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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoic acid metabolic process
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Accession:GO:0042573 term browser browse the term
Definition:The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A.
Synonyms:exact_synonym: retinoic acid metabolism;   vitamin A1 acid metabolic process;   vitamin A1 acid metabolism


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retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1c alcohol dehydrogenase 1C (class I), gamma polypeptide ISO (MGI:1338643|PMID:10358022), (MGI:2675573|PMID:12851412)
(MGI:3510590|PMID:15193143)
MGI PMID:10358022 PMID:12851412 PMID:15193143 MGI:1338643 MGI:2675573 MGI:3510590 NCBI chrNW_004955496:8,136,279...8,149,496 JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide ISO (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668) MGI PMID:10358022 PMID:10402668 MGI:1338643 MGI:1340177 NCBI chrNW_004955496:8,065,943...8,100,878
Ensembl chrNW_004955496:8,065,943...8,102,066
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:83148|PMID:8797830)
(MGI:3612223|PMID:16368932)
(MGI:2681052|PMID:14623241)
RGD
MGI
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (MGI:3608158|PMID:16207763)
(PMID:11585737)
(MGI:3701419|PMID:17207476)
MGI
UniProt
PMID:11585737 PMID:16207763 PMID:17207476 MGI:3608158 MGI:3701419 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chrNW_004955439:1,773,884...1,794,325
Ensembl chrNW_004955439:1,773,861...1,794,328
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO (MGI:1313226|PMID:9826179) MGI PMID:9826179 MGI:1313226 NCBI chrNW_004955545:2,777,523...2,782,567
Ensembl chrNW_004955545:2,777,474...2,782,567
JBrowse link
G LOC102010839 cytochrome P450 2S1 involved_in ISO (PMID:12711469) UniProt PMID:12711469 NCBI chrNW_004955555:167,634...183,572
Ensembl chrNW_004955555:168,139...182,196
JBrowse link
G LOC102023166 cytochrome P450 26B1 involved_in ISO (PMID:22020119) UniProt PMID:22020119 NCBI chrNW_004955424:13,336,189...13,355,368
Ensembl chrNW_004955424:13,336,189...13,355,423
JBrowse link
G Rbp1 retinol binding protein 1 ISO (MGI:3510590|PMID:15193143) MGI PMID:15193143 MGI:3510590 NCBI chrNW_004955508:6,046,738...6,072,202
Ensembl chrNW_004955508:6,046,316...6,072,288
JBrowse link
G Scpep1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chrNW_004955451:5,847,371...5,876,286
Ensembl chrNW_004955451:5,846,552...5,876,851
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chrNW_004955439:1,773,884...1,794,325
Ensembl chrNW_004955439:1,773,861...1,794,328
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO (PMID:11304534) UniProt PMID:11304534 NCBI chrNW_004955449:5,360,486...5,380,279
Ensembl chrNW_004955449:5,359,617...5,380,267
JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402) RGD
UniProt
PMID:15950969 PMID:21138835 PMID:29240402 RGD:6771322 RGD:6771354 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (PMID:27759097)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
(MGI:3042765|PMID:14623956)
RGD
UniProt
MGI
PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 PMID:21138835 PMID:27759097 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004955545:2,777,523...2,782,567
Ensembl chrNW_004955545:2,777,474...2,782,567
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chrNW_004955449:5,360,486...5,380,279
Ensembl chrNW_004955449:5,359,617...5,380,267
JBrowse link
G Rbp1 retinol binding protein 1 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004955508:6,046,738...6,072,202
Ensembl chrNW_004955508:6,046,316...6,072,288
JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102016571 cytochrome P450 2W1 involved_in ISO (PMID:26936974) UniProt PMID:26936974 NCBI chrNW_004955460:8,705,068...8,711,266
Ensembl chrNW_004955460:8,705,068...8,712,121
JBrowse link
G LOC102023166 cytochrome P450 26B1 involved_in ISO (PMID:10823918) RGD
BHF-UCL
PMID:10823918 PMID:21138835 RGD:6771354 NCBI chrNW_004955424:13,336,189...13,355,368
Ensembl chrNW_004955424:13,336,189...13,355,423
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11940
    metabolic process 7559
      cellular metabolic process 6963
        cellular hormone metabolic process 75
          retinoic acid metabolic process 14
            9-cis-retinoic acid metabolic process + 4
            retinoic acid biosynthetic process + 8
            retinoic acid catabolic process 2
            retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
Path 2
Term Annotations click to browse term
  biological_process 11940
    metabolic process 7559
      primary metabolic process 6669
        lipid metabolic process 930
          cellular lipid metabolic process 694
            isoprenoid metabolic process 62
              terpenoid metabolic process 47
                diterpenoid metabolic process 43
                  retinoid metabolic process 35
                    retinoic acid metabolic process 14
                      9-cis-retinoic acid metabolic process + 4
                      retinoic acid biosynthetic process + 8
                      retinoic acid catabolic process 2
                      retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
paths to the root