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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism



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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 involved_in ISO (PMID:29847635), (PMID:33375396) RGD PMID:29847635 PMID:33375396 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Akr1c1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:65,810,474...65,837,385
Ensembl chr17:65,810,475...65,837,326
JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO (MGI:2655944|PMID:12610736) RGD PMID:12610736 MGI:2655944 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in IEA
ISO
GO_REF:0000107
(PMID:11585737)
Ensembl
RGD
PMID:11585737 GO_REF:0000107 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 involved_in ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,183,940...16,203,385
Ensembl chr 1:16,183,940...16,203,385
JBrowse link
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in
ISO
IBA
ISS
MGI:2177469 (MGI:5638293|PMID:25701869)
PMID:21873635
GO_REF:0000024
(MGI:3587559|PMID:15951442)
(PMID:11401432), (PMID:17951468), (PMID:24668807)
RGD
UniProt
PMID:11401432 PMID:15951442 PMID:17951468 PMID:24668807 PMID:25701869 More... GO_REF:0000024 MGI:3587559 MGI:5638293, RGD:13792537 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101
JBrowse link
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1926923 (MGI:5638293|PMID:25701869)
PMID:21873635
RGD PMID:25701869 PMID:21873635 MGI:5638293, RGD:13792537 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5572883|PMID:15258110)
GO_REF:0000024
(PMID:15258110)
Ensembl
RGD
UniProt
PMID:15258110 GO_REF:0000024 GO_REF:0000107 MGI:5572883 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Dhrs4 dehydrogenase/reductase 4 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:2655870|PMID:12680773)
PMID:21873635
RGD PMID:12680773 PMID:21873635 MGI:2655870, RGD:13792537 NCBI chr15:28,966,544...28,978,135
Ensembl chr15:28,966,553...28,978,127
JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:2150869 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in ISO (PMID:19458327) RGD PMID:19458327 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO (PMID:12807874) RGD PMID:12807874 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in IBA
ISO
PMID:21873635
(PMID:18039331)
RGD PMID:18039331 PMID:21873635 RGD:13792537 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within IMP
ISO
MGI:2181399 (MGI:2180434|PMID:11897783) RGD PMID:11897783 PMID:21785167 MGI:2180434, RGD:6893661 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in IBA
ISO
PMID:21873635
(PMID:18926804), (PMID:19102727)
RGD PMID:18926804 PMID:19102727 PMID:21873635 RGD:13792537 NCBI chr 5:17,018,813...17,043,974
Ensembl chr 5:17,018,813...17,040,970
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      cellular metabolic process 9697
        cellular aldehyde metabolic process 72
          retinal metabolic process 17
Path 2
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      primary metabolic process 10260
        lipid metabolic process 1423
          cellular lipid metabolic process 1046
            isoprenoid metabolic process 122
              terpenoid metabolic process 96
                diterpenoid metabolic process 86
                  retinoid metabolic process 77
                    retinal metabolic process 17
paths to the root