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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism



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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:55,058,361...55,186,255
Ensembl chr 6:55,058,361...55,186,253
JBrowse link
G AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2655944|PMID:12610736) MGI
Ensembl
Ensembl
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:27,672,422...27,695,029
Ensembl chr 1:27,673,024...27,694,868
JBrowse link
G BCO1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:5638293|PMID:25701869)
(PMID:21873635)
MGI
GO_Central
Ensembl
PMID:21873635 PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr 5:70,598,743...70,637,273
Ensembl chr 5:70,599,284...70,637,017
JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5638293|PMID:25701869)
GO_Central
MGI
PMID:21873635 PMID:25701869 MGI:5638293 NCBI chr 5:20,914,658...20,969,847
Ensembl chr 5:20,915,647...20,964,177
JBrowse link
G CPNE6 copine 6 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2655870|PMID:12680773)
(PMID:21873635)
MGI
GO_Central
PMID:12680773 PMID:21873635 MGI:2655870 NCBI chr 8:4,046,532...4,058,498
Ensembl chr 8:4,046,544...4,084,744
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:30,273,281...30,278,554
Ensembl chr17:30,272,749...30,278,554
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G DHRS13 dehydrogenase/reductase 13 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:43,067,280...43,071,571
Ensembl chr 9:43,052,114...43,071,742
JBrowse link
G DHRS13 dehydrogenase/reductase 13 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:43,050,929...43,066,886
Ensembl chr 9:43,052,114...43,071,742
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303
JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO (PMID:12807874) MGI PMID:12807874 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:102,539,363...102,552,749
Ensembl chr 1:102,539,124...102,554,027
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2180434|PMID:11897783) RGD
MGI
Ensembl
Ensembl
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr29:7,660,882...7,679,705
Ensembl chr29:7,661,633...7,679,622
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17341
    metabolic process 11291
      cellular metabolic process 9486
        cellular aldehyde metabolic process 70
          retinal metabolic process 18
Path 2
Term Annotations click to browse term
  biological_process 17341
    metabolic process 11291
      primary metabolic process 10061
        lipid metabolic process 1308
          cellular lipid metabolic process 967
            isoprenoid metabolic process 99
              terpenoid metabolic process 77
                diterpenoid metabolic process 69
                  retinoid metabolic process 61
                    retinal metabolic process 18
paths to the root