Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
go back to main search page
Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism



show annotations for term's descendants           Sort by:
 
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,331,144
JBrowse link
G AKR1C1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr10:65,580,297...65,594,998
Ensembl chr10:65,576,464...65,678,248
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2655944|PMID:12610736) Ensembl
Ensembl
MGI
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,701...29,083,143
JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5638293|PMID:25701869) Ensembl
Ensembl
MGI
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr 6:7,008,330...7,054,089
Ensembl chr 6:7,012,332...7,055,305
JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:5638293|PMID:25701869)
GO_Central
GO_Central
Ensembl
MGI
PMID:21873635 PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr 9:39,864,136...39,916,491
Ensembl chr 9:39,872,645...39,917,263
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683
JBrowse link
G DHRS13 dehydrogenase/reductase 13 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr12:45,121,146...45,127,484
Ensembl chr12:45,121,155...45,127,446
JBrowse link
G DHRS4 dehydrogenase/reductase (SDR family) member 4 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2655870|PMID:12680773)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:12680773 PMID:21873635 MGI:2655870 NCBI chr 7:75,242,121...75,255,594
Ensembl chr 7:75,242,124...75,255,598
JBrowse link
G LOC100517560 cytochrome P450 27C1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439
JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12807874) MGI
Ensembl
PMID:12807874 GO_REF:0000107 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:59,274,383...59,293,139
Ensembl chr 6:59,274,387...59,292,765
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2180434|PMID:11897783) Ensembl
Ensembl
MGI
RGD
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IBA
IEA
(PMID:21873635) GO_Central
GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 4:75,586,346...75,598,985
Ensembl chr 4:75,586,525...75,598,989
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17429
    metabolic process 10976
      cellular metabolic process 9231
        cellular aldehyde metabolic process 69
          retinal metabolic process 17
            retinal isomerization 0
Path 2
Term Annotations click to browse term
  biological_process 17429
    metabolic process 10976
      primary metabolic process 9786
        lipid metabolic process 1316
          cellular lipid metabolic process 979
            isoprenoid metabolic process 104
              terpenoid metabolic process 83
                diterpenoid metabolic process 73
                  retinoid metabolic process 64
                    retinal metabolic process 17
                      retinal isomerization 0
paths to the root