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ONTOLOGY REPORT - ANNOTATIONS


Term:MHC protein complex
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Accession:GO:0042611 term browser browse the term
Definition:A transmembrane protein complex composed of an MHC alpha chain and, in most cases, either an MHC class II beta chain or an invariant beta2-microglobin chain, and with or without a bound peptide, lipid, or polysaccharide antigen.


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MHC class I protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:114,087,287...114,093,311
Ensembl chr 3:114,087,287...114,093,309
JBrowse link
G Hfe homeostatic iron regulator NOT|part_of ISO (PMID:9546397) RGD PMID:9546397 NCBI chr17:43,661,276...43,669,327
Ensembl chr17:43,661,222...43,669,985
JBrowse link
G Mr1 major histocompatibility complex, class I-related part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:72,771,992...72,789,861
Ensembl chr13:72,771,984...72,789,841
JBrowse link
G RT1-EC2 RT1 class Ib, locus EC2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043
G RT1-S3 RT1 class Ib, locus S3 part_of ISO (PMID:12411439), (PMID:16474394), (PMID:18448674) RGD PMID:12411439 PMID:16474394 PMID:18448674 NCBI chr20:3,176,124...3,180,825
Ensembl chr20:3,176,107...3,179,818
JBrowse link
MHC class Ib protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100909797 RT1 class I histocompatibility antigen, AA alpha chain-like part_of ISO (MGI:52901|PMID:8464890) RGD PMID:8464890 MGI:52901 NCBI chr20:3,242,236...3,253,995
Ensembl chr20:3,242,470...3,249,189
JBrowse link
G RT1-CE5 RT1 class I, locus CE5 part_of ISO (PMID:28636952) RGD PMID:28636952 NCBI chr20:4,892,702...4,896,993
Ensembl chr20:4,892,702...4,896,991
JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 part_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:1,814,661...1,833,033
Ensembl chr20:1,814,661...1,818,800
JBrowse link
G RT1-S3 RT1 class Ib, locus S3 part_of ISO (PMID:23335510), (PMID:25631937), (PMID:30087334), (PMID:9427624) RGD PMID:9427624 PMID:23335510 PMID:25631937 PMID:30087334 NCBI chr20:3,176,124...3,180,825
Ensembl chr20:3,176,107...3,179,818
JBrowse link
MHC class II protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 molecule colocalizes_with
part_of
IBA
ISO
PMID:21873635
(MGI:3033762|PMID:7985028)
RGD PMID:7985028, PMID:21873635 MGI:3033762, RGD:13792537 NCBI chr18:56,071,420...56,080,851
Ensembl chr18:56,071,478...56,080,849
JBrowse link
G RT1-B RT1 class II, locus B part_of IEA GO_REF:0000043 UniProt GO_REF:0000043
G RT1-Ba RT1 class II, locus Ba part_of IEA
ISO
GO_REF:0000107
(MGI:1933465|PMID:11148202), (MGI:2671681|PMID:9492004), (MGI:3033762|PMID:7985028), (MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040), (MGI:79111|PMID:8598041), (MGI:79272|PMID:8638109)
Ensembl
RGD
PMID:7679955 PMID:7985028 PMID:8598040 PMID:8598041 PMID:8638109 PMID:9492004 PMID:11148202 GO_REF:0000107 MGI:1933465 MGI:2671681 MGI:3033762 MGI:52620 MGI:79110 MGI:79111 MGI:79272 NCBI chr20:4,066,133...4,070,726
Ensembl chr20:4,066,132...4,070,721
JBrowse link
G RT1-Bb RT1 class II, locus Bb part_of IEA
ISO
GO_REF:0000043
(MGI:1933465|PMID:11148202), (MGI:2671681|PMID:9492004), (MGI:3033762|PMID:7985028), (MGI:3033881|PMID:9432982), (MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040), (MGI:79111|PMID:8598041), (MGI:79272|PMID:8638109)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:7679955 PMID:7985028 PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 PMID:9492004 PMID:11148202 GO_REF:0000043 GO_REF:0000107 MGI:1933465 MGI:2671681 MGI:3033762 MGI:3033881 MGI:52620 MGI:79110 MGI:79111 MGI:79272 NCBI chr20:4,043,726...4,049,367
Ensembl chr20:4,039,413...4,049,711
JBrowse link
G RT1-Da RT1 class II, locus Da part_of ISO (PMID:1448172), (PMID:21502329), (PMID:22733780), (PMID:7477400), (PMID:7606781), (PMID:9354468) RGD PMID:1448172 PMID:7477400 PMID:7606781 PMID:9354468 PMID:21502329 PMID:22733780 NCBI chr20:4,127,644...4,132,616
Ensembl chr20:4,127,644...4,132,616
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 part_of ISO
IEA
(PMID:1448172), (PMID:21502329), (PMID:22733780), (PMID:7477400), (PMID:7606781), (PMID:9354468)
GO_REF:0000043
RGD
UniProt
PMID:1448172 PMID:7477400 PMID:7606781 PMID:9354468 PMID:21502329 PMID:22733780 GO_REF:0000043 NCBI chr20:4,087,621...4,097,190
Ensembl chr20:4,087,618...4,097,190
JBrowse link
G RT1-Db2 RT1 class II, locus Db2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:4,106,136...4,126,103
Ensembl chr20:4,106,189...4,125,387
JBrowse link
G RT1-DMa RT1 class II, locus DMa part_of ISO (PMID:22247549), (PMID:22733780), (PMID:7606781) RGD PMID:7606781 PMID:22247549 PMID:22733780 NCBI chr20:3,935,512...3,938,915
Ensembl chr20:5,240,975...5,244,386
JBrowse link
G RT1-DMb RT1 class II, locus DMb part_of ISO (PMID:22247549), (PMID:22733780), (PMID:7606781) RGD PMID:7606781 PMID:22247549 PMID:22733780 NCBI chr20:3,945,383...3,952,838
Ensembl chr20:5,227,045...5,234,290
Ensembl chr20:5,227,045...5,234,290
JBrowse link
G RT1-DOa RT1 class II, locus DOa part_of ISO (PMID:22733780) RGD PMID:22733780 NCBI chr20:3,889,106...3,892,360
Ensembl chr20:3,889,370...3,892,449
JBrowse link
G RT1-DOb RT1 class II, locus DOb part_of ISO (PMID:22733780) RGD PMID:22733780 NCBI chr20:4,020,273...4,026,398
Ensembl chr20:4,020,317...4,026,346
JBrowse link
G RT1-Ha RT1 class II, locus Ha part_of ISO (PMID:20356827) RGD PMID:20356827 NCBI chr20:3,875,478...3,885,140
Ensembl chr20:3,875,706...3,881,461
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20137
    protein-containing complex 6038
      membrane protein complex 1243
        plasma membrane protein complex 564
          MHC protein complex 20
            MHC class I protein complex 5
            MHC class II protein complex 12
            MHC class Ib protein complex 4
Path 2
Term Annotations click to browse term
  cellular_component 20137
    cellular anatomical entity 19837
      membrane 10007
        plasma membrane 6229
          plasma membrane protein complex 564
            MHC protein complex 20
              MHC class I protein complex 5
              MHC class II protein complex 12
              MHC class Ib protein complex 4
paths to the root