISO (MGI:5504349|PMID:22753030) RGD PMID:22753030 MGI:5504349 NCBI chr 8:75,515,886...75,616,477
Ensembl chr 8:75,516,904...75,607,212
JBrowse link
G Rorc RAR-related orphan receptor C ISO (MGI:5504349|PMID:22753030) RGD PMID:22753030 MGI:5504349 NCBI chr 2:195,612,471...195,636,797
Ensembl chr 2:195,617,021...195,637,630
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:24043798)
GO_REF:0000024
RGD
UniProt
PMID:24043798 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Timeless timeless circadian regulator IMP RGD PMID:14564007 RGD:734503 NCBI chr 7:2,643,288...2,667,329
Ensembl chr 7:2,643,288...2,667,628
JBrowse link
positive regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alb albumin IDA RGD PMID:9748091 RGD:1625449 NCBI chr14:19,176,275...19,191,793
Ensembl chr14:19,176,277...19,191,863
JBrowse link
G Casp1 caspase 1 IMP RGD PMID:16455762 RGD:2315921 NCBI chr 8:2,605,743...2,614,637
Ensembl chr 8:2,604,962...2,614,631
JBrowse link
G Ghrh growth hormone releasing hormone IMP RGD PMID:19889861, PMID:20237285 RGD:2325188, RGD:10401262 NCBI chr 3:153,449,124...153,468,794
Ensembl chr 3:153,449,125...153,468,794
JBrowse link
G Ghrhr growth hormone releasing hormone receptor IMP RGD PMID:20237285 RGD:10401262 NCBI chr 4:85,587,321...85,602,389
Ensembl chr 4:85,588,595...85,601,666
JBrowse link
G Ghrl ghrelin and obestatin prepropeptide ISO (PMID:18329818) RGD PMID:18329818 NCBI chr 4:145,674,157...145,678,066
Ensembl chr 4:145,674,157...145,678,066
JBrowse link
G Mtnr1b melatonin receptor 1B IDA
IMP
RGD PMID:19429170, PMID:22171046 RGD:9588660, RGD:9588665 NCBI chr 8:14,359,270...14,373,894
Ensembl chr 8:14,359,270...14,373,894
JBrowse link
G Npy2r neuropeptide Y receptor Y2 IDA RGD PMID:16378653 RGD:1642507 NCBI chr 2:181,528,949...181,538,145
Ensembl chr 2:181,530,832...181,531,978
JBrowse link
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:10923657 RGD:10043386 NCBI chr 2:263,895,093...263,979,682
Ensembl chr 2:263,895,241...263,979,698
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:10923657 RGD:10043386 NCBI chr 2:54,951,625...54,966,470
Ensembl chr 2:54,952,821...54,963,448
JBrowse link
positive regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrh growth hormone releasing hormone NOT ISO (PMID:15538933) RGD PMID:15538933 NCBI chr 3:153,449,124...153,468,794
Ensembl chr 3:153,449,125...153,468,794
JBrowse link
G Pmch pro-melanin-concentrating hormone IDA RGD PMID:12964948 RGD:1642489 NCBI chr 7:28,655,206...28,656,522
Ensembl chr 7:28,654,733...28,657,522
JBrowse link
G Uts2 urotensin 2 IDA RGD PMID:15944374 RGD:2306844 NCBI chr 5:168,078,748...168,084,133
Ensembl chr 5:168,078,748...168,084,145
JBrowse link
G Uts2r urotensin 2 receptor IMP RGD PMID:15944374 RGD:2306844 NCBI chr10:110,364,291...110,365,451
Ensembl chr10:110,364,291...110,365,451
JBrowse link
positive regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adora2a adenosine A2a receptor IDA in the sleep-promoting area of the lateral preoptic area of the brain RGD PMID:16109808 RGD:1625234 NCBI chr20:14,265,251...14,282,873
Ensembl chr20:14,265,252...14,282,873
JBrowse link
G Opn4 opsin 4 ISO (MGI:5925970|PMID:26320947) RGD PMID:26320947 MGI:5925970 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549
JBrowse link
positive regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 ISS
ISO
GO_REF:0000024
(MGI:5492265|PMID:23716671)
UniProt
RGD
PMID:23716671 GO_REF:0000024, MGI:5492265 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nps neuropeptide S IDA RGD PMID:22300983 RGD:9831203 NCBI chr 1:207,508,414...207,512,195
Ensembl chr 1:207,508,414...207,512,195
JBrowse link
G Uts2 urotensin 2 IDA RGD PMID:15944374 RGD:2306844 NCBI chr 5:168,078,748...168,084,133
Ensembl chr 5:168,078,748...168,084,145
JBrowse link
G Uts2r urotensin 2 receptor IMP RGD PMID:15944374 RGD:2306844 NCBI chr10:110,364,291...110,365,451
Ensembl chr10:110,364,291...110,365,451
JBrowse link
regulation of circadian sleep/wake cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:6283959|PMID:30792350)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30792350 GO_REF:0000024, GO_REF:0000107, MGI:6283959 NCBI chr10:86,683,875...86,690,815
Ensembl chr10:86,683,875...86,690,815
JBrowse link
regulation of circadian sleep/wake cycle, non-REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO MGI:1926253 (MGI:3575072|PMID:15215293) RGD PMID:15215293 MGI:3575072 NCBI chr 2:189,088,570...189,096,785
Ensembl chr 2:189,088,570...189,096,785
JBrowse link
G Il18 interleukin 18 TAS PMID:11506998 UniProt PMID:11506998 RGD:8554500 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Il6 interleukin 6 IMP RGD PMID:12667648 RGD:1358315 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 ISO (MGI:3770734|PMID:17925011) RGD PMID:17925011 MGI:3770734 NCBI chr 2:209,838,607...209,852,471
Ensembl chr 2:209,838,869...209,852,471
JBrowse link
regulation of circadian sleep/wake cycle, REM sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO MGI:1926253 (MGI:3575072|PMID:15215293) RGD PMID:15215293 MGI:3575072 NCBI chr 2:189,088,570...189,096,785
Ensembl chr 2:189,088,570...189,096,785
JBrowse link
regulation of circadian sleep/wake cycle, sleep term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase IEP RGD PMID:11038259 RGD:631747 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Adrb1 adrenoceptor beta 1 ISO
IEA
ISS
(PMID:25083013)
(MGI:6368107|PMID:25083013)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25083013 GO_REF:0000024, GO_REF:0000107, MGI:6368107 NCBI chr 1:277,537,585...277,538,985
Ensembl chr 1:277,537,585...277,538,985
JBrowse link
G Cort cortistatin IDA RGD PMID:8622767 RGD:727760 NCBI chr 5:165,942,780...165,944,221 JBrowse link
G Csf2 colony stimulating factor 2 IMP RGD PMID:12047622 RGD:10449529 NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
JBrowse link
G Drd3 dopamine receptor D3 IMP RGD PMID:15913875 RGD:1625069 NCBI chr11:61,819,102...61,883,223
Ensembl chr11:61,822,077...61,874,327
JBrowse link
G Nmu neuromedin U IDA PMID:20233222 UniProt PMID:20233222 RGD:12911001 NCBI chr14:34,353,683...34,381,968
Ensembl chr14:34,354,503...34,381,828
JBrowse link
G Per3 period circadian regulator 3 IEA
ISO
ISS
GO_REF:0000107
(MGI:5300112|PMID:21957163)
(PMID:17346965), (PMID:19716732), (PMID:24439663), (PMID:24577121), (PMID:26903630)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17346965, PMID:19716732, PMID:21957163, PMID:24439663, PMID:24577121, PMID:26903630 GO_REF:0000024, GO_REF:0000107, MGI:5300112 NCBI chr 5:168,088,126...168,123,482
Ensembl chr 5:168,086,998...168,123,395
JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 IEP RGD PMID:11145837 RGD:724610 NCBI chr 1:79,790,879...79,796,064
Ensembl chr 1:79,790,705...79,796,111
JBrowse link
G Ptgds prostaglandin D2 synthase ISS
ISO
PMID:10781097
(MGI:3687807|PMID:10781097)
RGD PMID:10781097, PMID:10781097 MGI:3687807, RGD:8553735 NCBI chr 3:2,686,125...2,689,059
Ensembl chr 3:2,686,123...2,689,084
JBrowse link
regulation of circadian sleep/wake cycle, wakefulness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hcrtr2 hypocretin receptor 2 ISS
ISO
GO_REF:0000024
(PMID:11282968)
UniProt
RGD
PMID:11282968 GO_REF:0000024 NCBI chr 8:83,307,684...83,421,612
Ensembl chr 8:83,307,684...83,421,612
JBrowse link
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:10923657 RGD:10043386 NCBI chr 2:263,895,093...263,979,682
Ensembl chr 2:263,895,241...263,979,698
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:10923657 RGD:10043386 NCBI chr 2:54,951,625...54,966,470
Ensembl chr 2:54,952,821...54,963,448
JBrowse link
regulation of locomotor rhythm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtor mechanistic target of rapamycin kinase ISS
ISO
GO_REF:0000024
(MGI:6159528|PMID:29750810)
UniProt
RGD
PMID:29750810 GO_REF:0000024, MGI:6159528 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Oprl1 opioid related nociceptin receptor 1 IMP RGD PMID:16310969 RGD:9835023 NCBI chr 3:177,223,779...177,231,663
Ensembl chr 3:177,225,737...177,231,663
JBrowse link
G Zfhx3 zinc finger homeobox 3 ISO (MGI:5660827|PMID:26232227) RGD PMID:26232227 MGI:5660827 NCBI chr19:42,753,983...42,925,794
Ensembl chr19:42,758,127...42,920,344
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    regulation of biological process 13071
      regulation of circadian rhythm 134
        entrainment of circadian clock + 34
        negative regulation of circadian rhythm + 19
        positive regulation of circadian rhythm + 27
        regulation of circadian sleep/wake cycle + 35
        regulation of locomotor rhythm + 4
        temperature compensation of the circadian clock 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    rhythmic process 393
      circadian rhythm 265
        regulation of circadian rhythm 134
          entrainment of circadian clock + 34
          negative regulation of circadian rhythm + 19
          positive regulation of circadian rhythm + 27
          regulation of circadian sleep/wake cycle + 35
          regulation of locomotor rhythm + 4
          temperature compensation of the circadian clock 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.