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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism



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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2655944|PMID:12610736) MGI
Ensembl
PMID:12610736 GO_REF:0000107 MGI:2655944 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611
JBrowse link
G BCO1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638293|PMID:25701869) MGI
Ensembl
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr16:61,843,567...61,897,012
Ensembl chr16:81,270,577...81,323,088
JBrowse link
G BCO2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5638293|PMID:25701869) MGI
Ensembl
PMID:25701869 GO_REF:0000107 MGI:5638293 NCBI chr11:107,056,525...107,105,358
Ensembl chr11:110,899,703...110,942,547
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G LOC100974941 dehydrogenase/reductase SDR family member 4 acts_upstream_of_or_within ISO (MGI:2655870|PMID:12680773) MGI PMID:12680773 MGI:2655870 Ensembl chr14:22,831,756...22,846,695 JBrowse link
G LOC100986388 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,079,580...5,157,572
Ensembl chr10:5,081,214...5,139,812
JBrowse link
G LOC100986729 aldo-keto reductase family 1 member C1 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,003,610...5,020,648
Ensembl chr10:4,990,110...5,003,538
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12807874) MGI
Ensembl
PMID:12807874 GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286
JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2180434|PMID:11897783) RGD
Ensembl
MGI
PMID:11897783 PMID:21785167 GO_REF:0000107 MGI:2180434 RGD:6893661 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:52,746,371...52,769,269
Ensembl chr 8:50,113,413...50,137,717
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15423
    metabolic process 10078
      cellular metabolic process 8321
        cellular aldehyde metabolic process 63
          retinal metabolic process 18
            retinal isomerization 0
Path 2
Term Annotations click to browse term
  biological_process 15423
    metabolic process 10078
      primary metabolic process 8975
        lipid metabolic process 1218
          cellular lipid metabolic process 875
            isoprenoid metabolic process 98
              terpenoid metabolic process 78
                diterpenoid metabolic process 68
                  retinoid metabolic process 60
                    retinal metabolic process 18
                      retinal isomerization 0
paths to the root