Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Community Projects Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:flavin-containing compound metabolic process
go back to main search page
Accession:GO:0042726 term browser browse the term
Definition:The chemical reactions and pathways involving a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position.
Synonyms:exact_synonym: flavin-containing compound metabolism
 related_synonym: riboflavin and derivative metabolic process;   riboflavin and derivative metabolism;   vitamin B2 and derivative metabolic process;   vitamin B2 and derivative metabolism


show annotations for term's descendants           Sort by:
FAD biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flad1 flavin adenine dinucleotide synthetase 1 involved_in IEA
IBA		 GO_REF:0000041
PMID:21873635		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 2:174,819,451...174,828,921
Ensembl chr 2:174,819,453...174,828,977 		JBrowse link
flavin adenine dinucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flad1 flavin adenine dinucleotide synthetase 1 involved_in ISO (MGI:6103054|PMID:28402850) RGD PMID:28402850 MGI:6103054 NCBI chr 2:174,819,451...174,828,921
Ensembl chr 2:174,819,453...174,828,977 		JBrowse link
G Rfk riboflavin kinase involved_in ISO MGI:4356069 (MGI:5565643|PMID:24272050) RGD PMID:24272050 MGI:5565643 NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438
Ensembl chr  X:214,799,825...214,807,438 		JBrowse link
G Slc52a2 solute carrier family 52 member 2 involved_in ISO (MGI:5766100|PMID:26791833), (MGI:6709300|PMID:23911957) RGD PMID:23911957 PMID:26791833 MGI:5766100 MGI:6709300 NCBI chr 7:108,246,003...108,267,642
Ensembl chr 7:108,262,612...108,268,034 		JBrowse link
G Slc52a3 solute carrier family 52 member 3 involved_in ISO
IEA		 MGI:4363008 (MGI:6472232|PMID:33116204)
GO_REF:0000107		 RGD
Ensembl		 PMID:33116204 GO_REF:0000107 MGI:6472232 NCBI chr 3:140,498,924...140,515,845
Ensembl chr 3:140,509,473...140,514,096 		JBrowse link
flavin adenine dinucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vcp valosin-containing protein involved_in ISO (PMID:23498975) RGD PMID:23498975 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
FMN biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase involved_in IBA
IEA		 PMID:21873635
GO_REF:0000041		 UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438
Ensembl chr  X:214,799,825...214,807,438 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438
Ensembl chr  X:214,799,825...214,807,438 		JBrowse link
riboflavin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flad1 flavin adenine dinucleotide synthetase 1 involved_in ISO (MGI:6103054|PMID:28402850) RGD PMID:28402850 MGI:6103054 NCBI chr 2:174,819,451...174,828,921
Ensembl chr 2:174,819,453...174,828,977 		JBrowse link
G Rfk riboflavin kinase involved_in ISO
IBA		 (PMID:19641494)
MGI:4356069 (MGI:5565643|PMID:24272050)
PMID:21873635		 RGD PMID:19641494 PMID:24272050 PMID:21873635 MGI:5565643, RGD:13792537 NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438
Ensembl chr  X:214,799,825...214,807,438 		JBrowse link
G Slc52a2 solute carrier family 52 member 2 involved_in ISO (MGI:5766100|PMID:26791833), (MGI:6709300|PMID:23911957) RGD PMID:23911957 PMID:26791833 MGI:5766100 MGI:6709300 NCBI chr 7:108,246,003...108,267,642
Ensembl chr 7:108,262,612...108,268,034 		JBrowse link
G Slc52a3 solute carrier family 52 member 3 involved_in ISO
IEA		 MGI:4363008 (MGI:6472232|PMID:33116204)
GO_REF:0000107		 RGD
Ensembl		 PMID:33116204 GO_REF:0000107 MGI:6472232 NCBI chr 3:140,498,924...140,515,845
Ensembl chr 3:140,509,473...140,514,096 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19553
    metabolic process 11538
      nitrogen compound metabolic process 9399
        cellular nitrogen compound metabolic process 6555
          flavin-containing compound metabolic process 5
            FMN metabolic process + 1
            flavin adenine dinucleotide metabolic process + 5
            flavin-containing compound biosynthetic process + 4
            flavin-containing compound catabolic process + 1
            riboflavin metabolic process + 4
paths to the root