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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism


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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:4,969,456...5,326,682 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2655944|PMID:12610736) MGI
Ensembl
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:2,562,394...2,580,261 JBrowse link
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638293|PMID:25701869) MGI
Ensembl
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chrNW_004936475:28,859,222...28,890,407 JBrowse link
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638293|PMID:25701869) MGI
Ensembl
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chrNW_004936612:2,262,115...2,294,287 JBrowse link
G LOC101969633 dehydrogenase/reductase SDR family member 4-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:481,510...493,330 JBrowse link
G LOC101970041 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:2,919,611...2,937,274 JBrowse link
G LOC101970101 cytochrome P450 1B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936663:345,021...355,188 JBrowse link
G LOC101970102 cytochrome P450 27C1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chrNW_004936469:44,016,925...44,042,569 JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chrNW_004936601:1,401,215...1,410,195 JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936648:2,060,131...2,088,021 JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12807874) MGI
Ensembl
PMID:12807874 GO_REF:0000107 NCBI chrNW_004936495:11,065,946...11,082,104 JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:356,068...368,525 JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180434|PMID:11897783) RGD
MGI
Ensembl
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chrNW_004936591:3,347,346...3,368,062 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15040
    metabolic process 9484
      cellular metabolic process 7905
        cellular aldehyde metabolic process 59
          retinal metabolic process 15
Path 2
Term Annotations click to browse term
  biological_process 15040
    metabolic process 9484
      primary metabolic process 8554
        lipid metabolic process 1164
          cellular lipid metabolic process 845
            isoprenoid metabolic process 89
              terpenoid metabolic process 70
                diterpenoid metabolic process 62
                  retinoid metabolic process 54
                    retinal metabolic process 15
paths to the root