Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:retinoic acid metabolic process
go back to main search page
Accession:GO:0042573 term browser browse the term
Definition:The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A.
Synonyms:exact_synonym: retinoic acid metabolism;   vitamin A1 acid metabolic process;   vitamin A1 acid metabolism


show annotations for term's descendants           Sort by:
 
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:1336449|PMID:10191271)
(MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412)
(MGI:3608158|PMID:16207763)
MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:2681052|PMID:14623241)
(MGI:3612223|PMID:16368932)
(MGI:83148|PMID:8797830)
RGD
MGI
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (MGI:3701419|PMID:17207476)
(PMID:11585737)
(MGI:3608158|PMID:16207763)
MGI
UniProt
PMID:11585737 PMID:16207763 PMID:17207476 MGI:3608158 MGI:3701419 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chr 1:27,672,422...27,695,029
Ensembl chr 1:27,673,024...27,694,868
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 involved_in IEA
ISO
(MGI:1313226|PMID:9826179) Ensembl
MGI
PMID:9826179 GO_REF:0000107 MGI:1313226 NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in ISO (MGI:3522528|PMID:15531370)
(PMID:22020119), (PMID:9716180)
(MGI:1195386|PMID:9442090), (MGI:894533|PMID:9250660)
MGI
UniProt
PMID:9250660 PMID:9442090 PMID:9716180 PMID:15531370 PMID:22020119 MGI:1195386 MGI:3522528 MGI:894533 NCBI chr28:7,423,955...7,432,359
Ensembl chr28:7,428,772...7,432,370
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO (PMID:22020119) UniProt PMID:22020119 NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G CYP2C18 cytochrome P450 2C21 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr28:8,727,010...8,750,427
Ensembl chr28:8,727,019...8,750,587
JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,735,586...112,747,534
Ensembl chr 1:112,736,706...112,747,555
JBrowse link
G CYP3A12 cytochrome P-450 3A12 involved_in ISO (PMID:11093772) UniProt PMID:11093772
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352
JBrowse link
G LOC100856515 alcohol dehydrogenase 1-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:21,383,276...21,397,237 JBrowse link
G LOC100856533 alcohol dehydrogenase E chain involved_in IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr32:21,422,428...21,437,058 JBrowse link
G LOC489851 cytochrome P450 3A12-like involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 6:9,722,401...9,758,759 JBrowse link
G RBP1 retinol binding protein 1 ISO (MGI:3510590|PMID:15193143) MGI PMID:15193143 MGI:3510590 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363
JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453
JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr 9:31,770,494...31,803,741
Ensembl chr 9:31,774,602...31,803,741
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA
ISO
(MGI:2662611|PMID:11876656) Ensembl
MGI
PMID:11876656 GO_REF:0000107 MGI:2662611 NCBI chr 1:27,672,422...27,695,029
Ensembl chr 1:27,673,024...27,694,868
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:13,859,935...13,881,432
Ensembl chr36:13,866,959...13,880,179
JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303
JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402) RGD
UniProt
PMID:15950969 PMID:21138835 PMID:29240402 RGD:6771322 RGD:6771354 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA
ISO
(MGI:3042765|PMID:14623956)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
Ensembl
UniProt
MGI
RGD
PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr36:13,859,935...13,881,432
Ensembl chr36:13,866,959...13,880,179
JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA
ISO
InterPro
RGD
PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA
ISO
(MGI:3709664|PMID:17473173) Ensembl
MGI
InterPro
PMID:17473173 GO_REF:0000002 GO_REF:0000107 MGI:3709664 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IEA
ISO
(MGI:894533|PMID:9250660) Ensembl
MGI
PMID:9250660 GO_REF:0000107 MGI:894533 NCBI chr28:7,423,955...7,432,359
Ensembl chr28:7,428,772...7,432,370
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA
ISO
Ensembl
RGD
PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894
JBrowse link
G CYP26C1 cytochrome P450, family 26, subfamily C, polypeptide 1 involved_in ISO (PMID:14532297) BHF-UCL PMID:14532297 NCBI chr28:7,416,022...7,424,173 JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:15,883,248...15,889,508
Ensembl chr 6:15,881,636...15,889,186
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16149
    metabolic process 10507
      cellular metabolic process 9586
        cellular hormone metabolic process 107
          retinoic acid metabolic process 24
            9-cis-retinoic acid metabolic process + 5
            retinoic acid biosynthetic process + 11
            retinoic acid catabolic process 4
            retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
Path 2
Term Annotations click to browse term
  biological_process 16149
    metabolic process 10507
      primary metabolic process 9347
        lipid metabolic process 1223
          cellular lipid metabolic process 922
            isoprenoid metabolic process 90
              terpenoid metabolic process 71
                diterpenoid metabolic process 64
                  retinoid metabolic process 56
                    retinoic acid metabolic process 24
                      9-cis-retinoic acid metabolic process + 5
                      retinoic acid biosynthetic process + 11
                      retinoic acid catabolic process 4
                      retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
paths to the root