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ONTOLOGY REPORT - ANNOTATIONS


Term:retinoic acid metabolic process
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Accession:GO:0042573 term browser browse the term
Definition:The chemical reactions and pathways involving retinoic acid, one of the three components that makes up vitamin A.
Synonyms:exact_synonym: retinoic acid metabolism;   vitamin A1 acid metabolic process;   vitamin A1 acid metabolism


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retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide ISO (MGI:1338643|PMID:10358022), (MGI:1340177|PMID:10402668) MGI PMID:10358022 PMID:10402668 MGI:1338643 MGI:1340177 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763)
(MGI:1336449|PMID:10191271)
(MGI:2664447|PMID:12808103), (MGI:2675573|PMID:12851412)
MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 MGI:1336449 MGI:2664447 MGI:2675573 MGI:3608158 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:83148|PMID:8797830)
(MGI:3612223|PMID:16368932)
(MGI:2681052|PMID:14623241)
RGD
MGI
PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 MGI:2681052 MGI:3612223 MGI:83148 RGD:1576367 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (MGI:3608158|PMID:16207763)
(PMID:11585737)
(MGI:3701419|PMID:17207476)
MGI
UniProt
PMID:11585737 PMID:16207763 PMID:17207476 MGI:3608158 MGI:3701419 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO (MGI:1313226|PMID:9826179) MGI PMID:9826179 MGI:1313226 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in ISO (MGI:3522528|PMID:15531370)
(PMID:22020119), (PMID:9716180)
(MGI:1195386|PMID:9442090), (MGI:894533|PMID:9250660)
MGI
UniProt
PMID:9250660 PMID:9442090 PMID:9716180 PMID:15531370 PMID:22020119 MGI:1195386 MGI:3522528 MGI:894533 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO (PMID:22020119) UniProt PMID:22020119 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G CYP2C8 cytochrome P450 family 2 subfamily C member 8 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr10:91,646,387...91,679,998
Ensembl chr10:95,157,661...95,186,620
JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in ISO (PMID:12711469) UniProt PMID:12711469 NCBI chr19:38,185,893...38,200,064
Ensembl chr19:46,693,025...46,705,950
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401
JBrowse link
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 7:91,621,561...91,654,164
Ensembl chr 7:105,123,437...105,155,322
JBrowse link
G CYP3A67 cytochrome P450 family 3 subfamily A member 67 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 7:91,678,209...91,707,321
Ensembl chr 7:105,160,420...105,208,799
JBrowse link
G RBP1 retinol binding protein 1 ISO (MGI:3510590|PMID:15193143) MGI PMID:15193143 MGI:3510590 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr17:51,055,293...51,084,032
Ensembl chr17:55,915,746...55,944,377
JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 ISO (MGI:2662611|PMID:11876656) MGI PMID:11876656 MGI:2662611 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636
JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in ISO (PMID:11304534) UniProt PMID:11304534 NCBI chr2B:56,347,489...56,376,463
Ensembl chr2B:173,811,932...173,842,816
JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402) RGD
UniProt
PMID:15950969 PMID:21138835 PMID:29240402 RGD:6771322 RGD:6771354 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in ISO (PMID:27759097)
(MGI:1927016|PMID:11044606), (MGI:3055622|PMID:11013254), (MGI:3692370|PMID:16241904)
(MGI:3042765|PMID:14623956)
RGD
UniProt
MGI
PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 PMID:21138835 PMID:27759097 MGI:1927016 MGI:3042765 MGI:3055622 MGI:3692370 RGD:6771322 RGD:6771354 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr2B:56,347,489...56,376,463
Ensembl chr2B:173,811,932...173,842,816
JBrowse link
G RBP1 retinol binding protein 1 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
G RDH10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in ISO (MGI:894533|PMID:9250660)
(PMID:10823918)
MGI
BHF-UCL
PMID:9250660 PMID:10823918 MGI:894533 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105
JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO (PMID:10823918) RGD
BHF-UCL
PMID:10823918 PMID:21138835 RGD:6771354 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in ISO (PMID:14532297) BHF-UCL PMID:14532297 NCBI chr10:89,804,830...89,813,687
Ensembl chr10:93,317,798...93,325,315
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in ISO (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:1,140,855...1,147,788
Ensembl chr 7:1,353,510...1,362,781
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12618
    metabolic process 7924
      cellular metabolic process 7265
        cellular hormone metabolic process 91
          retinoic acid metabolic process 21
            9-cis-retinoic acid metabolic process + 5
            retinoic acid biosynthetic process + 9
            retinoic acid catabolic process 4
            retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
Path 2
Term Annotations click to browse term
  biological_process 12618
    metabolic process 7924
      primary metabolic process 6961
        lipid metabolic process 997
          cellular lipid metabolic process 743
            isoprenoid metabolic process 80
              terpenoid metabolic process 63
                diterpenoid metabolic process 57
                  retinoid metabolic process 49
                    retinoic acid metabolic process 21
                      9-cis-retinoic acid metabolic process + 5
                      retinoic acid biosynthetic process + 9
                      retinoic acid catabolic process 4
                      retinoic acid metabolic process in spinal cord anterior-posterior patterning 0
paths to the root