Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:flavin-containing compound biosynthetic process
go back to main search page
Accession:GO:0042727 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position.
Synonyms:exact_synonym: flavin-containing compound anabolism;   flavin-containing compound biosynthesis;   flavin-containing compound formation;   flavin-containing compound synthesis
 related_synonym: riboflavin and derivative biosynthesis;   riboflavin and derivative biosynthetic process;   vitamin B2 and derivative biosynthesis;   vitamin B2 and derivative biosynthetic process


show annotations for term's descendants           Sort by:
FAD biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flad1 flavin adenine dinucleotide synthetase 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 2:174,819,451...174,828,921
Ensembl chr 2:174,819,453...174,828,977 		JBrowse link
FMN biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053065.1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr 3:86,511,659...86,512,126 JBrowse link
G Rfk riboflavin kinase involved_in IBA
IEA		 PMID:21873635
GO_REF:0000041		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053065.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:86,511,659...86,512,126 JBrowse link
G Rfk riboflavin kinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19903
    metabolic process 12212
      biosynthetic process 6289
        cellular biosynthetic process 5821
          heterocycle biosynthetic process 4009
            flavin-containing compound biosynthetic process 3
              FMN biosynthetic process 2
              flavin adenine dinucleotide biosynthetic process + 1
              prenyl-FMNH2 biosynthetic process 0
              riboflavin biosynthetic process 2
paths to the root