ONTOLOGY REPORT - ANNOTATIONS
Term: retinal metabolic process
Accession: GO:0042574
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Definition: The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms: exact_synonym: retinal metabolism; retinaldehyde metabolic process; retinaldehyde metabolism
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Abca4
ATP binding cassette subfamily A member 4
involved_in
ISO
(PMID:29847635), (PMID:33375396)
RGD
PMID:29847635 PMID:33375396
NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
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Akr1b10
aldo-keto reductase family 1 member B10
IDA
RGD
PMID:20709016
RGD:6903952
NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
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Akr1c1
aldo-keto reductase family 1, member C1
involved_in
ISO
(PMID:21851338)
RGD
PMID:21851338
NCBI chr17:65,810,474...65,837,385
Ensembl chr17:65,810,475...65,837,326
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Akr1c3
aldo-keto reductase family 1, member C3
involved_in
ISO
(PMID:21851338)
RGD
PMID:21851338
NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
(MGI:2655944|PMID:12610736)
RGD
PMID:12610736
MGI:2655944
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Aldh1a3
aldehyde dehydrogenase 1 family, member A3
involved_in
IEA ISO
GO_REF:0000107 (PMID:11585737)
Ensembl RGD
PMID:11585737
GO_REF:0000107
NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
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Aldh8a1
aldehyde dehydrogenase 8 family, member A1
involved_in
ISO
(PMID:11007799)
RGD
PMID:11007799
NCBI chr 1:16,183,940...16,203,385
Ensembl chr 1:16,183,940...16,203,385
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Bco1
beta-carotene oxygenase 1
acts_upstream_of_or_within involved_in
ISO ISS IBA IEA
MGI:2177469 (MGI:5638293|PMID:25701869) (PMID:11401432), (PMID:17951468), (PMID:24668807) (MGI:3587559|PMID:15951442) GO_REF:0000024 PMID:21873635 GO_REF:0000107
RGD UniProt Ensembl
PMID:11401432 PMID:15951442 PMID:17951468 PMID:24668807 PMID:25701869 PMID:21873635 More...
GO_REF:0000024 GO_REF:0000107 MGI:3587559 MGI:5638293 , RGD:13792537
NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101
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Bco2
beta-carotene oxygenase 2
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1926923 (MGI:5638293|PMID:25701869) PMID:21873635
RGD
PMID:25701869 PMID:21873635
MGI:5638293 , RGD:13792537
NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467
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Cyp1b1
cytochrome P450, family 1, subfamily b, polypeptide 1
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:15258110) GO_REF:0000024 (MGI:5572883|PMID:15258110)
Ensembl RGD UniProt
PMID:15258110
GO_REF:0000024 GO_REF:0000107 MGI:5572883
NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
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Dhrs4
dehydrogenase/reductase 4
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:2655870|PMID:12680773) PMID:21873635
RGD
PMID:12680773 PMID:21873635
MGI:2655870 , RGD:13792537
NCBI chr15:28,966,544...28,978,135
Ensembl chr15:28,966,553...28,978,127
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LOC683961
similar to ribosomal protein S13
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:56,457,121...56,457,669
Ensembl chr 5:56,457,124...56,457,669
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Rbp4
retinol binding protein 4
acts_upstream_of_or_within
ISO
MGI:2445721 (MGI:2150869|PMID:11562477)
RGD
PMID:11562477
MGI:2150869
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
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Rdh10
retinol dehydrogenase 10
involved_in
ISO
(PMID:19458327)
RGD
PMID:19458327
NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
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Rdh11
retinol dehydrogenase 11
acts_upstream_of_or_within
ISO
(PMID:12807874)
RGD
PMID:12807874
NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
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Rdh13
retinol dehydrogenase 13
involved_in
ISO IBA
(PMID:18039331) PMID:21873635
RGD
PMID:18039331 PMID:21873635
RGD:13792537
NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
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Rpe65
retinoid isomerohydrolase RPE65
involved_in
IMP IBA
PMID:21873635
RGD GO_Central
PMID:21785167 PMID:21873635
RGD:6893661 , RGD:13792537
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
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Rps13
ribosomal protein S13
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355 Ensembl chr 3:170,572,921...170,575,355
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Sdr16c5
short chain dehydrogenase/reductase family 16C, member 5
involved_in
IBA ISO
PMID:21873635 (PMID:18926804), (PMID:19102727)
RGD
PMID:18926804 PMID:19102727 PMID:21873635
RGD:13792537
NCBI chr 5:17,018,813...17,043,974
Ensembl chr 5:17,018,813...17,040,970
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