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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism


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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 involved_in ISO (PMID:29847635), (PMID:33375396) UniProt PMID:29847635 PMID:33375396 NCBI chrNW_004955423:612,098...738,702
Ensembl chrNW_004955423:612,098...736,035
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:2655944|PMID:12610736) MGI PMID:12610736 MGI:2655944 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (PMID:11585737) UniProt PMID:11585737 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chrNW_004955439:1,773,884...1,794,325
Ensembl chrNW_004955439:1,773,861...1,794,328
JBrowse link
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in
ISO (MGI:5638293|PMID:25701869)
(MGI:3587559|PMID:15951442)
(PMID:17951468)
(PMID:11401432), (PMID:24668807)
MGI
UniProt
PMID:11401432 PMID:15951442 PMID:17951468 PMID:24668807 PMID:25701869 MGI:3587559 MGI:5638293 NCBI chrNW_004955522:3,985,515...4,018,116
Ensembl chrNW_004955522:3,985,266...4,018,886
JBrowse link
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within ISO (MGI:5638293|PMID:25701869) MGI PMID:25701869 MGI:5638293 NCBI chrNW_004955412:13,838,260...13,872,886
Ensembl chrNW_004955412:13,837,782...13,872,886
JBrowse link
G LOC102009223 cytochrome P450 1B1 involved_in ISO (PMID:15258110)
(MGI:5572883|PMID:15258110)
UniProt PMID:15258110 MGI:5572883 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131
JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584
JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in ISO (PMID:19458327) UniProt PMID:19458327 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421
JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO (PMID:12807874) MGI PMID:12807874 NCBI chrNW_004955466:2,506,641...2,521,506
Ensembl chrNW_004955466:2,508,338...2,520,903
JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in ISO (PMID:18039331) UniProt PMID:18039331 NCBI chrNW_004955567:1,091,636...1,108,648
Ensembl chrNW_004955567:1,091,636...1,108,732
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within ISO (MGI:2180434|PMID:11897783) RGD
MGI
PMID:11897783 PMID:21785167 MGI:2180434 RGD:6893661 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C member 5 involved_in ISO (PMID:18926804), (PMID:19102727) UniProt PMID:18926804 PMID:19102727 NCBI chrNW_004955454:15,339,353...15,349,180
Ensembl chrNW_004955454:15,339,297...15,351,628
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12270
    metabolic process 7820
      cellular metabolic process 6647
        cellular aldehyde metabolic process 49
          retinal metabolic process 13
Path 2
Term Annotations click to browse term
  biological_process 12270
    metabolic process 7820
      primary metabolic process 6969
        lipid metabolic process 979
          cellular lipid metabolic process 725
            isoprenoid metabolic process 65
              terpenoid metabolic process 50
                diterpenoid metabolic process 45
                  retinoid metabolic process 37
                    retinal metabolic process 13
paths to the root