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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoic acid metabolic process
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Accession:GO:0042573 term browser browse the term
Definition:The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A.
Synonyms:exact_synonym: retinoic acid metabolism;   vitamin A1 acid metabolic process;   vitamin A1 acid metabolism


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retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 8:121,089,355...121,105,010
Ensembl chr 8:121,020,910...121,108,190
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412)
(MGI:1336449|PMID:10191271)
(MGI:3608158|PMID:16207763)
MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:2681052|PMID:14623241)
(MGI:3612223|PMID:16368932)
(MGI:83148|PMID:8797830)
RGD
MGI
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (MGI:3608158|PMID:16207763)
(PMID:11585737)
(MGI:3701419|PMID:17207476)
MGI
UniProt
PMID:11585737 PMID:16207763 PMID:17207476 MGI:3608158 MGI:3701419 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,513
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,710...29,083,166
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 involved_in IEA
ISO
(MGI:1313226|PMID:9826179) Ensembl
MGI
PMID:9826179 GO_REF:0000107 MGI:1313226 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in ISO (MGI:3522528|PMID:15531370)
(PMID:22020119), (PMID:9716180)
(MGI:1195386|PMID:9442090), (MGI:894533|PMID:9250660)
MGI
UniProt
PMID:9250660 PMID:9442090 PMID:9716180 PMID:15531370 PMID:22020119 MGI:1195386 MGI:3522528 MGI:894533 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,097
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO (PMID:22020119) UniProt PMID:22020119 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408
JBrowse link
G CYP2C42 cytochrome P450 C42 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr14:106,666,445...106,701,809
Ensembl chr14:106,013,495...106,713,121
JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,221,361...49,235,335
Ensembl chr 6:49,221,315...49,235,330
JBrowse link
G CYP3A29 cytochrome P450 family 3 subfamily A member 29 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 3:6,738,502...6,778,121 JBrowse link
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434
JBrowse link
G LOC100512795 alcohol dehydrogenase class 4 mu/sigma chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:121,020,683...121,041,735
Ensembl chr 8:121,020,910...121,108,190
JBrowse link
G LOC100517560 cytochrome P450 27C1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G LOC110262184 alcohol dehydrogenase 1-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:121,133,130...121,148,456 JBrowse link
G RBP1 retinol binding protein 1 ISO (MGI:3510590|PMID:15193143) MGI PMID:15193143 MGI:3510590 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458
JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr12:33,265,509...33,296,805
Ensembl chr12:33,265,529...33,299,630
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,710...29,083,166
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,780,105...58,809,755
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,535,655
JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434
JBrowse link
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,571,093...62,601,508
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402) RGD
UniProt
PMID:15950969 PMID:21138835 PMID:29240402 RGD:6771322 RGD:6771354 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA
ISO
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
(MGI:3042765|PMID:14623956)
Ensembl
RGD
MGI
UniProt
PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,513
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,535,655
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA
ISO
InterPro
RGD
PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA
ISO
(MGI:3709664|PMID:17473173) Ensembl
MGI
PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,571,093...62,601,508
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRABP1 cellular retinoic acid binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:47,602,316...47,608,865
Ensembl chr 7:47,602,192...47,608,970
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IEA
ISO
(MGI:894533|PMID:9250660) Ensembl
MGI
PMID:9250660 GO_REF:0000107 MGI:894533 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,097
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA
ISO
Ensembl
RGD
PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:104,550,901...104,558,977
Ensembl chr14:104,551,333...104,558,977
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:641,997...649,313
Ensembl chr 3:642,494...648,909
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16538
    metabolic process 10434
      cellular metabolic process 9521
        cellular hormone metabolic process 108
          retinoic acid metabolic process 23
            9-cis-retinoic acid metabolic process + 5
            retinoic acid biosynthetic process + 10
            retinoic acid catabolic process 5
            retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
Path 2
Term Annotations click to browse term
  biological_process 16538
    metabolic process 10434
      primary metabolic process 9295
        lipid metabolic process 1218
          cellular lipid metabolic process 915
            isoprenoid metabolic process 94
              terpenoid metabolic process 74
                diterpenoid metabolic process 65
                  retinoid metabolic process 56
                    retinoic acid metabolic process 23
                      9-cis-retinoic acid metabolic process + 5
                      retinoic acid biosynthetic process + 10
                      retinoic acid catabolic process 5
                      retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
paths to the root