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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism



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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in ISS
IDA
(PMID:29847635), (PMID:33375396) UniProt
UniProt
PMID:29847635 PMID:33375396 GO_REF:0000024 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 7:134,527,567...134,541,412
Ensembl chr 7:134,527,567...134,541,412
JBrowse link
G AKR1C1 aldo-keto reductase family 1 member C1 involved_in IDA (PMID:21851338) UniProt
UniProt
PMID:21851338 NCBI chr10:4,963,415...4,983,283
Ensembl chr10:4,963,253...4,983,283
JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IDA (PMID:21851338) UniProt
UniProt
PMID:21851338 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2655944|PMID:12610736) Ensembl
MGI
Ensembl
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IDA (PMID:11585737) UniProt
UniProt
PMID:11585737 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IDA (PMID:11007799) UniProt
UniProt
PMID:11007799 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115
JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within
IBA
NAS
ISO
IDA
IMP
IEA
(PMID:21873635)
(PMID:15983114)
(MGI:5638293|PMID:25701869)
(PMID:11401432), (PMID:24668807)
(PMID:17951468)
GO_Central
BHF-UCL
MGI
UniProt
UniProt
BHF-UCL
Ensembl
GO_Central
PMID:11401432 PMID:15983114 PMID:17951468 PMID:21873635 PMID:24668807 More... GO_REF:0000107 MGI:5638293 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142
JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within
NAS
IBA
ISO
IEA
(PMID:11278918)
(PMID:21873635)
(MGI:5638293|PMID:25701869)
UniProt
GO_Central
MGI
UniProt
Ensembl
GO_Central
PMID:11278918 PMID:21873635 PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr11:112,175,512...112,218,946
Ensembl chr11:112,175,510...112,224,699
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IDA
IEA
(PMID:15258110) UniProt
UniProt
Ensembl
PMID:15258110 GO_REF:0000107 NCBI chr 2:38,067,509...38,076,151
Ensembl chr 2:38,066,973...38,109,902
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in IDA (PMID:27059013) UniProt
UniProt
PMID:27059013 NCBI chr 2:127,183,832...127,220,299
Ensembl chr 2:127,183,832...127,220,313
JBrowse link
G DHRS13 dehydrogenase/reductase 13 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr17:28,897,781...28,903,079
Ensembl chr17:28,897,781...28,903,079
JBrowse link
G DHRS4 dehydrogenase/reductase 4 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2655870|PMID:12680773)
(PMID:21873635)
MGI
GO_Central
GO_Central
PMID:12680773 PMID:21873635 MGI:2655870 NCBI chr14:23,953,770...23,969,279
Ensembl chr14:23,953,734...23,969,279
JBrowse link
G DHRS4L1 dehydrogenase/reductase 4 like 1 (pseudogene) involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:24,007,084...24,051,377
Ensembl chr14:24,036,439...24,051,028
JBrowse link
G DHRS4L2 dehydrogenase/reductase 4 like 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr14:23,969,874...24,006,408
Ensembl chr14:23,969,874...24,006,408
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IDA (PMID:19458327) UniProt
UniProt
PMID:19458327 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within IDA (PMID:12807874) MGI
MGI
PMID:12807874 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IBA
IDA
(PMID:21873635)
(PMID:18039331)
GO_Central
UniProt
GO_Central
UniProt
PMID:18039331 PMID:21873635 NCBI chr19:55,039,103...55,069,520
Ensembl chr19:55,039,108...55,071,291
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2180434|PMID:11897783) Ensembl
RGD
MGI
Ensembl
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,449,954
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IBA
IDA
(PMID:21873635)
(PMID:18926804), (PMID:19102727)
GO_Central
UniProt
UniProt
GO_Central
PMID:18926804 PMID:19102727 PMID:21873635 NCBI chr 8:56,300,005...56,320,175
Ensembl chr 8:56,300,005...56,320,776
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19753
    metabolic process 13172
      cellular metabolic process 10981
        cellular aldehyde metabolic process 79
          retinal metabolic process 21
            retinal isomerization 0
Path 2
Term Annotations click to browse term
  biological_process 19753
    metabolic process 13172
      primary metabolic process 11584
        lipid metabolic process 1535
          cellular lipid metabolic process 1102
            isoprenoid metabolic process 135
              terpenoid metabolic process 112
                diterpenoid metabolic process 101
                  retinoid metabolic process 92
                    retinal metabolic process 21
                      retinal isomerization 0
paths to the root