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ONTOLOGY REPORT - ANNOTATIONS

Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism

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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657 		JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:69,761,126...69,778,021
Ensembl chr17:69,761,118...69,778,021 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO (MGI:2655944|PMID:12610736) RGD PMID:12610736 MGI:2655944 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:11585737)		 Ensembl
RGD		 PMID:11585737 GO_REF:0000107 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 involved_in ISO (PMID:11007799) RGD PMID:11007799 NCBI chr 1:16,910,043...16,929,465
Ensembl chr 1:16,910,069...16,930,481 		JBrowse link
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in		 IEA
ISO
IBA		 GO_REF:0000107
MGI:2177469 (MGI:5638293|PMID:25701869)
PMID:21873635		 Ensembl
RGD		 PMID:25701869, PMID:21873635, PMID:21873635 GO_REF:0000107 MGI:5638293, RGD:13792537, RGD:13792537 NCBI chr19:49,637,059...49,673,577
Ensembl chr19:49,637,016...49,673,808 		JBrowse link
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:1926923 (MGI:5638293|PMID:25701869)
PMID:21873635		 RGD PMID:25701869, PMID:21873635, PMID:21873635 MGI:5638293, RGD:13792537, RGD:13792537 NCBI chr 8:54,965,577...54,990,604
Ensembl chr 8:54,965,583...54,998,864 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5572883|PMID:15258110)
GO_REF:0000024
(PMID:15258110)		 Ensembl
RGD
UniProt		 PMID:15258110 GO_REF:0000024 GO_REF:0000107 MGI:5572883 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722 		JBrowse link
G Dhrs13 dehydrogenase/reductase 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:65,329,407...65,334,533
Ensembl chr10:65,329,940...65,334,500 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 acts_upstream_of_or_within ISO (MGI:2655870|PMID:12680773) RGD PMID:12680773 MGI:2655870 NCBI chr15:34,155,043...34,167,073
Ensembl chr15:34,155,504...34,167,072 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:2150869 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711 		JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in ISO (PMID:19458327) RGD PMID:19458327 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030 		JBrowse link
G Rdh11 retinol dehydrogenase 11 involved_in ISO (PMID:12807874) RGD PMID:12807874 NCBI chr 6:102,356,498...102,372,618
Ensembl chr 6:102,356,492...102,372,611 		JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in ISO
IBA		 (PMID:18039331)
PMID:21873635		 RGD PMID:18039331, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:72,956,017...72,983,811
Ensembl chr 1:72,956,026...72,984,350 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within IMP
ISO		 MGI:2181399 (MGI:2180434|PMID:11897783) RGD PMID:11897783, PMID:21785167 MGI:2180434, RGD:6893661 NCBI chr 2:266,141,581...266,169,197
Ensembl chr 2:266,141,581...266,169,197 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO
IBA		 (PMID:18926804), (PMID:19102727)
PMID:21873635		 RGD PMID:18926804 PMID:19102727, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    metabolic process 12142
      cellular metabolic process 11078
        cellular aldehyde metabolic process 66
          retinal metabolic process 16
Path 2
Term Annotations click to browse term
  biological_process 20082
    metabolic process 12142
      primary metabolic process 10862
        lipid metabolic process 1382
          cellular lipid metabolic process 1027
            isoprenoid metabolic process 119
              terpenoid metabolic process 94
                diterpenoid metabolic process 84
                  retinoid metabolic process 75
                    retinal metabolic process 16
paths to the root