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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoic acid metabolic process
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Accession:GO:0042573 term browser browse the term
Definition:The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A.
Synonyms:exact_synonym: retinoic acid metabolism;   vitamin A1 acid metabolic process;   vitamin A1 acid metabolism


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retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide ISO (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668) MGI PMID:10358022 PMID:10402668 MGI:1338643 MGI:1340177 NCBI chrNW_004936520:3,467,003...3,489,754 JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763)
(MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412)
(MGI:1336449|PMID:10191271)
MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:2681052|PMID:14623241)
(MGI:3612223|PMID:16368932)
(MGI:83148|PMID:8797830)
RGD
MGI
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (MGI:3608158|PMID:16207763)
(PMID:11585737)
(MGI:3701419|PMID:17207476)
MGI
UniProt
PMID:11585737 PMID:16207763 PMID:17207476 MGI:3608158 MGI:3701419 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chrNW_004936560:2,562,394...2,580,261 JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO (MGI:1313226|PMID:9826179) MGI PMID:9826179 MGI:1313226 NCBI chrNW_004936580:5,861,051...5,866,818 JBrowse link
G LOC101970102 cytochrome P450 27C1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chrNW_004936469:44,016,925...44,042,569 JBrowse link
G LOC101975674 cytochrome P450 26B1 involved_in ISO (PMID:22020119) UniProt PMID:22020119 NCBI chrNW_004936491:16,010,394...16,028,852 JBrowse link
G LOC101977861 cytochrome P450 26A1 involved_in ISO (MGI:1195386|PMID:9442090), (MGI:894533|PMID:9250660)
(PMID:22020119), (PMID:9716180)
(MGI:3522528|PMID:15531370)
UniProt
MGI
PMID:9250660 PMID:9442090 PMID:9716180 PMID:15531370 PMID:22020119 MGI:1195386 MGI:3522528 MGI:894533 NCBI chrNW_004936601:1,810,572...1,815,927 JBrowse link
G Rbp1 retinol binding protein 1 ISO (MGI:3510590|PMID:15193143) MGI PMID:15193143 MGI:3510590 NCBI chrNW_004936540:1,600,673...1,626,573 JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chrNW_004936646:1,195,200...1,200,778 JBrowse link
G Scpep1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chrNW_004936490:5,903,884...5,939,953 JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004936560:2,562,394...2,580,261 JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO (PMID:11304534) UniProt PMID:11304534 NCBI chrNW_004936469:10,465,701...10,487,534 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chrNW_004936471:33,682,730...33,688,332 JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936648:2,060,131...2,088,021 JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936646:1,195,200...1,200,778 JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402) RGD
UniProt
PMID:15950969 PMID:21138835 PMID:29240402 RGD:6771322 RGD:6771354 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (PMID:27759097)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
(MGI:3042765|PMID:14623956)
RGD
UniProt
MGI
PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 PMID:21138835 PMID:27759097 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004936580:5,861,051...5,866,818 JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chrNW_004936469:10,465,701...10,487,534 JBrowse link
G Rbp1 retinol binding protein 1 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004936540:1,600,673...1,626,573 JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chrNW_004936648:2,060,131...2,088,021 JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101970215 cytochrome P450 2W1 involved_in ISO (PMID:26936974) UniProt PMID:26936974 NCBI chrNW_004936754:1,203,004...1,208,131 JBrowse link
G LOC101975674 cytochrome P450 26B1 involved_in ISO (PMID:10823918) RGD
BHF-UCL
PMID:10823918 PMID:21138835 RGD:6771354 NCBI chrNW_004936491:16,010,394...16,028,852 JBrowse link
G LOC101977861 cytochrome P450 26A1 involved_in ISO (MGI:894533|PMID:9250660)
(PMID:10823918)
MGI
BHF-UCL
PMID:9250660 PMID:10823918 MGI:894533 NCBI chrNW_004936601:1,810,572...1,815,927 JBrowse link
G LOC101978131 cytochrome P450 26C1 involved_in ISO (PMID:14532297) BHF-UCL PMID:14532297 NCBI chrNW_004936601:1,818,037...1,828,400 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12054
    metabolic process 7617
      cellular metabolic process 7009
        cellular hormone metabolic process 76
          retinoic acid metabolic process 17
            9-cis-retinoic acid metabolic process + 5
            retinoic acid biosynthetic process + 10
            retinoic acid catabolic process 4
            retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
Path 2
Term Annotations click to browse term
  biological_process 12054
    metabolic process 7617
      primary metabolic process 6714
        lipid metabolic process 941
          cellular lipid metabolic process 707
            isoprenoid metabolic process 66
              terpenoid metabolic process 50
                diterpenoid metabolic process 46
                  retinoid metabolic process 38
                    retinoic acid metabolic process 17
                      9-cis-retinoic acid metabolic process + 5
                      retinoic acid biosynthetic process + 10
                      retinoic acid catabolic process 4
                      retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
paths to the root